Chain A from PDB Type:PROTEIN Length:273
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:283
83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353
VINT_LAMBD 74 VTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains d1z19a_ A: Integrase (Int) SCOP domains
CATH domains -1z19A01 A:75-174 [code=1.10.150.130, no name defined] --1z19A02 A:177-356 Intergrase catalytic core CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhhh.............hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh......----------........ Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z19 A 74 mTLHSWLDRYEKILASRGIKQKTLINYmSKIKAIRRGLPDAPLEDITTKEIAAmLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAmELAVVTGQRVGDLCEmKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISmKETLDKCKEILGGETIIASTRREPLSSGTVSRYFmRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTm----------EWDKIEIK 356
| 83 93 103 113 123 | 133 143 153 163 173 183 193 203 213 | 223 233 243 253 | 263 273 283 |293 303 313 323 333 | - | 353
| 101-MSE 127-MSE 203-MSE 219-MSE 255-MSE 290-MSE 338-MSE 349
74-MSE
Chain B from PDB Type:PROTEIN Length:283
aligned with VINT_LAMBD | P03700 from UniProtKB/Swiss-Prot Length:356
Alignment length:283
83 93 103 113 123 133 143 153 163 173 183 193 203 213 223 233 243 253 263 273 283 293 303 313 323 333 343 353
VINT_LAMBD 74 VTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK 356
SCOP domains d1z19b_ B: Integrase (Int) SCOP domains
CATH domains -1z19B01 B:75-174 [code=1.10.150.130, no name defined] --1z19B02 B:177-356 Intergrase catalytic core CATH domains
Pfam domains (1) -Ph---Phage_integr_N-1z19B03 B:80-158 -------------------Phage_integrase-1z19B01 B:178-349 ------- Pfam domains (1)
Pfam domains (2) -Ph---Phage_integr_N-1z19B04 B:80-158 -------------------Phage_integrase-1z19B02 B:178-349 ------- Pfam domains (2)
Sec.struct. author .hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......................hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.hhhhhhhhhhh.ee..eeeee......eeeee...ee....eehhhhhhhhhhhh..............hhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.......ee.... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1z19 B 74 mTLHSWLDRYEKILASRGIKQKTLINYmSKIKAIRRGLPDAPLEDITTKEIAAmLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNHVAATRAAKSKVRRSRLTADEYLKIYQAAESSPCWLRLAmELAVVTGQRVGDLCEmKWSDIVDGYLYVEQSKTGVKIAIPTALHIDALGISmKETLDKCKEILGGETIIASTRREPLSSGTVSRYFmRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTmASQyRDDRGREWDKIEIK 356
| 83 93 103 113 123 | 133 143 153 163 173 183 193 203 213 | 223 233 243 253 | 263 273 283 |293 303 313 323 333 | 343 353
74-MSE 101-MSE 127-MSE 203-MSE 219-MSE 255-MSE 290-MSE 338-MSE
342-PTR
Chain C from PDB Type:DNA Length:13
1z19 C 1 CTCGTTCAGCTTT 13
10
Chain D from PDB Type:DNA Length:20
1z19 D 14 TTTATACTAAGTTGGCATTA 33
23 33
Chain E from PDB Type:DNA Length:33
1z19 E 34 TAATGCCAACTTAGTATAAAAAAGCTGAACGAG 66
43 53 63
Legend: |
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→ Mismatch |
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(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |