Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE INTERFACE OPEN CONFORMATION OF TETRAMERIC 11B-HSD1
 
Authors :  D. J. Hosfield, Y. Wu, R. J. Skene, M. Hilger, A. Jennings, G. P. Snell, K. Aertgeerts
Date :  25 Oct 04  (Deposition) - 02 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  11B-Hsd1, Sdr, Dehydrogenase, Hydroxysteroid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. J. Hosfield, Y. Wu, R. J. Skene, M. Hilger, A. Jennings, G. P. Snell, K. Aertgeerts
Conformational Flexibility In Crystal Structures Of Human 11Beta-Hydroxysteroid Dehydrogenase Type I Provide Insights Into Glucocorticoid Interconversion And Enzyme Regulation.
J. Biol. Chem. V. 280 4639 2005
PubMed-ID: 15513927  |  Reference-DOI: 10.1074/JBC.M411104200

(-) Compounds

Molecule 1 - CORTICOSTEROID 11-BETA-DEHYDROGENASE, ISOZYME 1
    ChainsA, B, C, D
    EC Number1.1.1.146
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System CellDH10B-TIR
    Expression System PlasmidPBAD-THIOE
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneHSD11B1, HSD11, HSD11L
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym11-DH, 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1, 11-BETA-HSD1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)ABCD
Biological Unit 2 (1x)  CD
Biological Unit 3 (1x)AB  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1CPS6Ligand/Ion3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
2NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1CPS6Ligand/Ion3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
2NDP4Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1CPS3Ligand/Ion3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1CPS3Ligand/Ion3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
2NDP2Ligand/IonNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:41 , SER A:43 , LYS A:44 , GLY A:45 , ILE A:46 , ALA A:65 , ARG A:66 , SER A:67 , THR A:92 , MET A:93 , ASN A:119 , HIS A:120 , ILE A:121 , VAL A:168 , SER A:169 , SER A:170 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , CPS A:523 , HOH A:536 , HOH A:543 , HOH A:557 , HOH A:597 , HOH A:618 , HOH A:685 , HOH A:744 , HOH A:797 , HOH A:803 , HOH A:964BINDING SITE FOR RESIDUE NDP A 522
02AC2SOFTWAREILE A:121 , LEU A:171 , TYR A:177 , TYR A:183 , LEU A:217 , ALA A:223 , VAL A:227 , GLN A:234 , SER A:260 , SER A:261 , THR A:264 , NDP A:522 , HOH A:546 , HOH A:580 , TYR B:280 , HOH B:921BINDING SITE FOR RESIDUE CPS A 523
03AC3SOFTWAREGLY B:41 , SER B:43 , LYS B:44 , GLY B:45 , ILE B:46 , ALA B:65 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , HIS B:120 , ILE B:121 , VAL B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , CPS B:525 , HOH B:567 , HOH B:575 , HOH B:617 , HOH B:642 , HOH B:686 , HOH B:741 , HOH B:795 , HOH B:820 , HOH B:830 , HOH B:945 , HOH B:1000BINDING SITE FOR RESIDUE NDP B 524
04AC4SOFTWARETYR A:280 , HOH A:861 , ILE B:121 , LEU B:171 , TYR B:177 , TYR B:183 , LEU B:217 , ALA B:223 , MET B:233 , GLN B:234 , THR B:264 , NDP B:524 , HOH B:550 , HOH B:823BINDING SITE FOR RESIDUE CPS B 525
05AC5SOFTWAREGLY C:41 , SER C:43 , LYS C:44 , GLY C:45 , ILE C:46 , ALA C:65 , ARG C:66 , SER C:67 , THR C:92 , MET C:93 , ASN C:119 , HIS C:120 , ILE C:121 , VAL C:168 , SER C:169 , SER C:170 , TYR C:183 , LYS C:187 , LEU C:215 , GLY C:216 , LEU C:217 , ILE C:218 , THR C:220 , THR C:222 , ALA C:223 , CPS C:527 , HOH C:566 , HOH C:569 , HOH C:625 , HOH C:707 , HOH C:793 , HOH C:834 , HOH C:932 , HOH C:954BINDING SITE FOR RESIDUE NDP C 526
06AC6SOFTWAREILE C:121 , THR C:124 , LEU C:171 , TYR C:177 , TYR C:183 , LEU C:217 , ALA C:223 , MET C:233 , GLN C:234 , THR C:264 , NDP C:526 , HOH C:801 , HOH C:872 , TYR D:280 , HOH D:897BINDING SITE FOR RESIDUE CPS C 527
07AC7SOFTWAREGLY D:41 , SER D:43 , LYS D:44 , GLY D:45 , ILE D:46 , ALA D:65 , ARG D:66 , SER D:67 , THR D:92 , MET D:93 , ASN D:119 , HIS D:120 , ILE D:121 , VAL D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , CPS D:529 , HOH D:560 , HOH D:576 , HOH D:603 , HOH D:606 , HOH D:635 , HOH D:829 , HOH D:965BINDING SITE FOR RESIDUE NDP D 528
08AC8SOFTWARETYR C:280 , HOH C:708 , ILE D:121 , LEU D:171 , TYR D:177 , TYR D:183 , LEU D:217 , ALA D:223 , MET D:233 , GLN D:234 , NDP D:528 , HOH D:584 , HOH D:796 , HOH D:884BINDING SITE FOR RESIDUE CPS D 529
09AC9SOFTWAREPRO A:271 , SER A:272 , ILE A:275 , HOH A:998 , LEU C:266 , PRO C:271 , SER D:272BINDING SITE FOR RESIDUE CPS A 1
10BC1SOFTWARELEU A:266 , SER B:272 , PRO C:271 , SER C:272 , ILE C:275BINDING SITE FOR RESIDUE CPS C 2

