No.	Residues
1	A:107	-	A:163
2	B:15	-	B:79
3	B:117	-	B:173
4	D:107	-	D:163
5	E:15	-	E:79
6	E:117	-	E:173
7	G:107	-	G:163
8	H:15	-	H:79
9	H:117	-	H:173
10	J:107	-	J:163
11	K:15	-	K:79
12	K:117	-	K:173
13	M:22	-	M:90
14	P:23	-	P:92
15	P:148	-	P:213
16	Q:22	-	Q:90
17	Q:139	-	Q:189
18	R:23	-	R:92
19	R:148	-	R:213
20	S:22	-	S:90
21	T:23	-	T:92
22	T:148	-	T:213
23	U:22	-	U:90
24	U:139	-	U:189
25	V:23	-	V:92
26	V:148	-	V:213

No.	Residues
1	Asn A:15	-	Pro A:16
2	Thr A:113	-	Pro A:114
3	Tyr B:123	-	Pro B:124
4	Thr P:7	-	Pro P:8
5	Tyr P:154	-	Pro P:155
6	Asn D:15	-	Pro D:16
7	Thr D:113	-	Pro D:114
8	Tyr E:123	-	Pro E:124
9	Thr R:7	-	Pro R:8
10	Tyr R:154	-	Pro R:155
11	Asn G:15	-	Pro G:16
12	Thr G:113	-	Pro G:114
13	Tyr H:123	-	Pro H:124
14	Thr T:7	-	Pro T:8
15	Tyr T:154	-	Pro T:155
16	Asn J:15	-	Pro J:16
17	Thr J:113	-	Pro J:114
18	Tyr K:123	-	Pro K:124
19	Thr V:7	-	Pro V:8
20	Tyr V:154	-	Pro V:155

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_050356	R	33	Q	DRB5_HUMAN	Polymorphism	34716432	B/E/H/K	R	4	Q
02	UniProt	VAR_060954	R	35	C	DRB5_HUMAN	Polymorphism	1136744	B/E/H/K	R	6	C
03	UniProt	VAR_050357	K	41	T	DRB5_HUMAN	Polymorphism	200581589	B/E/H/K	K	12	T
04	UniProt	VAR_060955	H	57	Q	DRB5_HUMAN	Polymorphism	202185589	B/E/H/K	H	28	Q
05	UniProt	VAR_060956	D	59	G	DRB5_HUMAN	Polymorphism	41546317	B/E/H/K	D	30	G
06	UniProt	VAR_060957	D	59	H	DRB5_HUMAN	Polymorphism	707955	B/E/H/K	D	30	H
07	UniProt	VAR_050358	N	62	H	DRB5_HUMAN	Polymorphism	1059576	B/E/H/K	N	33	H
08	UniProt	VAR_060958	D	66	N	DRB5_HUMAN	Polymorphism	77853982	B/E/H/K	D	37	N
09	UniProt	VAR_060959	D	66	Y	DRB5_HUMAN	Polymorphism	77853982	B/E/H/K	D	37	Y
10	UniProt	VAR_060960	L	67	V	DRB5_HUMAN	Polymorphism	1059580	B/E/H/K	L	38	V
11	UniProt	VAR_060961	A	87	E	DRB5_HUMAN	Polymorphism	---	B/E/H/K	A	58	E
12	UniProt	VAR_060962	Y	89	S	DRB5_HUMAN	Polymorphism	41541218	B/E/H/K	Y	60	S
13	UniProt	VAR_060964	F	96	I	DRB5_HUMAN	Polymorphism	41562819	B/E/H/K	F	67	I
14	UniProt	VAR_060963	F	96	L	DRB5_HUMAN	Polymorphism	41562819	B/E/H/K	F	67	L
15	UniProt	VAR_060965	D	99	E	DRB5_HUMAN	Polymorphism	41559913	B/E/H/K	D	70	E
16	UniProt	VAR_060966	D	99	G	DRB5_HUMAN	Polymorphism	41545413	B/E/H/K	D	70	G
17	UniProt	VAR_060967	D	99	H	DRB5_HUMAN	Polymorphism	41547217	B/E/H/K	D	70	H
18	UniProt	VAR_060968	D	99	N	DRB5_HUMAN	Polymorphism	41547217	B/E/H/K	D	70	N
19	UniProt	VAR_060969	D	99	Q	DRB5_HUMAN	Polymorphism	---	B/E/H/K	D	70	Q
20	UniProt	VAR_060970	D	99	R	DRB5_HUMAN	Polymorphism	---	B/E/H/K	D	70	R
21	UniProt	VAR_060971	R	100	A	DRB5_HUMAN	Polymorphism	---	B/E/H/K	R	71	A
22	UniProt	VAR_060972	R	100	G	DRB5_HUMAN	Polymorphism	41551116	B/E/H/K	R	71	G
23	UniProt	VAR_060973	R	100	T	DRB5_HUMAN	Polymorphism	41544215	B/E/H/K	R	71	T
24	UniProt	VAR_060974	A	103	E	DRB5_HUMAN	Polymorphism	1059598	B/E/H/K	A	74	E
25	UniProt	VAR_060975	A	103	L	DRB5_HUMAN	Polymorphism	---	B/E/H/K	A	74	L
26	UniProt	VAR_050359	T	106	N	DRB5_HUMAN	Polymorphism	115817940	B/E/H/K	T	77	N
27	UniProt	VAR_060976	Y	107	V	DRB5_HUMAN	Polymorphism	---	B/E/H/K	Y	78	V
28	UniProt	VAR_060977	V	114	A	DRB5_HUMAN	Polymorphism	1136778	B/E/H/K	V	85	A
29	UniProt	VAR_060978	G	115	V	DRB5_HUMAN	Polymorphism	41556512	B/E/H/K	G	86	V
30	UniProt	VAR_039872	G	154	A	DRB5_HUMAN	Polymorphism	113395425	B/E/H/K	G	125	A
31	UniProt	VAR_060979	S	164	G	DRB5_HUMAN	Polymorphism	1059633	B/E/K	S	135	G
32	UniProt	VAR_060980	T	186	I	DRB5_HUMAN	Polymorphism	41559420	B/E/H/K	T	157	I
SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	IG_MHC	PS00290	Immunoglobulins and major histocompatibility complex proteins signature.	DRA_HUMAN	186-192	4	A:161-167 D:161-167 G:161-167 J:161-167
				DRB5_HUMAN	200-206	4	B:171-177 E:171-177 H:171-177 K:171-177

