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(-) Description

Title :  CRYSTAL STRUCTURE OF CASPASE-7 DEVE PEPTIDE COMPLEX
 
Authors :  J. E. Seaman, O. Julien, P. S. Lee, T. J. Rettenmaier, N. D. Thomsen, J. A.
Date :  22 Feb 16  (Deposition) - 20 Jul 16  (Release) - 05 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,E  (1x)
Biol. Unit 2:  C,D,F  (1x)
Keywords :  Apoptosis, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. E. Seaman, O. Julien, P. S. Lee, T. J. Rettenmaier, N. D. Thomsen, J. A. Wells
Cacidases: Caspases Can Cleave After Aspartate, Glutamate And Phosphoserine Residues.
Cell Death Differ. V. 23 1717 2016
PubMed-ID: 27367566  |  Reference-DOI: 10.1038/CDD.2016.62

(-) Compounds

Molecule 1 - CASPASE-7 SUBUNIT P20
    ChainsA, C
    EC Number3.4.22.60
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCASP7, MCH3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCASP-7,APOPTOTIC PROTEASE MCH-3,CMH-1,ICE-LIKE APOPTOTIC PROTEASE 3,ICE-LAP3
 
Molecule 2 - CASPASE-7 SUBUNIT P11
    ChainsB, D
    EC Number3.4.22.60
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneCASP7, MCH3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCASP-7,APOPTOTIC PROTEASE MCH-3,CMH-1,ICE-LIKE APOPTOTIC PROTEASE 3,ICE-LAP3
 
Molecule 3 - DEVE PEPTIDE
    ChainsE, F
    EngineeredYES
    Organism ScientificSYNTHETIC CONSTRUCT
    Organism Taxid32630
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)AB  E 
Biological Unit 2 (1x)  CD F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MKE2Mod. Amino Acid(4S)-4-AMINO-5-OXOHEXANOIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MKE1Mod. Amino Acid(4S)-4-AMINO-5-OXOHEXANOIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MKE1Mod. Amino Acid(4S)-4-AMINO-5-OXOHEXANOIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 5IC6)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IC6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IC6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IC6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IC6)

(-) Exons   (0, 0)

(no "Exon" information available for 5IC6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeee....hhhhh.....hhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhh.....eeeeeeeee..ee..eeee..eeeehhhhhhhhh...hhhhh...eeeeee............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ic6 A  57 TYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQ 196
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196

Chain B from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeee........eee...eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh................eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 5ic6 B 212 KIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYF 301
                                   221       231       241       251       261       271       281       291       301

Chain C from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeee....hhhhh.....hhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhh.....eeeeeeeee..ee..eeee..eeeehhhhhhhhh...hhhhh...eeeeee...eee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ic6 C  57 TYQYNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDGVTPIKDLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQ 196
                                    66        76        86        96       106       116       126       136       146       156       166       176       186       196

Chain D from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeee....ee..eee...eehhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh................eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 5ic6 D 212 KIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTKELYF 301
                                   221       231       241       251       261       271       281       291       301

Chain E from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .ee. Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 5ic6 E   1 DEVx   4
                               |
                               4-MKE

Chain F from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .ee. Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 5ic6 F   1 DEVx   4
                               |
                               |
                               4-MKE

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IC6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IC6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IC6)

(-) Gene Ontology  (15, 15)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CASP7_HUMAN | P552101f1j 1gqf 1i4o 1i51 1k86 1k88 1kmc 1mia 1shj 1shl 2ql5 2ql7 2ql9 2qlb 2qlf 2qlj 3edr 3h1p 3ibc 3ibf 3r5k 4fdl 4fea 4hq0 4hqr 4jb8 4jj8 4jr1 4jr2 4lsz 4zvo 4zvp 4zvq 4zvr 4zvs 4zvt 4zvu 5k20

(-) Related Entries Specified in the PDB File

5ic4