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1XU7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser C:228 -Gly C:229

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 8)

Asymmetric Unit (2, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035845V148EDHI1_HUMANUnclassified  ---A/B/C/DV148E
2CancerSNPVAR_DHI1_HUMAN_CCDS1489_1_01 *V148EDHI1_HUMANDisease (Breast cancer)  ---A/B/C/DV148E
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (2, 8)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035845V148EDHI1_HUMANUnclassified  ---A/B/C/DV148E
2CancerSNPVAR_DHI1_HUMAN_CCDS1489_1_01 *V148EDHI1_HUMANDisease (Breast cancer)  ---A/B/C/DV148E
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035845V148EDHI1_HUMANUnclassified  ---C/DV148E
2CancerSNPVAR_DHI1_HUMAN_CCDS1489_1_01 *V148EDHI1_HUMANDisease (Breast cancer)  ---C/DV148E
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (2, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_035845V148EDHI1_HUMANUnclassified  ---A/BV148E
2CancerSNPVAR_DHI1_HUMAN_CCDS1489_1_01 *V148EDHI1_HUMANDisease (Breast cancer)  ---A/BV148E
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHI1_HUMAN170-198
 
 
 
  4A:170-198
B:170-198
C:170-198
D:170-198
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHI1_HUMAN170-198
 
 
 
  4A:170-198
B:170-198
C:170-198
D:170-198
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHI1_HUMAN170-198
 
 
 
  2-
-
C:170-198
D:170-198
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ADH_SHORTPS00061 Short-chain dehydrogenases/reductases family signature.DHI1_HUMAN170-198
 
 
 
  2A:170-198
B:170-198
-
-

(-) Exons   (6, 24)

Asymmetric Unit (6, 24)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003670281aENSE00001443288chr1:209859510-209859630121DHI1_HUMAN-00--
1.2bENST000003670282bENSE00001443287chr1:209878240-209878375136DHI1_HUMAN1-30304A:21-30
B:21-30
C:21-30
D:21-30
10
10
10
10
1.3ENST000003670283ENSE00000792110chr1:209879156-209879286131DHI1_HUMAN30-73444A:30-73
B:30-73
C:30-73
D:30-73
44
44
44
44
1.4ENST000003670284ENSE00000792111chr1:209880054-209880165112DHI1_HUMAN74-111384A:74-111
B:74-111
C:74-111
D:74-111
38
38
38
38
1.5ENST000003670285ENSE00000792112chr1:209880288-209880473186DHI1_HUMAN111-173634A:111-173
B:111-173
C:111-173
D:111-173
63
63
63
63
1.6ENST000003670286ENSE00000792113chr1:209905781-209905924144DHI1_HUMAN173-221494A:173-221
B:173-221
C:173-221
D:173-221
49
49
49
49
1.7aENST000003670287aENSE00001443286chr1:209907649-209908209561DHI1_HUMAN221-292724A:221-283
B:221-282
C:221-282
D:221-281
63
62
62
61

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:263
 aligned with DHI1_HUMAN | P28845 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:263
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280   
           DHI1_HUMAN    21 YSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYSTS 283
               SCOP domains d1xu7a_ A: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                       SCOP domains
               CATH domains 1xu7A00 A:21-283 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeee....hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------------------------------E--------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------E--------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: A:170-198    ------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b -------------------------------------------Exon 1.4  PDB: A:74-111               -------------------------------------------------------------Exon 1.6  PDB: A:173-221 UniProt: 173-221        -------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.3  PDB: A:30-73 UniProt: 30-73       -------------------------------------Exon 1.5  PDB: A:111-173 UniProt: 111-173                      -----------------------------------------------Exon 1.7a  PDB: A:221-283 UniProt: 221-292 [INCOMPLETE]         Transcript 1 (2)
                 1xu7 A  21 QPLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYSTS 283
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280   

