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(-) Description

Title :  CRYSTAL STRUCTURE OF 11B-HSD1 DOUBLE MUTANT (L262R, F278E) IN COMPLEX WITH (1S,4S)-4-[8-(2-FLUOROPHENOXY)[1,2,4]TRIAZOLO[4,3-A]PYRIDIN-3-YL]BICYCLO[2.2.1]HEPTAN-1-OL
 
Authors :  S. Sheriff
Date :  23 Dec 12  (Deposition) - 11 Jun 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,D,E
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  D,E  (1x)
Keywords :  11B-Hsd1, Sdr, Dehydrogenase, Hydroxysteroid, Inhibitor, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Li, L. J. Kennedy, H. Wang, J. J. Li, S. J. Walker, Z. Hong, S. P. O'Connor, A. Nayeem, D. M. Camac, P. E. Morin, S. Sheriff, M. Wang, T. Harper, R. Golla, R. Seethala, T. Harrity, R. P. Ponticiello, N. N. Morgan, J. R. Taylor, R. Zebo, D. A. Gordon, J. A. Robl
Optimization Of 1, 2, 4-Triazolopyridines As Inhibitors Of Human 11 Beta-Hydroxysteroid Dehydrogenase Type 1 (11 Beta-Hsd-1).
Acs Med Chem Lett V. 5 803 2014
PubMed-ID: 25050169  |  Reference-DOI: 10.1021/ML500144H

(-) Compounds

Molecule 1 - CORTICOSTEROID 11-BETA-DEHYDROGENASE ISOZYME 1
    Chains: A, B, D, E
    EC Number: 1.1.1.146
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HSD11B1, HSD11, HSD11L
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 11-BETA-HYDROXYSTEROID DEHYDROGENASE 1, 11-DH, 11-BETA-HSD1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABDE
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   DE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
11EO4Ligand/Ion(1S,4S)-4-[8-(2-FLUOROPHENOXY)[1,2,4]TRIAZOLO[4,3-A]PYRIDIN-3-YL]BICYCLO[2.2.1]HEPTAN-1-OL
2CL2Ligand/IonCHLORIDE ION
3NAP4Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
11EO2Ligand/Ion(1S,4S)-4-[8-(2-FLUOROPHENOXY)[1,2,4]TRIAZOLO[4,3-A]PYRIDIN-3-YL]BICYCLO[2.2.1]HEPTAN-1-OL
2CL-1Ligand/IonCHLORIDE ION
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
11EO2Ligand/Ion(1S,4S)-4-[8-(2-FLUOROPHENOXY)[1,2,4]TRIAZOLO[4,3-A]PYRIDIN-3-YL]BICYCLO[2.2.1]HEPTAN-1-OL
2CL-1Ligand/IonCHLORIDE ION
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:41 , ALA A:42 , SER A:43 , LYS A:44 , GLY A:45 , ILE A:46 , ALA A:65 , ARG A:66 , SER A:67 , THR A:92 , MET A:93 , ASN A:119 , ILE A:121 , VAL A:168 , SER A:169 , SER A:170 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , 1EO A:302 , HOH A:415 , HOH A:416 , HOH A:429 , HOH A:431 , HOH A:432 , HOH A:460 , HOH A:533 , HOH A:535BINDING SITE FOR RESIDUE NAP A 301
02AC2SOFTWAREILE A:121 , THR A:124 , SER A:170 , LEU A:171 , ALA A:172 , TYR A:177 , TYR A:183 , GLY A:216 , LEU A:217 , ALA A:223 , MET A:233 , NAP A:301 , HOH A:448 , HOH A:535 , TYR B:280BINDING SITE FOR RESIDUE 1EO A 302
03AC3SOFTWAREGLY B:41 , ALA B:42 , SER B:43 , LYS B:44 , GLY B:45 , ILE B:46 , ALA B:65 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , ILE B:121 , VAL B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , LEU B:217 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , 1EO B:302 , HOH B:426 , HOH B:428 , HOH B:433 , HOH B:437 , HOH B:450 , HOH B:462 , HOH B:463 , HOH B:473 , HOH B:505 , HOH B:551BINDING SITE FOR RESIDUE NAP B 301
04AC4SOFTWARETYR A:280 , ILE B:121 , THR B:124 , SER B:170 , LEU B:171 , ALA B:172 , TYR B:177 , TYR B:183 , GLY B:216 , LEU B:217 , ALA B:223 , NAP B:301 , HOH B:499 , HOH B:551BINDING SITE FOR RESIDUE 1EO B 302
05AC5SOFTWAREGLY D:41 , ALA D:42 , SER D:43 , GLY D:45 , ILE D:46 , ALA D:65 , ARG D:66 , SER D:67 , THR D:92 , MET D:93 , ASN D:119 , ILE D:121 , VAL D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , 1EO D:302 , HOH D:425 , HOH D:427 , HOH D:428 , HOH D:431 , HOH D:444 , HOH D:446 , HOH D:458 , HOH D:493 , HOH D:520 , HOH D:521BINDING SITE FOR RESIDUE NAP D 301
06AC6SOFTWAREILE D:121 , THR D:124 , SER D:170 , LEU D:171 , ALA D:172 , TYR D:177 , TYR D:183 , GLY D:216 , LEU D:217 , ALA D:223 , MET D:233 , NAP D:301 , HOH D:410 , HOH D:446 , TYR E:280BINDING SITE FOR RESIDUE 1EO D 302
07AC7SOFTWAREGLY D:45 , ARG D:48 , GLU D:221 , LYS D:238BINDING SITE FOR RESIDUE CL D 303
08AC8SOFTWAREGLY E:41 , ALA E:42 , SER E:43 , LYS E:44 , GLY E:45 , ILE E:46 , ALA E:65 , ARG E:66 , SER E:67 , THR E:92 , MET E:93 , GLU E:94 , ASN E:119 , ILE E:121 , VAL E:168 , SER E:169 , SER E:170 , TYR E:183 , LYS E:187 , LEU E:215 , GLY E:216 , LEU E:217 , ILE E:218 , THR E:220 , THR E:222 , ALA E:223 , 1EO E:302 , HOH E:411 , HOH E:412 , HOH E:419 , HOH E:435 , HOH E:437 , HOH E:440 , HOH E:444 , HOH E:453BINDING SITE FOR RESIDUE NAP E 301
09AC9SOFTWARETYR D:280 , ILE E:121 , THR E:124 , SER E:170 , ALA E:172 , VAL E:175 , TYR E:177 , TYR E:183 , LEU E:217 , ALA E:223 , MET E:233 , NAP E:301 , HOH E:423BINDING SITE FOR RESIDUE 1EO E 302
10BC1SOFTWAREGLY E:45 , ARG E:48 , GLU E:221 , LYS E:238BINDING SITE FOR RESIDUE CL E 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IJU)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn B:24 -Glu B:25

