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1XU7
Asym. Unit
Info
Asym.Unit (186 KB)
Biol.Unit 1 (178 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE INTERFACE OPEN CONFORMATION OF TETRAMERIC 11B-HSD1
Authors
:
D. J. Hosfield, Y. Wu, R. J. Skene, M. Hilger, A. Jennings, G. P. Snell, K. Aertgeerts
Date
:
25 Oct 04 (Deposition) - 02 Nov 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
11B-Hsd1, Sdr, Dehydrogenase, Hydroxysteroid, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Hosfield, Y. Wu, R. J. Skene, M. Hilger, A. Jennings, G. P. Snell, K. Aertgeerts
Conformational Flexibility In Crystal Structures Of Human 11Beta-Hydroxysteroid Dehydrogenase Type I Provide Insights Into Glucocorticoid Interconversion And Enzyme Regulation.
J. Biol. Chem. V. 280 4639 2005
[
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSa)
1b: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSb)
1c: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSc)
1d: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSd)
1e: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSe)
1f: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMO... (CPSf)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
2c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
2d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CPS
6
Ligand/Ion
3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE
2
NDP
4
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:41 , SER A:43 , LYS A:44 , GLY A:45 , ILE A:46 , ALA A:65 , ARG A:66 , SER A:67 , THR A:92 , MET A:93 , ASN A:119 , HIS A:120 , ILE A:121 , VAL A:168 , SER A:169 , SER A:170 , TYR A:183 , LYS A:187 , LEU A:215 , GLY A:216 , LEU A:217 , ILE A:218 , THR A:220 , THR A:222 , ALA A:223 , CPS A:523 , HOH A:536 , HOH A:543 , HOH A:557 , HOH A:597 , HOH A:618 , HOH A:685 , HOH A:744 , HOH A:797 , HOH A:803 , HOH A:964
BINDING SITE FOR RESIDUE NDP A 522
02
AC2
SOFTWARE
ILE A:121 , LEU A:171 , TYR A:177 , TYR A:183 , LEU A:217 , ALA A:223 , VAL A:227 , GLN A:234 , SER A:260 , SER A:261 , THR A:264 , NDP A:522 , HOH A:546 , HOH A:580 , TYR B:280 , HOH B:921
BINDING SITE FOR RESIDUE CPS A 523
03
AC3
SOFTWARE
GLY B:41 , SER B:43 , LYS B:44 , GLY B:45 , ILE B:46 , ALA B:65 , ARG B:66 , SER B:67 , THR B:92 , MET B:93 , ASN B:119 , HIS B:120 , ILE B:121 , VAL B:168 , SER B:169 , SER B:170 , TYR B:183 , LYS B:187 , LEU B:215 , GLY B:216 , ILE B:218 , THR B:220 , THR B:222 , ALA B:223 , CPS B:525 , HOH B:567 , HOH B:575 , HOH B:617 , HOH B:642 , HOH B:686 , HOH B:741 , HOH B:795 , HOH B:820 , HOH B:830 , HOH B:945 , HOH B:1000
BINDING SITE FOR RESIDUE NDP B 524
04
AC4
SOFTWARE
TYR A:280 , HOH A:861 , ILE B:121 , LEU B:171 , TYR B:177 , TYR B:183 , LEU B:217 , ALA B:223 , MET B:233 , GLN B:234 , THR B:264 , NDP B:524 , HOH B:550 , HOH B:823
BINDING SITE FOR RESIDUE CPS B 525
05
AC5
SOFTWARE
GLY C:41 , SER C:43 , LYS C:44 , GLY C:45 , ILE C:46 , ALA C:65 , ARG C:66 , SER C:67 , THR C:92 , MET C:93 , ASN C:119 , HIS C:120 , ILE C:121 , VAL C:168 , SER C:169 , SER C:170 , TYR C:183 , LYS C:187 , LEU C:215 , GLY C:216 , LEU C:217 , ILE C:218 , THR C:220 , THR C:222 , ALA C:223 , CPS C:527 , HOH C:566 , HOH C:569 , HOH C:625 , HOH C:707 , HOH C:793 , HOH C:834 , HOH C:932 , HOH C:954
BINDING SITE FOR RESIDUE NDP C 526
06
AC6
SOFTWARE
ILE C:121 , THR C:124 , LEU C:171 , TYR C:177 , TYR C:183 , LEU C:217 , ALA C:223 , MET C:233 , GLN C:234 , THR C:264 , NDP C:526 , HOH C:801 , HOH C:872 , TYR D:280 , HOH D:897
BINDING SITE FOR RESIDUE CPS C 527
07
AC7
SOFTWARE