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2a	ENST00000355994	2a	ENSE00001421865	chr18:74844774-74844536	239	MBP_HUMAN	-	0	0	-	-
1.4	ENST00000355994	4	ENSE00002187900	chr18:74817242-74817167	76	MBP_HUMAN	1-17	17	0	-	-
1.8a	ENST00000355994	8a	ENSE00001400728	chr18:74778341-74778254	88	MBP_HUMAN	18-47	30	0	-	-
1.10e	ENST00000355994	10e	ENSE00001432843	chr18:74729224-74728788	437	MBP_HUMAN	47-192	146	0	-	-
1.13c	ENST00000355994	13c	ENSE00001179369	chr18:74702016-74701912	105	MBP_HUMAN	193-227	35	4	C:1-7 F:1-7 I:2-7 L:1-7	7 7 6 7
1.14e	ENST00000355994	14e	ENSE00001000086	chr18:74700868-74700833	36	MBP_HUMAN	228-239	12	4	C:8-14 (gaps) F:8-13 I:8-14 (gaps) L:8-14 (gaps)	11 6 11 11
1.14g	ENST00000355994	14g	ENSE00001278460	chr18:74700483-74700451	33	MBP_HUMAN	240-250	11	0	-	-
1.14o	ENST00000355994	14o	ENSE00001656901	chr18:74696850-74696731	120	MBP_HUMAN	251-290	40	1	- F:14-15 - -	- 2 - -
1.15l	ENST00000355994	15l	ENSE00001606913	chr18:74692427-74690790	1638	MBP_HUMAN	291-304	14	0	-	-
2.1	ENST00000374975	1	ENSE00001920389	chr6:32498064-32497902	163	DRB5_HUMAN	1-34	34	4	B:1-5 E:2-5 H:1-5 K:1-5	5 4 5 5
2.2	ENST00000374975	2	ENSE00001768120	chr6:32489951-32489682	270	DRB5_HUMAN	34-124	91	4	B:5-95 E:5-95 H:5-95 K:5-95	91 91 91 91
2.3	ENST00000374975	3	ENSE00001641881	chr6:32487428-32487147	282	DRB5_HUMAN	124-218	95	4	B:95-189 (gaps) E:95-189 (gaps) H:95-189 (gaps) K:95-189 (gaps)	95 95 95 95
2.4	ENST00000374975	4	ENSE00001715371	chr6:32486443-32486333	111	DRB5_HUMAN	218-255	38	4	B:189-189 E:189-189 H:189-189 K:189-189	1 1 1 1
2.5	ENST00000374975	5	ENSE00001776788	chr6:32485854-32485831	24	DRB5_HUMAN	255-263	9	0	-	-
2.6	ENST00000374975	6	ENSE00001833430	chr6:32485529-32485120	410	DRB5_HUMAN	263-266	4	0	-	-
3.6a	ENST00000383259	6a	ENSE00001839042	HSCHR6_MHC_QBL:32365090-32365280	191	DRA_HUMAN	1-28	28	0	-	-
3.7b	ENST00000383259	7b	ENSE00001719010	HSCHR6_MHC_QBL:32367694-32367939	246	DRA_HUMAN	28-110	83	4	A:4-85 D:4-85 G:4-85 J:4-85	82 82 82 82
3.8c	ENST00000383259	8c	ENSE00001737588	HSCHR6_MHC_QBL:32368431-32368712	282	DRA_HUMAN	110-204	95	4	A:85-179 D:85-179 G:85-179 J:85-179	95 95 95 95
3.9a	ENST00000383259	9a	ENSE00001770912	HSCHR6_MHC_QBL:32369002-32369167	166	DRA_HUMAN	204-254	51	4	A:179-181 D:179-181 G:179-181 J:179-181	3 3 3 3
3.10b	ENST00000383259	10b	ENSE00001925700	HSCHR6_MHC_QBL:32369906-32370300	395	DRA_HUMAN	-	0	0	-	-

