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(-) Description

Title :  HETEROTRIMERIC COMPLEX OF A GT-ALPHA/GI-ALPHA CHIMERA AND THE GT-BETA-GAMMA SUBUNITS
 
Authors :  D. G. Lambright, J. Sondek, A. Bohm, N. P. Skiba, H. E. Hamm, P. B. Sigler
Date :  07 Aug 96  (Deposition) - 12 Mar 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B,G
Keywords :  Complex (Gtp-Binding/Transducer), G Protein, Heterotrimer Signal Transduction (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. G. Lambright, J. Sondek, A. Bohm, N. P. Skiba, H. E. Hamm, P. B. Sigler
The 2. 0 A Crystal Structure Of A Heterotrimeric G Protein.
Nature V. 379 311 1996
PubMed-ID: 8552184  |  Reference-DOI: 10.1038/379311A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GT-ALPHA/GI-ALPHA CHIMERA
    CellROD
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET VECTOR
    Expression System StrainPET
    Expression System Taxid562
    Expression System Vector TypePET
    Fragment216 - 294
    OrganEYE
    OrganelleROD OUTER SEGMENT
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    Other DetailsTHIS IS A CHIMERIC PROTEIN WHERE RESIDUES 216-294 OF BOVINE GT ALPHA HAVE BEEN REPLACED WITH RESIDUES 220-298 OF RAT GI ALPHA 1
    Other Details - SourceT7 LAC PROMOTER
    TissueRETINA
 
Molecule 2 - GT-BETA
    CellROD
    ChainsB
    EngineeredYES
    OrganEYE
    OrganelleROD OUTER SEGMENT
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymBETA1, TRANSDUCIN BETA SUBUNIT
    TissueRETINA
 
Molecule 3 - GT-GAMMA
    CellROD
    ChainsG
    EngineeredYES
    OrganEYE
    OrganelleROD OUTER SEGMENT
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    Other DetailsGT-BETA-GAMMA WAS TREATED WITH ENDOPROTEASE- LYSC TO REMOVE THE THREE C-TERMINAL AMINO ACIDS AND THE TERMINAL FARNESYL MOIETY OF GAMMA
    SynonymGAMMA1, TRANSDUCIN GAMMA SUBUNIT
    TissueRETINA

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric/Biological Unit (2, 13)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
2MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:38 , GLU A:39 , SER A:40 , GLY A:41 , LYS A:42 , SER A:43 , THR A:44 , ASP A:146 , SER A:147 , LEU A:171 , ARG A:172 , ARG A:174 , ASN A:265 , LYS A:266 , ASP A:268 , LEU A:269 , CYS A:321 , ALA A:322 , THR A:323 , HOH A:369 , HOH A:563 , HOH G:358 , HOH G:359 , HOH G:367BINDING SITE FOR RESIDUE GDP G 355

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GOT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GOT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GOT)

(-) PROSITE Motifs  (1, 3)

Asymmetric/Biological Unit (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WD_REPEATS_1PS00678 Trp-Asp (WD) repeats signature.GBB1_BOVIN70-84
157-171
285-299
  3B:70-84
B:157-171
B:285-299

(-) Exons   (19, 19)

Asymmetric/Biological Unit (19, 19)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENSBTAT000000034651bENSBTAE00000365422chr4:11462618-1146267760GBG1_BOVIN-00--
1.1cENSBTAT000000034651cENSBTAE00000276323chr4:11462769-11462871103GBG1_BOVIN1-32321G:9-3224
1.2ENSBTAT000000034652ENSBTAE00000027869chr4:11468951-11469221271GBG1_BOVIN33-74421G:33-6634

2.1ENSBTAT000000239901ENSBTAE00000247883chr22:51063839-51063597243GNAT1_BOVIN1-36361A:6-3631
2.2ENSBTAT000000239902ENSBTAE00000388493chr22:51062405-5106236343GNAT1_BOVIN36-50151A:36-5015
2.3ENSBTAT000000239903ENSBTAE00000247881chr22:51062224-51062083142GNAT1_BOVIN50-97481A:50-9748
2.4ENSBTAT000000239904ENSBTAE00000247880chr22:51061992-51061835158GNAT1_BOVIN98-150531A:98-15053
2.5ENSBTAT000000239905ENSBTAE00000195357chr22:51061741-51061613129GNAT1_BOVIN150-193441A:150-19344
2.6ENSBTAT000000239906ENSBTAE00000419260chr22:51061351-51061222130GNAT1_BOVIN193-236441A:193-23644
2.7ENSBTAT000000239907ENSBTAE00000195359chr22:51060899-51060746154GNAT1_BOVIN237-288521A:237-28852
2.8ENSBTAT000000239908ENSBTAE00000195360chr22:51060623-51060432192GNAT1_BOVIN288-350631A:288-34356
2.9ENSBTAT000000239909ENSBTAE00000195361chr22:51060077-510588251253GNAT1_BOVIN-00--

3.1ENSBTAT000000450651ENSBTAE00000334067chr16:48127959-48128171213GBB1_BOVIN-00--
3.3ENSBTAT000000450653ENSBTAE00000002006chr16:48183972-48184074103GBB1_BOVIN1-19191B:2-1918
3.4ENSBTAT000000450654ENSBTAE00000002007chr16:48187973-4818801139GBB1_BOVIN20-32131B:20-3213
3.5ENSBTAT000000450655ENSBTAE00000376692chr16:48189546-48189652107GBB1_BOVIN33-68361B:33-6836
3.6ENSBTAT000000450656ENSBTAE00000386769chr16:48193508-4819357164GBB1_BOVIN68-89221B:68-8922
3.7ENSBTAT000000450657ENSBTAE00000002010chr16:48194640-48194802163GBB1_BOVIN90-144551B:90-14455
3.8ENSBTAT000000450658ENSBTAE00000394803chr16:48200709-4820077567GBB1_BOVIN144-166231B:144-16623
3.9ENSBTAT000000450659ENSBTAE00000002012chr16:48202132-48202333202GBB1_BOVIN166-233681B:166-23368
3.10ENSBTAT0000004506510ENSBTAE00000388531chr16:48203047-48203263217GBB1_BOVIN234-306731B:234-30673
3.11ENSBTAT0000004506511ENSBTAE00000002014chr16:48203934-48204049116GBB1_BOVIN306-340351B:306-34035
3.12bENSBTAT0000004506512bENSBTAE00000334058chr16:48204269-482059161648GBB1_BOVIN-00--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:338
 aligned with GNAT1_BOVIN | P04695 from UniProtKB/Swiss-Prot  Length:350

    Alignment length:338
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335        
          GNAT1_BOVIN     6 SAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQMKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAMTTLNIQYGDSARQDDARKLMHMADTIEEGTMPKEMSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHRYFATTSIVLFLNKKDVFSEKIKKAHLSICFPDYNGPNTYEDAGNYIKVQFLELNMRRDVKEIYSHMTCATDTQNVKFVFDAVTDIIIKEN 343
               SCOP domains d1gota2 A:6-60,A:182-343 Transducin (alpha subunit)    d1gota1 A:61-181 Transducin (alpha subunit), insertion domain                                                            d1gota2 A:6-60,A:182-343 Transducin (alpha subunit)                                                                                                                SCOP domains
               CATH domains 1gotA01 A:6-57,A:177-331                            1gotA02 A:58-176 GI Alpha 1, domain 2-like                                                                             1gotA01 A:6-57,A:177-331 P-loop containing nucleotide triphosphate hydrolases                                                                              ------------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhheeeeeeee.....hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh........hhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhh.......hhhhh.........eeeeeee..eeeeeee.......hhh.hhhh....eeeeeeehhhhh..........hhhhhhhhhhhhh..hhh...eeeeeee.hhhhhhhhh...hhh..........hhhhhhhhhhhhhhh.........eeee.....hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.1  PDB: A:6-36          -------------Exon 2.3  PDB: A:50-97 UniProt: 50-97           Exon 2.4  PDB: A:98-150 UniProt: 98-150              ------------------------------------------Exon 2.6  PDB: A:193-236 UniProt: 193-236   Exon 2.7  PDB: A:237-288 UniProt: 237-288           ------------------------------------------------------- Transcript 2 (1)
           Transcript 2 (2) ------------------------------Exon 2.2       ---------------------------------------------------------------------------------------------------Exon 2.5  PDB: A:150-193 UniProt: 150-193   ----------------------------------------------------------------------------------------------Exon 2.8  PDB: A:288-343 UniProt: 288-350 [INCOMPLETE]   Transcript 2 (2)
                 1got A   6 SAEEKHSRELEKKLKEDAEKDARTVKLLLLGAGESGKSTIVKQmKIIHQDGYSLEECLEFIAIIYGNTLQSILAIVRAmTTLNIQYGDSARQDDARKLmHmADTIEEGTmPKEmSDIIQRLWKDSGIQACFDRASEYQLNDSAGYYLSDLERLVTPGYVPTEQDVLRSRVKTTGIIETQFSFKDLNFRmFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEmNRmHESmKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAGNYIKVQFLELNmRRDVKEIYSHmTCATDTQNVKFVFDAVTDIIIKEN 343
                                    15        25        35        45   |    55        65        75        85        95       105|      115   |   125       135       145       155       165       175       185       195       205       215       225       235|  |   245       255       265       275       285       295       305  |    315   |   325       335        
                                                                      49-MSE                             84-MSE             104-MSE    115-MSE                                                                        194-MSE                                   236-MSE  |                                                              308-MSE    319-MSE                    
                                                                                                                              106-MSE      119-MSE                                                                                                                 239-MSE                                                                                                    
                                                                                                                                                                                                                                                                       243-MSE                                                                                                

Chain B from PDB  Type:PROTEIN  Length:339
 aligned with GBB1_BOVIN | P62871 from UniProtKB/Swiss-Prot  Length:340

    Alignment length:339
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331         
           GBB1_BOVIN     2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
               SCOP domains d1gotb_ B: beta1-subunit of the signal-transducing G protein heterotrimer                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1gotB00 B:2-340 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhh....hhhh.............eeeee......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee.....eeeeee...eeeeee........eeeeeee.....eeeeee....eeeeee....eeeee....eeeeee......eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee....eeeeee........eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee......eeeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------WD_REPEATS_1   ------------------------------------------------------------------------WD_REPEATS_1   -----------------------------------------------------------------------------------------------------------------WD_REPEATS_1   ----------------------------------------- PROSITE
           Transcript 3 (1) Exon 3.3          Exon 3.4     Exon 3.5  PDB: B:33-68              ---------------------Exon 3.7  PDB: B:90-144 UniProt: 90-144                ---------------------Exon 3.9  PDB: B:166-233 UniProt: 166-233                           Exon 3.10  PDB: B:234-306 UniProt: 234-306                               ---------------------------------- Transcript 3 (1)
           Transcript 3 (2) ------------------------------------------------------------------Exon 3.6  PDB: B:68-89------------------------------------------------------Exon 3.8  PDB: B:144-16-------------------------------------------------------------------------------------------------------------------------------------------Exon 3.11  PDB: B:306-340           Transcript 3 (2)
                 1got B   2 SELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331         

Chain G from PDB  Type:PROTEIN  Length:58
 aligned with GBG1_BOVIN | P02698 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:58
                                    18        28        38        48        58        
           GBG1_BOVIN     9 LTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE  66
               SCOP domains d1gotg_ G:                                                 SCOP domains
               CATH domains 1gotG00 G:9-66  [code=4.10.260.10, no name defined]        CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhh...hhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1c  PDB: G:9-32  Exon 1.2  PDB: G:33-66             Transcript 1
                 1got G   9 LTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKE  66
                                    18        28        38        48        58        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (4, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GOT)

(-) Gene Ontology  (49, 71)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (GNAT1_BOVIN | P04695)
molecular function
    GO:0031683    G-protein beta/gamma-subunit complex binding    Interacting selectively and non-covalently with a complex of G-protein beta/gamma subunits.
    GO:0001664    G-protein coupled receptor binding    Interacting selectively and non-covalently with a G-protein coupled receptor.
    GO:0019003    GDP binding    Interacting selectively and non-covalently with GDP, guanosine 5'-diphosphate.
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000035    acyl binding    Interacting selectively and non-covalently with an acyl group, any group formally derived by removal of the hydroxyl group from the acid function of a carboxylic acid.
    GO:0019001    guanyl nucleotide binding    Interacting selectively and non-covalently with guanyl nucleotides, any compound consisting of guanosine esterified with (ortho)phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007188    adenylate cyclase-modulating G-protein coupled receptor signaling pathway    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds through activation or inhibition of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP (cAMP).
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0071257    cellular response to electrical stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus.
    GO:0050908    detection of light stimulus involved in visual perception    The series of events involved in visual perception in which a light stimulus is received and converted into a molecular signal.
    GO:0042462    eye photoreceptor cell development    Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve.
    GO:0051344    negative regulation of cyclic-nucleotide phosphodiesterase activity    Any process that stops or reduces the rate of cyclic nucleotide phosphodiesterase activity, the catalysis of the reaction: nucleotide 3',5'-cyclic phosphate + H2O = nucleotide 5'-phosphate.
    GO:0007602    phototransduction    The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
    GO:0007603    phototransduction, visible light    The sequence of reactions within a cell required to convert absorbed photons from visible light into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm.
    GO:0022400    regulation of rhodopsin mediated signaling pathway    Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
    GO:0009416    response to light stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
    GO:0050896    response to stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus and ends with a change in state or activity or the cell or organism.
    GO:0060041    retina development in camera-type eye    The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
    GO:0016056    rhodopsin mediated signaling pathway    The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events that convert the absorbed photons into a cellular response.
    GO:0050917    sensory perception of umami taste    The series of events required to receive an umami taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. Umami taste is the savory taste of meats and other foods that are rich in glutamates. This is a neurological process.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0007601    visual perception    The series of events required for an organism to receive a visual stimulus, convert it to a molecular signal, and recognize and characterize the signal. Visual stimuli are detected in the form of photons and are processed to form an image.
cellular component
    GO:0005834    heterotrimeric G-protein complex    Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein.
    GO:0032391    photoreceptor connecting cilium    The portion of the photoreceptor cell cilium linking the photoreceptor inner and outer segments. It's considered to be equivalent to the ciliary transition zone.
    GO:0097381    photoreceptor disc membrane    Ovally-shaped membranous stack located inside the photoreceptor outer segment, and containing densely packed molecules of the photoreceptor protein rhodopsin that traverse the lipid bilayer. Disc membranes are apparently derived from the plasma membrane in the region of the cilium that connects the photoreceptor outer segment to the inner segment.
    GO:0001917    photoreceptor inner segment    The inner segment of a vertebrate photoreceptor containing mitochondria, ribosomes and membranes where opsin molecules are assembled and passed to be part of the outer segment discs.
    GO:0001750    photoreceptor outer segment    The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes.
    GO:0042622    photoreceptor outer segment membrane    The membrane surrounding the outer segment of a vertebrate photoreceptor.

Chain B   (GBB1_BOVIN | P62871)
molecular function
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0051020    GTPase binding    Interacting selectively and non-covalently with a GTPase, any enzyme that catalyzes the hydrolysis of GTP.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0032403    protein complex binding    Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0007191    adenylate cyclase-activating dopamine receptor signaling pathway    The series of molecular signals generated as a consequence of a dopamine receptor binding to its physiological ligand, where the pathway proceeds with activation of adenylyl cyclase and a subsequent increase in the concentration of cyclic AMP (cAMP).
    GO:0008283    cell proliferation    The multiplication or reproduction of cells, resulting in the expansion of a cell population.
    GO:0071870    cellular response to catecholamine stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a catecholamine stimulus. A catecholamine is any of a group of biogenic amines that includes 4-(2-aminoethyl)pyrocatechol [4-(2-aminoethyl)benzene-1,2-diol] and derivatives formed by substitution.
    GO:0071380    cellular response to prostaglandin E stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a prostagladin E stimulus.
    GO:0007200    phospholipase C-activating G-protein coupled receptor signaling pathway    The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of phospholipase C (PLC) and a subsequent increase in the concentration of inositol trisphosphate (IP3) and diacylglycerol (DAG).
    GO:0022400    regulation of rhodopsin mediated signaling pathway    Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
    GO:0060041    retina development in camera-type eye    The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
    GO:0016056    rhodopsin mediated signaling pathway    The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events that convert the absorbed photons into a cellular response.
    GO:0050909    sensory perception of taste    The series of events required for an organism to receive a gustatory stimulus, convert it to a molecular signal, and recognize and characterize the signal. Gustation involves the direct detection of chemical composition, usually through contact with chemoreceptor cells. This is a neurological process.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:1903561    extracellular vesicle    Any vesicle that is part of the extracellular region.
    GO:0005834    heterotrimeric G-protein complex    Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0097381    photoreceptor disc membrane    Ovally-shaped membranous stack located inside the photoreceptor outer segment, and containing densely packed molecules of the photoreceptor protein rhodopsin that traverse the lipid bilayer. Disc membranes are apparently derived from the plasma membrane in the region of the cilium that connects the photoreceptor outer segment to the inner segment.
    GO:0001750    photoreceptor outer segment    The outer segment of a vertebrate photoreceptor that contains discs of photoreceptive membranes.

Chain G   (GBG1_BOVIN | P02698)
molecular function
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
biological process
    GO:0007186    G-protein coupled receptor signaling pathway    A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576).
    GO:0042462    eye photoreceptor cell development    Development of a photoreceptor, a sensory cell in the eye that reacts to the presence of light. They usually contain a pigment that undergoes a chemical change when light is absorbed, thus stimulating a nerve.
    GO:0007602    phototransduction    The sequence of reactions within a cell required to convert absorbed photons into a molecular signal.
    GO:0008104    protein localization    Any process in which a protein is transported to, or maintained in, a specific location.
    GO:0022400    regulation of rhodopsin mediated signaling pathway    Any process that modulates the frequency, rate or extent of rhodopsin-mediated signaling.
    GO:0016056    rhodopsin mediated signaling pathway    The series of molecular signals generated as a consequence of excitation of rhodopsin by a photon and the events that convert the absorbed photons into a cellular response.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005834    heterotrimeric G-protein complex    Any of a family of heterotrimeric GTP-binding and hydrolyzing proteins; they belong to a superfamily of GTPases that includes monomeric proteins such as EF-Tu and RAS. Heterotrimeric G-proteins consist of three subunits; the alpha subunit contains the guanine nucleotide binding site and possesses GTPase activity; the beta and gamma subunits are tightly associated and function as a beta-gamma heterodimer; extrinsic plasma membrane proteins (cytoplasmic face) that function as a complex to transduce signals from G-protein coupled receptors to an effector protein.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0097381    photoreceptor disc membrane    Ovally-shaped membranous stack located inside the photoreceptor outer segment, and containing densely packed molecules of the photoreceptor protein rhodopsin that traverse the lipid bilayer. Disc membranes are apparently derived from the plasma membrane in the region of the cilium that connects the photoreceptor outer segment to the inner segment.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GBB1_BOVIN | P628711a0r 1b9x 1b9y 1gg2 1gp2 1omw 1tbg 1xhm 2bcj 2trc 3ah8 3cik 3krw 3krx 3psc 3pvu 3pvw 3uzs 3v5w 4mk0 5kdo
        GBG1_BOVIN | P026981a0r 1b9x 1b9y 1mf6 1tbg 2trc 5kdo
        GNAT1_BOVIN | P046951aqg 1fqj 1fqk 1lvz 1tad 1tag 1tnd 2x72 3dqb 3pqr 3v00 4bey 4j4q

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1GOT)