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1KMC
Asym. Unit
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Asym.Unit (90 KB)
Biol.Unit 1 (83 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CASPASE-7 / XIAP-BIR2 COMPLEX
Authors
:
S. J. Riedl, G. S. Salvesen, W. Bode
Date
:
14 Dec 01 (Deposition) - 16 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Complex, Iap, Caspase, Apoptosis, Bir, Apoptosis/Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Riedl, G. S. Salvesen, W. Bode
Crystal Structure Of The Caspase-7 / Xiap-Bir2 Complex
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_048618 (D363E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_048618
D
255
E
CASP7_HUMAN
Polymorphism
2227310
A/B
D
363
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(4, 8)
Info
All PROSITE Patterns/Profiles
1: CASPASE_P20 (A:162-289,B:162-289)
2: CASPASE_HIS (A:224-238,B:224-238)
3: CASPASE_CYS (A:276-287,B:276-287)
4: CASPASE_P10 (A:318-402,B:318-401)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CASPASE_P20
PS50208
Caspase family p20 domain profile.
CASP7_HUMAN
66-190
2
A:162-289
B:162-289
2
CASPASE_HIS
PS01121
Caspase family histidine active site.
CASP7_HUMAN
131-145
2
A:224-238
B:224-238
3
CASPASE_CYS
PS01122
Caspase family cysteine active site.
CASP7_HUMAN
177-188
2
A:276-287
B:276-287
4
CASPASE_P10
PS50207
Caspase family p10 domain profile.
CASP7_HUMAN
209-303
2
A:318-402
B:318-401
[
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Exons
(6, 12)
Info
All Exons
Exon 1.6b (A:150-175C (gaps) | B:149-175C (ga...)
Exon 1.7d (A:175C-218 | B:175C-218)
Exon 1.8c (A:218-283 (gaps) | B:218-283 (gaps...)
Exon 1.10b (A:284-336 (gaps) | B:284-336 (gaps...)
Exon 1.11c (A:336-402 (gaps) | B:336-401 (gaps...)
Exon 2.3c (C:134-150 | D:134-150)
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All Exon Boundaries
1: Boundary 1.4b/1.6b
2: Boundary 1.6b/1.7d
3: Boundary 1.7d/1.8c
4: Boundary 1.8c/1.10b
5: Boundary 1.10b/1.11c
6: Boundary 1.11c/-
7: Boundary 2.2a/2.3c
8: Boundary 2.3c/2.4b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000369318
2c
ENSE00001832746
chr10:
115439636-115439737
102
CASP7_HUMAN
-
0
0
-
-
1.4b
ENST00000369318
4b
ENSE00001749353
chr10:
115457253-115457362
110
CASP7_HUMAN
1-37
37
0
-
-
1.6b
ENST00000369318
6b
ENSE00001096780
chr10:
115480791-115480927
137
CASP7_HUMAN
37-83
47
2
A:150-175C (gaps)
B:149-175C (gaps)
31
32
1.7d
ENST00000369318
7d
ENSE00001096775
chr10:
115481410-115481538
129
CASP7_HUMAN
83-126
44
2
A:175C-218
B:175C-218
44
44
1.8c
ENST00000369318
8c
ENSE00001096779
chr10:
115485121-115485296
176
CASP7_HUMAN
126-184
59
2
A:218-283 (gaps)
B:218-283 (gaps)
66
66
1.10b
ENST00000369318
10b
ENSE00001656181
chr10:
115486064-115486193
130
CASP7_HUMAN
185-228
44
2
A:284-336 (gaps)
B:284-336 (gaps)
53
53
1.11c
ENST00000369318
11c
ENSE00001591443
chr10:
115489070-115490662
1593
CASP7_HUMAN
228-303
76
2
A:336-402 (gaps)
B:336-401 (gaps)
86
85
2.2a
ENST00000371199
2a
ENSE00001810722
X:122993877-122994143
267
XIAP_HUMAN
-
0
0
-
-
2.3c
ENST00000371199
3c
ENSE00002176074
X:123019481-123020389
909
XIAP_HUMAN
1-293
293
2
C:134-150
D:134-150
17
17
2.4b
ENST00000371199
4b
ENSE00001649641
X:123022469-123022568
100
XIAP_HUMAN
293-326
34
0
-
-
2.5b
ENST00000371199
5b
ENSE00001630752
X:123025088-123025166
79
XIAP_HUMAN
326-352
27
0
-
-
2.6
ENST00000371199
6
ENSE00001714518
X:123026581-123026623
43
XIAP_HUMAN
353-367
15
0
-
-
2.7b
ENST00000371199
7b
ENSE00001653318
X:123034343-123034543
201
XIAP_HUMAN
367-434
68
0
-
-
2.8e
ENST00000371199
8e
ENSE00001454620
X:123040838-123047829
6992
XIAP_HUMAN
434-497
64
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1kmca_ (A:)
1b: SCOP_d1kmcb_ (B:)
2a: SCOP_d1kmcc_ (C:)
2b: SCOP_d1kmcd_ (D:)
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Protein Domains
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Caspase-like
(92)
Superfamily
:
Caspase-like
(92)
Family
:
Caspase catalytic domain
(76)
Protein domain
:
Caspase-7
(12)
Human (Homo sapiens) [TaxId: 9606]
(12)
1a
d1kmca_
A:
1b
d1kmcb_
B:
Class
:
Peptides
(792)
Fold
:
IAP fragments
(1)
Superfamily
:
IAP fragments
(1)
Family
:
IAP fragments
(1)
Protein domain
:
IAP fragments
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1kmcc_
C:
2b
d1kmcd_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1kmcA00 (A:150-402)
1b: CATH_1kmcB00 (B:149-401)
2a: CATH_1kmcC00 (C:134-150)
2b: CATH_1kmcD00 (D:134-150)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1460, no name defined]
(93)
Human (Homo sapiens)
(87)
1a
1kmcA00
A:150-402
1b
1kmcB00
B:149-401
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Black beetle virus capsid protein
(7)
Homologous Superfamily
:
[code=4.10.180.30, no name defined]
(3)
Human (Homo sapiens)
(3)
2a
1kmcC00
C:134-150
2b
1kmcD00
D:134-150
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C14_1kmcB01 (B:163-400)
1b: PFAM_Peptidase_C14_1kmcB02 (B:163-400)
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Clan
:
Peptidase_CD
(53)
Family
:
Peptidase_C14
(53)
Homo sapiens (Human)
(51)
1a
Peptidase_C14-1kmcB01
B:163-400
1b
Peptidase_C14-1kmcB02
B:163-400
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