1T05 | PD0537 - JenaLib

Asymmetric/Biological Unit (92, 92)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_POL_HV1H2_069 *	M	628	L	POL_HV1H2	---	---	B	M	41	L
02	UniProt	VAR_POL_HV1H2_070 *	E	631	A	POL_HV1H2	---	---	B	E	44	A
03	UniProt	VAR_POL_HV1H2_071 *	E	631	D	POL_HV1H2	---	---	B	E	44	D
04	UniProt	VAR_POL_HV1H2_072 *	P	639	R	POL_HV1H2	---	---	B	P	52	R
05	UniProt	VAR_POL_HV1H2_073 *	N	641	D	POL_HV1H2	---	---	B	N	54	D
06	UniProt	VAR_POL_HV1H2_074 *	A	649	V	POL_HV1H2	---	---	B	A	62	V
07	UniProt	VAR_POL_HV1H2_075 *	K	652	R	POL_HV1H2	---	---	B	K	65	R
08	UniProt	VAR_POL_HV1H2_076 *	D	654	A	POL_HV1H2	---	---	B	D	67	A
09	UniProt	VAR_POL_HV1H2_077 *	D	654	E	POL_HV1H2	---	---	B	D	67	E
10	UniProt	VAR_POL_HV1H2_078 *	D	654	G	POL_HV1H2	---	---	B	D	67	G
11	UniProt	VAR_POL_HV1H2_079 *	D	654	N	POL_HV1H2	---	---	B	D	67	N
12	UniProt	VAR_POL_HV1H2_080 *	D	654	S	POL_HV1H2	---	---	B	D	67	S
13	UniProt	VAR_POL_HV1H2_081 *	S	655	G	POL_HV1H2	---	---	B	S	68	G
14	UniProt	VAR_POL_HV1H2_082 *	S	655	N	POL_HV1H2	---	---	B	S	68	N
15	UniProt	VAR_POL_HV1H2_083 *	S	655	Y	POL_HV1H2	---	---	B	S	68	Y
16	UniProt	VAR_POL_HV1H2_084 *	T	656	A	POL_HV1H2	---	---	B	T	69	A
17	UniProt	VAR_POL_HV1H2_085 *	T	656	D	POL_HV1H2	---	---	B	T	69	D
18	UniProt	VAR_POL_HV1H2_086 *	T	656	G	POL_HV1H2	---	---	B	T	69	G
19	UniProt	VAR_POL_HV1H2_087 *	T	656	N	POL_HV1H2	---	---	B	T	69	N
20	UniProt	VAR_POL_HV1H2_088 *	K	657	E	POL_HV1H2	---	---	B	K	70	E
21	UniProt	VAR_POL_HV1H2_089 *	K	657	R	POL_HV1H2	---	---	B	K	70	R
22	UniProt	VAR_POL_HV1H2_090 *	K	657	S	POL_HV1H2	---	---	B	K	70	S
23	UniProt	VAR_POL_HV1H2_091 *	L	661	I	POL_HV1H2	---	---	B	L	74	I
24	UniProt	VAR_POL_HV1H2_092 *	L	661	V	POL_HV1H2	---	---	B	L	74	V
25	UniProt	VAR_POL_HV1H2_093 *	V	662	I	POL_HV1H2	---	---	B	V	75	I
26	UniProt	VAR_POL_HV1H2_094 *	V	662	L	POL_HV1H2	---	---	B	V	75	L
27	UniProt	VAR_POL_HV1H2_095 *	V	662	M	POL_HV1H2	---	---	B	V	75	M
28	UniProt	VAR_POL_HV1H2_096 *	V	662	T	POL_HV1H2	---	---	B	V	75	T
29	UniProt	VAR_POL_HV1H2_097 *	F	664	L	POL_HV1H2	---	---	B	F	77	L
30	UniProt	VAR_POL_HV1H2_098 *	W	675	G	POL_HV1H2	---	---	B	W	88	G