Reformat:	Number of residues per line =  ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete  aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:178
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:178
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198        
            DRA_HUMAN    29 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 206
               SCOP domains ---------d1zgla2 A:13-81 Class II MHC alpha chain, N-terminal domain          -d1zgla1 A:83-179 Class II MHC alpha chain, C-terminal domain                                     -- SCOP domains
               CATH domains 1zglA01 A:4-81                                                                1zglA02 A:82-181 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee...eeeeeeee..eeeeeee....eeee...hhhhh.ee...hhhhhhhhhhhhhhhhhhhh..........eeeeee.........eeeeeeeeee.....eeeee....ee....ee..........eeeeeeeee.......eeeeee.......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
           Transcript 3 (1) Exon 3.7b  PDB: A:4-85 UniProt: 28-110 [INCOMPLETE]                               ---------------------------------------------------------------------------------------------3.9 Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------Exon 3.8c  PDB: A:85-179 UniProt: 110-204                                                      -- Transcript 3 (2)
                 1zgl A   4 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 181
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173        

Chain B from PDB  Type:PROTEIN  Length:175
 aligned with DRB5_HUMAN | Q30154 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:189
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209         
           DRB5_HUMAN    30 GDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR 218
               SCOP domains d1zglb2 B:1-92 Class II MHC beta chain, N-terminal domain                                   d1zglb1 B:9 3-      189 Class II MHC bet a       chain, C-terminal domain                         SCOP domains
               CATH domains 1zglB01 B:1-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1         1zglB02 B:9 3-      189 Immunoglobulins                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeeee....eeeeeeeeee..eeeeeee.hhh.eee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...........eee.-..------...eeeee.......eee..-..------......ee.....eeeeee...........eeeee.......eeee.. Sec.struct. author
             SAPs(SNPs) (1) ---Q-C-----T---------------Q-G--H---NV-------------------E-S------I--EA--E--NV------AV--------------------------------------A---------G---------------------I-------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------H------Y-----------------------------L--GG--L------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------HT---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) ---------------------------------------------------------------------N----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
             SAPs(SNPs) (5) ---------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5)
             SAPs(SNPs) (6) ---------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (6)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
           Transcript 2 (1) 2.1  -----------------------------------------------------------------------------------------Exon 2.3  PDB: B:95-189 (gaps) UniProt: 124-218                                                 Transcript 2 (1)
           Transcript 2 (2) ----Exon 2.2  PDB: B:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------2 Transcript 2 (2)
                 1zgl B   1 GDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYP-RT------NLLVCSVNGFYPGSIEVRWF-NS------VVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR 189
                                    10        20        30        40        50        60        70        80        90       100  | ||   -  |    120       130 | ||    - |     150       160       170       180         
                                                                                                                                103 ||    113                132 ||    142                                               
                                                                                                                                  105|                         134|                                                      
                                                                                                                                   106                          135                                                      

Chain C from PDB  Type:PROTEIN  Length:14
 aligned with MBP_HUMAN | P02686 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:18
                                   230        
            MBP_HUMAN   221 VHFFKNIVTPRTPPPSQG 238
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ..ee.........----. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
               Transcript 1 1.13c  Exon 1.14e  Transcript 1
                 1zgl C   1 VHFFKNIVTPRTP----G  14
                                    10  |    |
                                       13   14

Chain D from PDB  Type:PROTEIN  Length:178
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:178
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198        
            DRA_HUMAN    29 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 206
               SCOP domains ---------d1zgld2 D:13-81 Class II MHC alpha chain, N-terminal domain          -d1zgld1 D:83-179 Class II MHC alpha chain, C-terminal domain                                     -- SCOP domains
               CATH domains 1zglD01 D:4-81                                                                1zglD02 D:82-181 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee...eeeeeeee..eeeeeee....eeee.hhhhhhh......hhhhhhhhhhhhhhhhhhhhh.........eeeeee.........eeeeeeeeee.....eeeeee..ee.....eeeeeee.....eeeeeeeee.......eeeeee.......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
           Transcript 3 (1) Exon 3.7b  PDB: D:4-85 UniProt: 28-110 [INCOMPLETE]                               ---------------------------------------------------------------------------------------------3.9 Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------Exon 3.8c  PDB: D:85-179 UniProt: 110-204                                                      -- Transcript 3 (2)
                 1zgl D   4 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 181
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173        