Chain B from PDB  Type:PROTEIN  Length:262
 aligned with DHI1_HUMAN | P28845 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:262
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  
           DHI1_HUMAN    21 YSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYST 282
               SCOP domains d1xu7b_ B: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                      SCOP domains
               CATH domains 1xu7B00 B:21-282 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------------------------------E-------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------E-------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: B:170-198    ------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2b -------------------------------------------Exon 1.4  PDB: B:74-111               -------------------------------------------------------------Exon 1.6  PDB: B:173-221 UniProt: 173-221        ------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.3  PDB: B:30-73 UniProt: 30-73       -------------------------------------Exon 1.5  PDB: B:111-173 UniProt: 111-173                      -----------------------------------------------Exon 1.7a  PDB: B:221-282 UniProt: 221-292 [INCOMPLETE]        Transcript 1 (2)
                 1xu7 B  21 QPLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYST 282
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  

Chain C from PDB  Type:PROTEIN  Length:262
 aligned with DHI1_HUMAN | P28845 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:262
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  
           DHI1_HUMAN    21 YSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYST 282
               SCOP domains d1xu7c_ C: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                      SCOP domains
               CATH domains 1xu7C00 C:21-282 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                   CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhh.........hhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------------------------------E-------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------E-------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: C:170-198    ------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.2b -------------------------------------------Exon 1.4  PDB: C:74-111               -------------------------------------------------------------Exon 1.6  PDB: C:173-221 UniProt: 173-221        ------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.3  PDB: C:30-73 UniProt: 30-73       -------------------------------------Exon 1.5  PDB: C:111-173 UniProt: 111-173                      -----------------------------------------------Exon 1.7a  PDB: C:221-282 UniProt: 221-292 [INCOMPLETE]        Transcript 1 (2)
                 1xu7 C  21 QPLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYST 282
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280  

Chain D from PDB  Type:PROTEIN  Length:261
 aligned with DHI1_HUMAN | P28845 from UniProtKB/Swiss-Prot  Length:292

    Alignment length:261
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 
           DHI1_HUMAN    21 YSANEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPCRKILEFLYS 281
               SCOP domains d1xu7d_ D: 11-beta-hydroxysteroid dehydrogenase 1                                                                                                                                                                                                                     SCOP domains
               CATH domains 1xu7D00 D:21-281 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.hhh.....hhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------------------------------------------------------------------------------------------E------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------E------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------ADH_SHORT  PDB: D:170-198    ----------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.2b -------------------------------------------Exon 1.4  PDB: D:74-111               -------------------------------------------------------------Exon 1.6  PDB: D:173-221 UniProt: 173-221        ------------------------------------------------------------ Transcript 1 (1)
           Transcript 1 (2) ---------Exon 1.3  PDB: D:30-73 UniProt: 30-73       -------------------------------------Exon 1.5  PDB: D:111-173 UniProt: 111-173                      -----------------------------------------------Exon 1.7a  PDB: D:221-281 UniProt: 221-292 [INCOMPLETE]       Transcript 1 (2)
                 1xu7 D  21 QPLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSLWTTLLIRNPSRKILEFLYS 281
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1XU7)

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (DHI1_HUMAN | P28845)
molecular function
    GO:0070524    11-beta-hydroxysteroid dehydrogenase (NADP+) activity    Catalysis of the reaction: an 11-beta-hydroxysteroid + NADP+ = an 11-oxosteroid + NADPH + H+.
    GO:0003845    11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity    Catalysis of the reaction: an 11-beta-hydroxysteroid + NAD(P)+ = an 11-oxosteroid + NAD(P)H + H(+).
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006704    glucocorticoid biosynthetic process    The chemical reactions and pathways resulting in the formation of glucocorticoids, hormonal C21 corticosteroids synthesized from cholesterol.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0030324    lung development    The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CPS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NDP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ser C:228 - Gly C:229   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1xu7
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DHI1_HUMAN | P28845
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  1.1.1.146
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  DHI1_HUMAN | P28845
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHI1_HUMAN | P288451xu9 2bel 2ilt 2irw 2rbe 3byz 3bzu 3ch6 3czr 3d3e 3d4n 3d5q 3ey4 3fco 3frj 3h6k 3hfg 3oq1 3pdj 3qqp 3tfq 4bb5 4bb6 4c7j 4c7k 4hfr 4hx5 4iju 4ijv 4ijw 4k1l 4p38 4yyz

(-) Related Entries Specified in the PDB File

1xu9