31	UniProt	VAR_POL_HV1H2_099 *	W	675	S	POL_HV1H2	---	---	B	W	88	S
32	UniProt	VAR_POL_HV1H2_100 *	E	676	G	POL_HV1H2	---	---	B	E	89	G
33	UniProt	VAR_POL_HV1H2_101 *	E	676	K	POL_HV1H2	---	---	B	E	89	K
34	UniProt	VAR_POL_HV1H2_102 *	L	679	I	POL_HV1H2	---	---	B	L	92	I
35	UniProt	VAR_POL_HV1H2_103 *	L	687	I	POL_HV1H2	---	---	B	L	100	I
36	UniProt	VAR_POL_HV1H2_104 *	K	688	E	POL_HV1H2	---	---	B	K	101	E
37	UniProt	VAR_POL_HV1H2_105 *	K	688	P	POL_HV1H2	---	---	B	K	101	P
38	UniProt	VAR_POL_HV1H2_106 *	K	688	Q	POL_HV1H2	---	---	B	K	101	Q
39	UniProt	VAR_POL_HV1H2_107 *	K	690	E	POL_HV1H2	---	---	B	K	103	E
40	UniProt	VAR_POL_HV1H2_108 *	K	690	N	POL_HV1H2	---	---	B	K	103	N
41	UniProt	VAR_POL_HV1H2_109 *	K	690	R	POL_HV1H2	---	---	B	K	103	R
42	UniProt	VAR_POL_HV1H2_110 *	V	693	A	POL_HV1H2	---	---	B	V	106	A
43	UniProt	VAR_POL_HV1H2_111 *	V	693	I	POL_HV1H2	---	---	B	V	106	I
44	UniProt	VAR_POL_HV1H2_112 *	V	693	M	POL_HV1H2	---	---	B	V	106	M
45	UniProt	VAR_POL_HV1H2_113 *	V	695	I	POL_HV1H2	---	---	B	V	108	I
46	UniProt	VAR_POL_HV1H2_114 *	Y	702	F	POL_HV1H2	---	---	B	Y	115	F
47	UniProt	VAR_POL_HV1H2_115 *	F	703	Y	POL_HV1H2	---	---	B	F	116	Y
48	UniProt	VAR_POL_HV1H2_116 *	V	705	I	POL_HV1H2	---	---	B	V	118	I
49	UniProt	VAR_POL_HV1H2_117 *	P	706	S	POL_HV1H2	---	---	B	P	119	S
50	UniProt	VAR_POL_HV1H2_118 *	I	722	L	POL_HV1H2	---	---	B	I	135	L
51	UniProt	VAR_POL_HV1H2_119 *	I	722	M	POL_HV1H2	---	---	B	I	135	M
52	UniProt	VAR_POL_HV1H2_120 *	I	722	T	POL_HV1H2	---	---	B	I	135	T
53	UniProt	VAR_POL_HV1H2_121 *	E	725	K	POL_HV1H2	---	---	B	E	138	K
54	UniProt	VAR_POL_HV1H2_122 *	Q	732	M	POL_HV1H2	---	---	B	Q	145	M
55	UniProt	VAR_POL_HV1H2_123 *	Q	738	M	POL_HV1H2	---	---	B	Q	151	M
56	UniProt	VAR_POL_HV1H2_124 *	S	743	A	POL_HV1H2	---	---	B	S	156	A
57	UniProt	VAR_POL_HV1H2_125 *	P	744	S	POL_HV1H2	---	---	B	P	157	S
58	UniProt	VAR_POL_HV1H2_126 *	Q	748	L	POL_HV1H2	---	---	B	Q	161	L
59	UniProt	VAR_POL_HV1B1_003 *	K	771	R	POL_HV1B1	---	---	A	K	172	R
60	UniProt	VAR_POL_HV1H2_127 *	V	766	D	POL_HV1H2	---	---	B	V	179	D
61	UniProt	VAR_POL_HV1H2_128 *	Y	768	C	POL_HV1H2	---	---	B	Y	181	C
62	UniProt	VAR_POL_HV1H2_129 *	M	771	I	POL_HV1H2	---	---	B	M	184	I