Chain E from PDB  Type:PROTEIN  Length:175
 aligned with DRB5_HUMAN | Q30154 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:188
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210        
           DRB5_HUMAN    31 DTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR 218
               SCOP domains d1zgle2 E:2-92 Class II MHC beta chain, N-terminal domain                                  d1zgle1 E:9 3-      189 Class II MHC beta cha    in, C-terminal domain                            SCOP domains
               CATH domains 1zglE01 E:2-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1        1zglE02 E:9 3-      189 Immunoglobulins                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee....eeeeeeeeee..eeeeeee.hhh.ee.....hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...........eee.-..------..eeeeeeee......ee.......----......ee.....eeeeeee.--......ee.ee...........ee. Sec.struct. author
             SAPs(SNPs) (1) --Q-C-----T---------------Q-G--H---NV-------------------E-S------I--EA--E--NV------AV--------------------------------------A---------G---------------------I-------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------------------------H------Y-----------------------------L--GG--L------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) --------------------------------------------------------------------HT---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) --------------------------------------------------------------------N----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
             SAPs(SNPs) (5) --------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5)
             SAPs(SNPs) (6) --------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (6)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
           Transcript 2 (1) 2.1 -----------------------------------------------------------------------------------------Exon 2.3  PDB: E:95-189 (gaps) UniProt: 124-218                                                 Transcript 2 (1)
           Transcript 2 (2) ---Exon 2.2  PDB: E:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------2 Transcript 2 (2)
                 1zgl E   2 DTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYP-RT------NLLVCSVNGFYPGSIEVRWFRNSQE----VVSTGLIQNGDWTFQTLVMLE--PRSGEVYTCQVEHPSVTSPLTVEWR 189
                                    11        21        31        41        51        61        71        81        91       101 | ||    - |     121       131     |   -|      151       161|  |   171       181        
                                                                                                                               103 ||    113                     137  142                 162  |                        
                                                                                                                                 105|                                                        165                        
                                                                                                                                  106                                                                                   

Chain F from PDB  Type:PROTEIN  Length:15
 aligned with MBP_HUMAN | P02686 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:43
                                   230       240       250       260   
            MBP_HUMAN   221 VHFFKNIVTPRTPPPSQGKGRGLSLSRFSWGAEGQRPGFGYGG 263
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .............----------------------------.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
               Transcript 1 1.13c  Exon 1.14e  Exon 1.14g Exon 1.14o    Transcript 1
                 1zgl F   1 VHFFKNIVTPRTP----------------------------GG  15
                                    10  |      -         -         - | 
                                       13                           14 

Chain G from PDB  Type:PROTEIN  Length:178
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:178
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198        
            DRA_HUMAN    29 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 206
               SCOP domains ---------d1zglg2 G:13-81 Class II MHC alpha chain, N-terminal domain          -d1zglg1 G:83-179 Class II MHC alpha chain, C-terminal domain                                     -- SCOP domains
               CATH domains 1zglG01 G:4-81                                                                1zglG02 G:82-181 Immunoglobulins                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee...eeeeeeee..eeeeee......eee.hhhhhhh......hhhhhhhhhhhhhhhhhhhh..........eeeeee.........eeeeeeeeee.....eeeeee..eee....ee...ee.....eeeeeeeee.......eeeeee..........ee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
           Transcript 3 (1) Exon 3.7b  PDB: G:4-85 UniProt: 28-110 [INCOMPLETE]                               ---------------------------------------------------------------------------------------------3.9 Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------Exon 3.8c  PDB: G:85-179 UniProt: 110-204                                                      -- Transcript 3 (2)
                 1zgl G   4 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 181
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173        