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IJU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IJU)

(-) Exons   (0, 0)

(no "Exon" information available for 4IJU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
                                                                                                                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iju A  26 EFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSRWTTLLIRNPCRKILEELYSTSYNMDRFIN 291
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285      


Chain B from PDB  Type:PROTEIN  Length:282
                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh.............hhhhhh..eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4iju B  10 MASMTGGQQMGRGSNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSRWTTLLIRNPCRKILEELYSTSYNMDRFIN 291
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289  


Chain D from PDB  Type:PROTEIN  Length:275
                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.............hhhhhh..eeee....hhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iju D  10 MASMTGGQQMGRGSNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSRWTTLLIRNPCRKILEELYSTSY 284
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279     


Chain E from PDB  Type:PROTEIN  Length:267
                                                                                                                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhhhh........hhhhhhhhhhhhhhh...eeee..hhhhhhhh.hhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4iju E  25 EEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSGIVHMQAAPKEECALEIIKGGALRQEEVYYDSSRWTTLLIRNPCRKILEELYSTSYNMDRFIN 291
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IJU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4IJU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IJU)

(-) Gene Ontology  (12, 12)

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        DHI1_HUMAN | P28845: 1xu7 1xu9 2bel 2ilt 2irw 2rbe 3byz 3bzu 3ch6 3czr 3d3e 3d4n 3d5q 3ey4 3fco 3frj 3h6k 3hfg 3oq1 3pdj 3qqp 3tfq 4bb5 4bb6 4c7j 4c7k 4hfr 4hx5 4ijv 4ijw 4k1l 4p38 4yyz

(-) Related Entries Specified in the PDB File

4ijv 4ijw