63	UniProt	VAR_POL_HV1H2_130 *	M	771	T	POL_HV1H2	---	---	B	M	184	T
64	UniProt	VAR_POL_HV1H2_131 *	M	771	V	POL_HV1H2	---	---	B	M	184	V
65	UniProt	VAR_POL_HV1H2_132 *	Y	775	C	POL_HV1H2	---	---	B	Y	188	C
66	UniProt	VAR_POL_HV1H2_133 *	Y	775	H	POL_HV1H2	---	---	B	Y	188	H
67	UniProt	VAR_POL_HV1H2_134 *	Y	775	L	POL_HV1H2	---	---	B	Y	188	L
68	UniProt	VAR_POL_HV1H2_135 *	V	776	I	POL_HV1H2	---	---	B	V	189	I
69	UniProt	VAR_POL_HV1H2_136 *	G	777	A	POL_HV1H2	---	---	B	G	190	A
70	UniProt	VAR_POL_HV1H2_137 *	G	777	C	POL_HV1H2	---	---	B	G	190	C
71	UniProt	VAR_POL_HV1H2_138 *	G	777	E	POL_HV1H2	---	---	B	G	190	E
72	UniProt	VAR_POL_HV1H2_139 *	G	777	Q	POL_HV1H2	---	---	B	G	190	Q
73	UniProt	VAR_POL_HV1H2_140 *	G	777	S	POL_HV1H2	---	---	B	G	190	S
74	UniProt	VAR_POL_HV1H2_141 *	G	777	T	POL_HV1H2	---	---	B	G	190	T
75	UniProt	VAR_POL_HV1H2_142 *	G	777	V	POL_HV1H2	---	---	B	G	190	V
76	UniProt	VAR_POL_HV1H2_143 *	H	795	Y	POL_HV1H2	---	---	B	H	208	Y
77	UniProt	VAR_POL_HV1H2_144 *	L	797	W	POL_HV1H2	---	---	B	L	210	W
78	UniProt	VAR_POL_HV1H2_145 *	R	798	K	POL_HV1H2	---	---	B	R	211	K
79	UniProt	VAR_POL_HV1H2_146 *	L	801	F	POL_HV1H2	---	---	B	L	214	F
80	UniProt	VAR_POL_HV1H2_147 *	T	802	F	POL_HV1H2	---	---	B	T	215	F
81	UniProt	VAR_POL_HV1H2_148 *	T	802	Y	POL_HV1H2	---	---	B	T	215	Y
82	UniProt	VAR_POL_HV1H2_153 *	P	823	L	POL_HV1H2	---	---	B	P	236	L
83	UniProt	VAR_POL_HV1H2_154 *	K	825	T	POL_HV1H2	---	---	B	K	238	T
84	UniProt	VAR_POL_HV1H2_155 *	L	870	I	POL_HV1H2	---	---	B	L	283	I
85	UniProt	VAR_POL_HV1H2_156 *	Y	905	F	POL_HV1H2	---	---	B	Y	318	F
86	UniProt	VAR_POL_HV1H2_157 *	G	920	D	POL_HV1H2	---	---	B	G	333	D
87	UniProt	VAR_POL_HV1H2_158 *	G	920	E	POL_HV1H2	---	---	B	G	333	E
88	UniProt	VAR_POL_HV1H2_159 *	T	973	I	POL_HV1H2	---	---	B	T	386	I
89	UniProt	VAR_POL_HV1B1_004 *	K	1050	R	POL_HV1B1	---	---	A	K	451	R
90	UniProt	VAR_POL_HV1B1_005 *	V	1057	L	POL_HV1B1	---	---	A	V	458	L
91	UniProt	VAR_POL_HV1B1_006 *	K	1111	Q	POL_HV1B1	---	---	A	K	512	Q
92	UniProt	VAR_POL_HV1B1_007 *	E	1128	Q	POL_HV1B1	---	---	A	E	529	Q
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