Chain H from PDB  Type:PROTEIN  Length:168
 aligned with DRB5_HUMAN | Q30154 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:189
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209         
           DRB5_HUMAN    30 GDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR 218
               SCOP domains d1zglh2 H:1-92 Class II MHC beta chain, N-terminal domain                                   d1zglh1 H:93        -189 Class II MHC be         ta chain, C-terminal     domain                  SCOP domains
               CATH domains 1zglH01 H:1-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1         1zglH02 H:93        -189 Immunoglobulins                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeeee....eeeeeeeeee..eeeeeee.hhh.ee..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..........eeeee.--------..eeeeeeee.....eeeee---------......ee.....eeeeeee.----.....eeeee............. Sec.struct. author
             SAPs(SNPs) (1) ---Q-C-----T---------------Q-G--H---NV-------------------E-S------I--EA--E--NV------AV--------------------------------------A-------------------------------I-------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------H------Y-----------------------------L--GG--L------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------HT---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) ---------------------------------------------------------------------N----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
             SAPs(SNPs) (5) ---------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5)
             SAPs(SNPs) (6) ---------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (6)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
           Transcript 2 (1) 2.1  -----------------------------------------------------------------------------------------Exon 2.3  PDB: H:95-189 (gaps) UniProt: 124-218                                                 Transcript 2 (1)
           Transcript 2 (2) ----Exon 2.2  PDB: H:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------2 Transcript 2 (2)
                 1zgl H   1 GDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPA--------NLLVCSVNGFYPGSIEVRWF---------VVSTGLIQNGDWTFQTLVMLE----SGEVYTCQVEHPSVTSPLTVEWR 189
                                    10        20        30        40        50        60        70        80        90       100   |     -  |    120       130 |       - |     150       160 |    |170       180         
                                                                                                                                 104      113                132       142                 162  167                      

Chain I from PDB  Type:PROTEIN  Length:13
 aligned with MBP_HUMAN | P02686 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:17
                                   231       
            MBP_HUMAN   222 HFFKNIVTPRTPPPSQG 238
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ............----. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
               Transcript 1 1.13c Exon 1.14e  Transcript 1
                 1zgl I   2 HFFKNIVTPRTP----G  14
                                    11 |    |
                                      13   14

Chain J from PDB  Type:PROTEIN  Length:178
 aligned with DRA_HUMAN | P01903 from UniProtKB/Swiss-Prot  Length:254

    Alignment length:178
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198        
            DRA_HUMAN    29 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 206
               SCOP domains ---------d1zglj2 J:13-81 Class II MHC alpha chain, N-terminal domain          -d1zglj1 J:83-179 Class II MHC alpha chain, C-terminal domain                                     -- SCOP domains
               CATH domains 1zglJ01 J:4-81                                                                1zglJ02 J:82-181 Immunoglobulins                                                                     CATH domains
           Pfam domains (1) MHC_II_alpha-1zglJ05 J:4-84                                                      --------C1-set-1zglJ01 J:93-175                                                            ------ Pfam domains (1)
           Pfam domains (2) MHC_II_alpha-1zglJ06 J:4-84                                                      --------C1-set-1zglJ02 J:93-175                                                            ------ Pfam domains (2)
           Pfam domains (3) MHC_II_alpha-1zglJ07 J:4-84                                                      --------C1-set-1zglJ03 J:93-175                                                            ------ Pfam domains (3)
           Pfam domains (4) MHC_II_alpha-1zglJ08 J:4-84                                                      --------C1-set-1zglJ04 J:93-175                                                            ------ Pfam domains (4)
         Sec.struct. author .eeeeeeeeeee....eeeeeee..eeeeeee....eeee.hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.........eeeeee.........eeeeeeeeee.....eeeeee...ee....ee...ee.....eeeeeeeee.......eeeeee.......eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC -------------- PROSITE
           Transcript 3 (1) Exon 3.7b  PDB: J:4-85 UniProt: 28-110 [INCOMPLETE]                               ---------------------------------------------------------------------------------------------3.9 Transcript 3 (1)
           Transcript 3 (2) ---------------------------------------------------------------------------------Exon 3.8c  PDB: J:85-179 UniProt: 110-204                                                      -- Transcript 3 (2)
                 1zgl J   4 EHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFD 181
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173        