GLY D:41 , SER D:43 , LYS D:44 , GLY D:45 , ILE D:46 , ALA D:65 , ARG D:66 , SER D:67 , THR D:92 , MET D:93 , ASN D:119 , HIS D:120 , ILE D:121 , VAL D:168 , SER D:169 , SER D:170 , TYR D:183 , LYS D:187 , LEU D:215 , GLY D:216 , LEU D:217 , ILE D:218 , THR D:220 , THR D:222 , ALA D:223 , CPS D:529 , HOH D:560 , HOH D:576 , HOH D:603 , HOH D:606 , HOH D:635 , HOH D:829 , HOH D:965
BINDING SITE FOR RESIDUE NDP D 528
08
AC8
SOFTWARE
TYR C:280 , HOH C:708 , ILE D:121 , LEU D:171 , TYR D:177 , TYR D:183 , LEU D:217 , ALA D:223 , MET D:233 , GLN D:234 , NDP D:528 , HOH D:584 , HOH D:796 , HOH D:884
BINDING SITE FOR RESIDUE CPS D 529
09
AC9
SOFTWARE
PRO A:271 , SER A:272 , ILE A:275 , HOH A:998 , LEU C:266 , PRO C:271 , SER D:272
BINDING SITE FOR RESIDUE CPS A 1
10
BC1
SOFTWARE
LEU A:266 , SER B:272 , PRO C:271 , SER C:272 , ILE C:275
BINDING SITE FOR RESIDUE CPS C 2
[
close Site info
]
SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035845 (V148E, chain A/B/C/D, )
2: VAR_DHI1_HUMAN_CCDS1489_1_01 (V148E, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035845
V
148
E
DHI1_HUMAN
Unclassified
---
A/B/C/D
V
148
E
2
CancerSNP
VAR_DHI1_HUMAN_CCDS1489_1_01
*
V
148
E
DHI1_HUMAN
Disease (Breast cancer)
---
A/B/C/D
V
148
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_SHORT (A:170-198,B:170-198,C:170-198,D:17...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_SHORT
PS00061
Short-chain dehydrogenases/reductases family signature.
DHI1_HUMAN
170-198
4
A:170-198
B:170-198
C:170-198
D:170-198
[
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Exons
(6, 24)
Info
All Exons
Exon 1.2b (A:21-30 | B:21-30 | C:21-30 | D:21...)
Exon 1.3 (A:30-73 | B:30-73 | C:30-73 | D:30...)
Exon 1.4 (A:74-111 | B:74-111 | C:74-111 | D...)
Exon 1.5 (A:111-173 | B:111-173 | C:111-173 ...)
Exon 1.6 (A:173-221 | B:173-221 | C:173-221 ...)
Exon 1.7a (A:221-283 | B:221-282 | C:221-282 ...)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1a/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7a
7: Boundary 1.7a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000367028
1a
ENSE00001443288
chr1:
209859510-209859630
121
DHI1_HUMAN
-
0
0
-
-
1.2b
ENST00000367028
2b
ENSE00001443287
chr1:
209878240-209878375
136
DHI1_HUMAN
1-30
30
4
A:21-30
B:21-30
C:21-30
D:21-30
10
10
10
10
1.3
ENST00000367028
3
ENSE00000792110
chr1:
209879156-209879286
131
DHI1_HUMAN
30-73
44
4
A:30-73
B:30-73
C:30-73
D:30-73
44
44
44
44
1.4
ENST00000367028
4
ENSE00000792111
chr1:
209880054-209880165
112
DHI1_HUMAN
74-111
38
4
A:74-111
B:74-111
C:74-111
D:74-111
38
38
38
38
1.5
ENST00000367028
5
ENSE00000792112
chr1:
209880288-209880473
186
DHI1_HUMAN
111-173
63
4
A:111-173
B:111-173
C:111-173
D:111-173
63
63
63
63
1.6
ENST00000367028
6
ENSE00000792113
chr1:
209905781-209905924
144
DHI1_HUMAN
173-221
49
4
A:173-221
B:173-221
C:173-221
D:173-221
49
49
49
49
1.7a
ENST00000367028
7a
ENSE00001443286
chr1:
209907649-209908209
561
DHI1_HUMAN
221-292
72
4
A:221-283
B:221-282
C:221-282
D:221-281
63
62
62
61
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1xu7a_ (A:)
1b: SCOP_d1xu7c_ (C:)
1c: SCOP_d1xu7d_ (D:)
1d: SCOP_d1xu7b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Tyrosine-dependent oxidoreductases
(503)
Protein domain
:
11-beta-hydroxysteroid dehydrogenase 1
(34)
Human (Homo sapiens) [TaxId: 9606]
(25)
1a
d1xu7a_
A:
1b
d1xu7c_
C:
1c
d1xu7d_
D:
1d
d1xu7b_
B:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1xu7D00 (D:21-281)
1b: CATH_1xu7B00 (B:21-282)
1c: CATH_1xu7C00 (C:21-282)
1d: CATH_1xu7A00 (A:21-283)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1xu7D00
D:21-281
1b
1xu7B00
B:21-282
1c
1xu7C00
C:21-282
1d
1xu7A00
A:21-283
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Chain D
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