PROSITE Motifs (2, 3)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:554
 aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot  Length:1447

    Alignment length:554
                                   609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139      1149    
           POL_HV1B1    600 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 1153
               SCOP domains d1t05a2 A:1-429 HIV-1 reverse transcriptase                                                                                                                                                                                                                                                                                                                                                                                                  d1t05a1 A:430-554 HIV RNase H (Domain of reverse transcriptase)                                                               SCOP domains
               CATH domains 1t05A01 A:1-90,A:116-156 HIV Type 1 Reverse Transcriptase, subunit A, domain 1            1t05A02                  1t05A01 A:1-90,A:116-156                 1t05A02 A:91-115,A:157-225  [code=3.30.70.270, no name defined]      1t05A03 A:226-319  [code=3.30.70.270, no name defined]                                        1t05A04 A:320-426  [code=3.30.70.270, no name defined]                                                     1t05A05 A:427-554  [code=3.30.420.10, no name defined]                                                                           CATH domains
               Pfam domains --------------------------------------------------------------RVT_1-1t05A02 A:63-234                                                                                                                                                      ---RVT_thumb-1t05A04 A:238-307                                           ---------RVT_connect-1t05A03 A:317-419                                                                          ---------------RNase_H-1t05A01 A:435-554                                                                                                Pfam domains
         Sec.struct. author ..........................hhhhhhhhhhhhhhhhhhh.eee..........eeeee......eeeee.hhhhhhhh...........hhhhh....eeeee....hhhhh....hhhhh..eee.........eeeee........hhhhhhhhhhhhhhhhhhhhh...eeeee..eeeeee..hhhhhhhhhhhhhhhhhhh..............eee..eee..................hhhhhhhhhhhhhhhh.......hhhhhhh.............hhhhhhhhhhhhhhh...............eeeee......eeeeeeee..eeeeeeee......eehhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhh.........eee.......................ee.eeeee....eeeeee.......eeeeee..hhhhhhhhhhhhhhhh......eee.hhhhhhhhhh...ee.hhhhhhhhhhhhhh....eee........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------L-----------------------------------------------------Q----------------Q------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------RT_POL  PDB: A:44-234 UniProt: 643-833                                                                                                                                                         -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNASE_H  PDB: A:434-554 UniProt: 1033-1156                                                                                PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1t05 A    1 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDICKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA  554
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550

Chain B from PDB  Type:PROTEIN  Length:414
 aligned with POL_HV1H2 | P04585 from UniProtKB/Swiss-Prot  Length:1435