Chain K from PDB  Type:PROTEIN  Length:180
 aligned with DRB5_HUMAN | Q30154 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:189
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209         
           DRB5_HUMAN    30 GDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR 218
               SCOP domains d1zglk2 K:1-92 Class II MHC beta chain, N-terminal domain                                   d1zglk1 K:9         3-189 Class II MHC beta chain, C-terminal domain                              SCOP domains
               CATH domains 1zglK01 K:1-92 Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1         1zglK02 K:9         3-189 Immunoglobulins                                                         CATH domains
           Pfam domains (1) ------------MHC_II_beta-1zglK05 K:13-87                                                ---------------C         1-set-1zglK01 K:103-189                                                       Pfam domains (1)
           Pfam domains (2) ------------MHC_II_beta-1zglK06 K:13-87                                                ---------------C         1-set-1zglK02 K:103-189                                                       Pfam domains (2)
           Pfam domains (3) ------------MHC_II_beta-1zglK07 K:13-87                                                ---------------C         1-set-1zglK03 K:103-189                                                       Pfam domains (3)
           Pfam domains (4) ------------MHC_II_beta-1zglK08 K:13-87                                                ---------------C         1-set-1zglK04 K:103-189                                                       Pfam domains (4)
         Sec.struct. author ......eeeeeeeeeeee....eeeeeeeeee..eeeeeee.....eee.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh............ee.---------.eeeeeeeee.....eeeeee..............ee.....eeeeeeee........eeeeee.......eeeee. Sec.struct. author
             SAPs(SNPs) (1) ---Q-C-----T---------------Q-G--H---NV-------------------E-S------I--EA--E--NV------AV--------------------------------------A---------G---------------------I-------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------H------Y-----------------------------L--GG--L------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------HT---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) ---------------------------------------------------------------------N----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
             SAPs(SNPs) (5) ---------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5)
             SAPs(SNPs) (6) ---------------------------------------------------------------------R----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (6)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------IG_MHC ------------ PROSITE
           Transcript 2 (1) 2.1  -----------------------------------------------------------------------------------------Exon 2.3  PDB: K:95-189 (gaps) UniProt: 124-218                                                 Transcript 2 (1)
           Transcript 2 (2) ----Exon 2.2  PDB: K:5-95 UniProt: 34-124                                                      ---------------------------------------------------------------------------------------------2 Transcript 2 (2)
                 1zgl K   1 GDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYP---------NLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWR 189
                                    10        20        30        40        50        60        70        80        90       100  |      -  |    120       130       140       150       160       170       180         
                                                                                                                                103       113                                                                            

Chain L from PDB  Type:PROTEIN  Length:14
 aligned with MBP_HUMAN | P02686 from UniProtKB/Swiss-Prot  Length:304

    Alignment length:18
                                   230        
            MBP_HUMAN   221 VHFFKNIVTPRTPPPSQG 238
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
           Pfam domains (1) Myelin_MBP-1z----- Pfam domains (1)
           Pfam domains (2) Myelin_MBP-1z----- Pfam domains (2)
           Pfam domains (3) Myelin_MBP-1z----- Pfam domains (3)
         Sec.struct. author .............----. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
               Transcript 1 1.13c  Exon 1.14e  Transcript 1
                 1zgl L   1 VHFFKNIVTPRTP----G  14
                                    10  |    |
                                       13   14

Chain M from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zglM01 M:1-115 Immunoglobulins                                                                                ------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.............ee.eee......eeeeeee......eeee..........................ee....hhhhh.eeeeeee........ee...ee.............eeeee..............ee..hhhhh...eeeeee..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgl M   1 DSVTQMEGPVTLSEEAFLTINCTYTATGYPSLFWYVQYPGEGLQLLLKATKADDKGSNKGFEATYRKETTSFHLEKGSVQVSDSAVYFCALSGGDSSYKLIFGSGTRLLVRPDNPDPVYSVCLFTDFDSQTNDVYITDKTVLDMRSMDFKSNSAVAWSNSDFACANAFNNSIIPEDTF 203
                                    10        20        30        40        50        61        71        81        91  ||   104       114  ||  |137       147 ||    164       174       185       195        
                                                                                     59|                               94|                117|  ||||         149|                       183|                  
                                                                                      61                                98                 120  ||||          157                        185                  
                                                                                                                                              123|||                                                          
                                                                                                                                               125||                                                          
                                                                                                                                                126|                                                          
                                                                                                                                                 137                                                          

Chain P from PDB  Type:PROTEIN  Length:242
 aligned with TRBC1_HUMAN | P01850 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:243
                                                                                                                                                1                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -      |  4        14        24        34        44        54        64        74        84        94       104       114       124   
          TRBC1_HUMAN     - --------------------------------------------------------------------------------------------------------------------EDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWG 127
               SCOP domains ----d1zglp1 P:3-118 T-cell antigen receptor                                                                          d1zglp2 P:119-244 T-cell  antigen receptor                                                                                     SCOP domains
               CATH domains 1zglP01 P:-1-118 Immunoglobulins                                                                                     1zglP02 P:119-244 Immuno globulins                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee...........eeeeee......eeeeeee......eeeeee..............eeeee.....eeeee.........eeeeeee.........ee...ee.....................hhhhhhhh-.eeeeeeeee....ee..eee..ee....eee....ee.........eeeeeeee.hhhhhh.....eeeeeee...................eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgl P  -1 GGGGGVTQTPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLTVVEDLKNVFPPEVAVFEPSEAEISHTQ-ATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWG 244
                                     8        18        28        38        48        58   ||   69        79        89        99   ||  111       121       131       141| |    151       161       171       181       191       201       211       221       231       241   
                                                                                          62|                                    103|                                 142 |                                                                                                    
                                                                                           64                                     106                                   144                                                                                                    

Chain Q from PDB  Type:PROTEIN  Length:187
 aligned with TCA_HUMAN | P01848 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:190
                                                                                                                            19                                                                                            
                                                                                                         1              17 18|                      20                                                                    
                                     -         -         -         -         -         -         -       | 3        13   |  || -         -         - |      28        38        48        58        68        78        88
            TCA_HUMAN     - -----------------------------------------------------------------------------PNIQNPDPAVYQLRDSK--SS-----------------------DKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTF  88
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zglQ01 Q:0-115 Immunoglobulins                                                                                 ----------------------------   ----------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee......ee.....ee.eee......eeeeeee......eeeeee........................ee..........eeeeeee........ee...ee..ee............eeeee...........---........eee......eeeeeeee......hhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgl Q   0 GDSVTQMEGPVTLSEEAFLTINCTYTATGYPSLFWYVQYPGEGLQLLLKATKADDKGSNKGFEATYRKETTSFHLEKGSVQVSDSAVYFCALSGGDSSYKLIFGSGTRLLVRPNPDPVYLRDSSVCLFTDFDSQTNVSQS---DVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTF 203
                                     9        19        29        39        49        59|       70        80        90   ||  103       113  ||  |128  ||   143       153   |   163       173       183       193       203
                                                                                      59|                               94|               116|  ||||  ||             153 157                                              
                                                                                       61                                98                120  ||||  ||                                                                  
                                                                                                                                              123|||  ||                                                                  
                                                                                                                                               125||  ||                                                                  
                                                                                                                                                126|  ||                                                                  
                                                                                                                                                 128  ||                                                                  
                                                                                                                                                    131|                                                                  
                                                                                                                                                     137                                                                  

Chain R from PDB  Type:PROTEIN  Length:238
 aligned with TRBC1_HUMAN | P01850 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:238
                                                                                                                                               1                                                                                                                          
                                     -         -         -         -         -         -         -         -         -         -         -     |   5        15        25        35        45        55        65        75        85        95       105       115        
          TRBC1_HUMAN     - -------------------------------------------------------------------------------------------------------------------EDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSA 123
               SCOP domains ---d1zglr1 R:3-118 T-cell antigen receptor                                                                          d1zglr2 R:119-240 T-cell antigen receptor                                                                                  SCOP domains
               CATH domains 1zglR01 R:0-118 Immunoglobulins                                                                                     1zglR02 R:119-240 Immunoglobulins                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee...........eeeeee......eeeeee.......eeeeeee.............eeeee.....eeeee.........eeeeeee.........ee...ee.....hhhhh....eeee...hhhhhhhheeeeeeeeeee......eeeee..ee....eee...............eee.eeeeeehhhhh.....eeeee......................eee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgl R   0 GGGGVTQTPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLTVVEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSA 240
                                     9        19        29        39        49        59  ||    70        80        90       100  ||   112       122       132       142       152       162       172       182       192       202       212       222       232        
                                                                                         62|                                    103|                                                                                                                                      
                                                                                          64                                     106                                                                                                                                      

Chain S from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zglS01 S:1-115 Immunoglobulins                                                                                ----------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee......ee.....ee.eeee.....eeeeeee....................................ee....hhhhh.eeeeeee........ee...ee..ee................................................................. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgl S   1 DSVTQMEGPVTLSEEAFLTINCTYTATGYPSLFWYVQYPGEGLQLLLKATKADDKGSNKGFEATYRKETTSFHLEKGSVQVSDSAVYFCALSGGDSSYKLIFGSGTRLLVRPQNPDPVYLRDSLFTFDSQTNSKDDVYITDKTVLDMRSMDFKSNSAVANKSDFANAFNNSPEDTF 203
                                    10        20        30        40        50        61        71        81        91  ||   104       114 ||   |128  || ||147 || || 161       171       183   ||  195||    
                                                                                     59|                               94|               116| 123|||  || ||  149| ||                    180| 187|   196|    
                                                                                      61                                98                119  125||  || ||   153 ||                     183  190    199    
                                                                                                                                                126|  || ||     155|                                        
                                                                                                                                                 128  || ||      157                                        
                                                                                                                                                    131| ||                                                 
                                                                                                                                                     140 ||                                                 
                                                                                                                                                       142|                                                 
                                                                                                                                                        144                                                 

Chain T from PDB  Type:PROTEIN  Length:226
 aligned with TRBC1_HUMAN | P01850 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:246
                                                                                                                                                1                                                                                                                                 
                                     -         -         -         -         -         -         -         -         -         -         -      |  4        14        24        34        44        54        64        74        84        94       104       114       124      
          TRBC1_HUMAN     - --------------------------------------------------------------------------------------------------------------------EDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD 130
               SCOP domains ----d1zglt1 T:3-118 T-cell antigen receptor                                                                          d1zglt2 T: 11     9-244  T-cell antigen recepto   r                                                                            -- SCOP domains
               CATH domains 1zglT01 T:-1-118 Immunoglobulins                                                                                     1zglT02 T: 11     9-247  Immunoglobulins                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee.....ee...eeeeeee......eeeeeee......eeeeeee.............eeeee.....eeeeee..hhhhh.eeeeeee..............ee..ee.hhhhh.....-..-----......-....ee........ee..eee.---.....ee..................eee----..-.....-.eee..ee......................---..-.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1zgl T  -1 GGGGGVTQTPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLTVVEDLKNVFPPEV-VF-----EISHTQ-ATLVCLATGFYPDHVELSWWVN---VHSGVSTDPQPLKEQPALNDSRYSLSSR----AT-WQNPR-HFRCQVQFYGLSENDEWTQDRAKPVTQIVS---WG-AD 247
                                     8        18        28        38        48        58   ||   69        79        89        99   ||  111       121      |131     | 141| |    151       161   |   171       181       191    |  201| |   |211       221       231       | - || | 
                                                                                          62|                                    103|                   128 ||   137  142 |                  165 169                        196  201| | 208 |                          239 243| | 
                                                                                           64                                     106                     130|          144                                                       202 |   210                               244 | 
                                                                                                                                                           131                                                                      204                                       246 

Chain U from PDB  Type:PROTEIN  Length:195
 aligned with TCA_HUMAN | P01848 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:202
                                                                                                                                            1                                                                                         
                                     -         -         -         -         -         -         -         -         -         -         -  |      8        18        28        38        48        58        68        78        88  
            TCA_HUMAN     - ----------------------------------------------------------------------------------------------------------------PNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFP  90
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 1zglU01 U:0-115 Immunoglobulins                                                                                 -------- --------   ------------------   ------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------------------------------------------------D UF1968-1   zglU01 U:123-205                                                       Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------------------------------------------------------------------D UF1968-1   zglU02 U:123-205                                                       Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------------------------------------------------------------------D UF1968-1   zglU03 U:123-205                                                       Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------------------------------------------------------------------D UF1968-1   zglU04 U:123-205                                                       Pfam domains (4)
         Sec.struct. author ...eee.............ee.eee......eeeeee.......eeeeee...........ee..ee....ee.eee...hhhhh.eeeeeee........ee...ee............-........---...eeee...........---.......eee.hhhhh..eeeeee......................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgl U   0 GDSVTQMEGPVTLSEEAFLTINCTYTATGYPSLFWYVQYPGEGLQLLLKATKADDKGSNKGFEATYRKETTSFHLEKGSVQVSDSAVYFCALSGGDSSYKLIFGSGTRLLVRPDIQNPDP-VYQLRDSK---KSVCLFTDFDSQTNVSQS---DVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFP 205
                                     9        19        29        39        49        59|       70        80        90   ||  103       113       123 |      |-  |    143       153   |   163       173       183       193       203  
                                                                                      59|                               94|                      123 |    132 136              153 157                                                
                                                                                       61                                98                        125                                                                                

Chain V from PDB  Type:PROTEIN  Length:242
 aligned with TRBC1_HUMAN | P01850 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:242
                                                                                                                                               1                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -     |   5        15        25        35        45        55        65        75        85        95       105       115       125  
          TRBC1_HUMAN     - -------------------------------------------------------------------------------------------------------------------EDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWG 127
               SCOP domains ---d1zglv1 V:3-118 T-cell antigen receptor                                                                          d1zglv2 V:119-244 T-cell antigen receptor                                                                                      SCOP domains
               CATH domains 1zglV01 V:0-118 Immunoglobulins                                                                                     1zglV02 V:119-244 Immunoglobulins                                                                                              CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------C1-set-1zglV01 V:132-225                                                                      ------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------C1-set-1zglV02 V:132-225                                                                      ------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------C1-set-1zglV03 V:132-225                                                                      ------------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------------C1-set-1zglV04 V:132-225                                                                      ------------------- Pfam domains (4)
         Sec.struct. author .....eee...........eeeeee......eeeeeee......eeeeeee.............eeeee.....eeeee.........eeeeeee.........ee...ee.....hhhhh...eeeee...hhhhhhh.eeeeeeeeeee....eeeeeee...ee...eee....ee.........eeeeeeeeeehhhhhh....eeeeeee....................eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1zgl V   0 GGGGVTQTPRYLIKTRGQQVTLSCSPISGHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCASSLADRVNTEAFFGQGTRLTVVEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWG 244
                                     9        19        29        39        49        59  ||    70        80        90       100  ||   112       122       132       142       152       162       172       182       192       202       212       222       232       242  
                                                                                         62|                                    103|                                                                                                                                          
                                                                                          64                                     106                                                                                                                                          

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'