Chain A from PDB Type:PROTEIN Length:280
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:283
83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353
VINT_LAMBD 74 VTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains d1p7da_ A: Integrase (Int) SCOP domains
CATH domains 1p7dA01 A:74-174 [code=1.10.150.130, no na me defined] --1p7dA02 A:177-356 Intergrase catalytic core CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....---hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhh...eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh..................ee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1p7d A 74 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPL---TTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQyRDDRGREWDKIEIK 356
83 93 103 113 | |123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353
116 120 342-PTR
Chain B from PDB Type:PROTEIN Length:280
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:283
83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353
VINT_LAMBD 74 VTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains d1p7db_ B: Integrase (Int) SCOP domains
CATH domains 1p7dB01 B:74-174 [code=1.10.150.130, no na me defined] --1p7dB02 B:177-356 Intergrase catalytic core CATH domains
Pfam domains (1) -Ph---Phage_integr_N-1p7dB03 B:80-158 -------------------Phage_integrase-1p7dB01 B:178-349 ------- Pfam domains (1)
Pfam domains (2) -Ph---Phage_integr_N-1p7dB04 B:80-158 -------------------Phage_integrase-1p7dB02 B:178-349 ------- Pfam domains (2)
Sec.struct. author .hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....---hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhh...eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh........................ Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1p7d B 74 MTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPL---TTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQyRDDRGREWDKIEIK 356
83 93 103 113 | |123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353
116 120 342-PTR
Chain C from PDB Type:DNA Length:13
1p7d C 1 CAATGCCAACTTT 13
10
Chain D from PDB Type:DNA Length:26
1p7d D 14 TTTGCGAAGCAAAAAAGTTGGCATTG 39
23 33
Chain E from PDB Type:DNA Length:13
1p7d E 1 CAATGCCAACTTT 13
10
Chain F from PDB Type:DNA Length:26
1p7d F 14 TTTGCGAAGCAAAAAAGTTGGCATTG 39
23 33
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |