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1GOT
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
HETEROTRIMERIC COMPLEX OF A GT-ALPHA/GI-ALPHA CHIMERA AND THE GT-BETA-GAMMA SUBUNITS
Authors
:
D. G. Lambright, J. Sondek, A. Bohm, N. P. Skiba, H. E. Hamm, P. B. Sigler
Date
:
07 Aug 96 (Deposition) - 12 Mar 97 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,G
Biol. Unit 1: A,B,G (1x)
Keywords
:
Complex (Gtp-Binding/Transducer), G Protein, Heterotrimer Signal Transduction
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. G. Lambright, J. Sondek, A. Bohm, N. P. Skiba, H. E. Hamm, P. B. Sigler
The 2. 0 A Crystal Structure Of A Heterotrimeric G Protein.
Nature V. 379 311 1996
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:38 , GLU A:39 , SER A:40 , GLY A:41 , LYS A:42 , SER A:43 , THR A:44 , ASP A:146 , SER A:147 , LEU A:171 , ARG A:172 , ARG A:174 , ASN A:265 , LYS A:266 , ASP A:268 , LEU A:269 , CYS A:321 , ALA A:322 , THR A:323 , HOH A:369 , HOH A:563 , HOH G:358 , HOH G:359 , HOH G:367
BINDING SITE FOR RESIDUE GDP G 355
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (B:70-84|B:157-171|B:285-299)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBB1_BOVIN
70-84
157-171
285-299
3
B:70-84
B:157-171
B:285-299
[
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Exons
(19, 19)
Info
All Exons
Exon 1.1c (G:9-32)
Exon 1.2 (G:33-66)
Exon 2.1 (A:6-36)
Exon 2.2 (A:36-50)
Exon 2.3 (A:50-97)
Exon 2.4 (A:98-150)
Exon 2.5 (A:150-193)
Exon 2.6 (A:193-236)
Exon 2.7 (A:237-288)
Exon 2.8 (A:288-343)
Exon 3.3 (B:2-19)
Exon 3.4 (B:20-32)
Exon 3.5 (B:33-68)
Exon 3.6 (B:68-89)
Exon 3.7 (B:90-144)
Exon 3.8 (B:144-166)
Exon 3.9 (B:166-233)
Exon 3.10 (B:234-306)
Exon 3.11 (B:306-340)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.1c
02: Boundary 1.1c/1.2
03: Boundary 1.2/-
04: Boundary -/2.1
05: Boundary 2.1/2.2
06: Boundary 2.2/2.3
07: Boundary 2.3/2.4
08: Boundary 2.4/2.5
09: Boundary 2.5/2.6
10: Boundary 2.6/2.7
11: Boundary 2.7/2.8
12: Boundary 2.8/2.9
13: Boundary 3.1/3.3
14: Boundary 3.3/3.4
15: Boundary 3.4/3.5
16: Boundary 3.5/3.6
17: Boundary 3.6/3.7
18: Boundary 3.7/3.8
19: Boundary 3.8/3.9
20: Boundary 3.9/3.10
21: Boundary 3.10/3.11
22: Boundary 3.11/3.12b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENSBTAT00000003465
1b
ENSBTAE00000365422
chr4:
11462618-11462677
60
GBG1_BOVIN
-
0
0
-
-
1.1c
ENSBTAT00000003465
1c
ENSBTAE00000276323
chr4:
11462769-11462871
103
GBG1_BOVIN
1-32
32
1
G:9-32
24
1.2
ENSBTAT00000003465
2
ENSBTAE00000027869
chr4:
11468951-11469221
271
GBG1_BOVIN
33-74
42
1
G:33-66
34
2.1
ENSBTAT00000023990
1
ENSBTAE00000247883
chr22:
51063839-51063597
243
GNAT1_BOVIN
1-36
36
1
A:6-36
31
2.2
ENSBTAT00000023990
2
ENSBTAE00000388493
chr22:
51062405-51062363
43
GNAT1_BOVIN
36-50
15
1
A:36-50
15
2.3
ENSBTAT00000023990
3
ENSBTAE00000247881
chr22:
51062224-51062083
142
GNAT1_BOVIN
50-97
48
1
A:50-97
48
2.4
ENSBTAT00000023990
4
ENSBTAE00000247880
chr22:
51061992-51061835
158
GNAT1_BOVIN
98-150
53
1
A:98-150
53
2.5
ENSBTAT00000023990
5
ENSBTAE00000195357
chr22:
51061741-51061613
129
GNAT1_BOVIN
150-193
44
1
A:150-193
44
2.6
ENSBTAT00000023990
6
ENSBTAE00000419260
chr22:
51061351-51061222
130
GNAT1_BOVIN
193-236
44
1
A:193-236
44
2.7
ENSBTAT00000023990
7
ENSBTAE00000195359
chr22:
51060899-51060746
154
GNAT1_BOVIN
237-288
52
1
A:237-288
52
2.8
ENSBTAT00000023990
8
ENSBTAE00000195360
chr22:
51060623-51060432
192
GNAT1_BOVIN
288-350
63
1
A:288-343
56
2.9
ENSBTAT00000023990
9
ENSBTAE00000195361
chr22:
51060077-51058825
1253
GNAT1_BOVIN
-
0
0
-
-
3.1
ENSBTAT00000045065
1
ENSBTAE00000334067
chr16:
48127959-48128171
213
GBB1_BOVIN
-
0
0
-
-
3.3
ENSBTAT00000045065
3
ENSBTAE00000002006
chr16:
48183972-48184074
103
GBB1_BOVIN
1-19
19
1
B:2-19
18
3.4
ENSBTAT00000045065
4
ENSBTAE00000002007
chr16:
48187973-48188011
39
GBB1_BOVIN
20-32
13
1
B:20-32
13
3.5
ENSBTAT00000045065
5
ENSBTAE00000376692
chr16:
48189546-48189652
107
GBB1_BOVIN
33-68
36
1
B:33-68
36
3.6
ENSBTAT00000045065
6
ENSBTAE00000386769
chr16:
48193508-48193571
64
GBB1_BOVIN
68-89
22
1
B:68-89
22
3.7
ENSBTAT00000045065
7
ENSBTAE00000002010
chr16:
48194640-48194802
163
GBB1_BOVIN
90-144
55
1
B:90-144
55
3.8
ENSBTAT00000045065
8
ENSBTAE00000394803
chr16:
48200709-48200775
67
GBB1_BOVIN
144-166
23
1
B:144-166
23
3.9
ENSBTAT00000045065
9
ENSBTAE00000002012
chr16:
48202132-48202333
202
GBB1_BOVIN
166-233
68
1
B:166-233
68
3.10
ENSBTAT00000045065
10
ENSBTAE00000388531
chr16:
48203047-48203263
217
GBB1_BOVIN
234-306
73
1
B:234-306
73
3.11
ENSBTAT00000045065
11
ENSBTAE00000002014
chr16:
48203934-48204049
116
GBB1_BOVIN
306-340
35
1
B:306-340
35
3.12b
ENSBTAT00000045065
12b
ENSBTAE00000334058
chr16:
48204269-48205916
1648
GBB1_BOVIN
-
0
0
-
-
[
close EXON info
]
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1gotg_ (G:)
2a: SCOP_d1gota1 (A:61-181)
3a: SCOP_d1gotb_ (B:)
4a: SCOP_d1gota2 (A:6-60,A:182-343)
View:
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Family
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Protein domain
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d1gotg_
G:
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(19)
2a
d1gota1
A:61-181
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
beta1-subunit of the signal-transducing G protein heterotrimer
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
3a
d1gotb_
B:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(21)
4a
d1gota2
A:6-60,A:182-343
[
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]
CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1gotA01 (A:6-57,A:177-331)
2a: CATH_1gotG00 (G:9-66)
3a: CATH_1gotA02 (A:58-176)
4a: CATH_1gotB00 (B:2-340)
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(
)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Cattle (bos taurus)
(1)
1a
1gotA01
A:6-57,A:177-331
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
G Protein Gi Gamma 2
(12)
Homologous Superfamily
:
[code=4.10.260.10, no name defined]
(10)
Cattle (bos taurus)
(1)
2a
1gotG00
G:9-66
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Cattle (bos taurus)
(1)
3a
1gotA02
A:58-176
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Cattle (bos taurus)
(1)
4a
1gotB00
B:2-340
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain G
Asymmetric Unit 1
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Asym.Unit (137 KB)
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