    Alignment length:427
                                   599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009       
           POL_HV1H2    590 SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQL 1016
               SCOP domains d1t05b_ B: HIV-1 reverse transcriptase                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1t05B01 B:3-93,B:116-156 HIV Type 1 Reverse Transcriptase, subunit A, domain 1             1t05B02               1t05B01 B:3-93,B:116-156                 1t05B02 B:94-115,B:157-237  [code=3.30.70.270, no name define             d]     1t05B03 B:238-319  [code=3.30.70.270, no name defined]                            1t05B04 B:320-429  [code=3.30.70.270, no name defined]                                                         CATH domains
               Pfam domains ------------------------------------------------------------RVT_1-1t05B01 B:63-234                                                                                                                                                      ---RVT_thumb-1t05B03 B:238-307                                           ---------RVT_connect-1t05B02 B:317-419                                                                          ---------- Pfam domains
         Sec.struct. author ........................hhhhhhhhhhhhhhh...................................hhhhhh.hhhhhh........hhhhhh..eeeee.hhhhhhh..hhhhhh.......hhhhh...............hhhhhhhhhhhhhhhhhhhh.....eeeee..eeeee...hhhhhhhhhhhhhhhhhh......-------------..ee...................hhhhhhhhhhhhhhhhhh....hhhhhh..............hhhhhhhhhhhhhhh...............eeeeee.....eeeeee.......eeeee........hhhhhhhhhhhhhhhhhhhh.....eeee..hhhhhhhhhhhhh.......eee............. Sec.struct. author
             SAPs(SNPs) (1) --------------------------------------L--A-------R-D-------V--R-AGAE---II-L----------GG--I-------IE-E--A-I------FY-IS---------------L--K------M-----M----AS---L-----------------D-C--I---CIA-----------------Y-WK--FF--------------------L-T--------------------------------------------I----------------------------------F--------------D----------------------------------------------------I------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------D----------------------ENDR---VL------------SK-----------P-N--I----------------------------M------------------------------------------------T---H-C------------------------Y---------------------------------------------------------------------------------------------------------------------E------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
             SAPs(SNPs) (3) ----------------------------------------------------------------GYGS----M-------------------------Q-R--M----------------------------T------------------------------------------------V---L-E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3)
             SAPs(SNPs) (4) ----------------------------------------------------------------N-N-----T------------------------------------------------------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4)
             SAPs(SNPs) (5) ----------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5)
             SAPs(SNPs) (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (6)
             SAPs(SNPs) (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (7)
                    PROSITE -----------------------------------------RT_POL  PDB: B:44-234 UniProt: 631-821                                                                                                                                                         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1t05 B    3 SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTP-------------GYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLSKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQL  429
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212    |    -       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       
                                                                                                                                                                                                                                                217           231

Chain P from PDB  Type:DNA  Length:20
                                                     
                1t05 P  803 CAGTCCCTGTTCGGgCGCCg  822
                                   812    |  822
                                        817-MRG|
                                             822-DDG

Chain T from PDB  Type:DNA  Length:24
                                                         
                1t05 T  702 TGGTCGGCGCCCGAACAGGGACTG  725
                                   711       721

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 3)

CATH Domains (3, 9)

Pfam Domains (7, 7)

Gene Ontology (59, 104)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (POL_HV1B1 | P03366)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003887	DNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0004523	RNA-DNA hybrid ribonuclease activity	Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
	GO:0003964	RNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time.
	GO:0004190	aspartic-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0004533	exoribonuclease H activity	Catalysis of the exonucleolytic cleavage of RNA to 5'-phosphomonoester oligonucleotides in both 5' to 3' and 3' to 5' directions.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0015074	DNA integration	The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
	GO:0006310	DNA recombination	Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	The chemical reactions and pathways involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0006278	RNA-dependent DNA biosynthetic process	A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand.
	GO:0075713	establishment of integrated proviral latency	A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0039526	modulation by virus of host apoptotic process	Any process in which a virus modulates the frequency, rate or extent of apoptosis of infected host cells.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0039657	suppression by virus of host gene expression	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0075732	viral penetration into host nucleus	The crossing by the virus of the host nuclear membrane, either as naked viral genome or for small viruses as an intact capsid.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019076	viral release from host cell	The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0044174	host cell endosome	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0072494	host multivesicular body	A late endosome in which regions of the limiting host cell endosomal membrane invaginate to form internal vesicles; host membrane proteins that enter the internal vesicles are sequestered from the host cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019028	viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
	GO:0019013	viral nucleocapsid	The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Chain B (POL_HV1H2 | P04585)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003887	DNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0004523	RNA-DNA hybrid ribonuclease activity	Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
	GO:0003964	RNA-directed DNA polymerase activity	Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time.
	GO:0004190	aspartic-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0004533	exoribonuclease H activity	Catalysis of the exonucleolytic cleavage of RNA to 5'-phosphomonoester oligonucleotides in both 5' to 3' and 3' to 5' directions.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0008907	integrase activity	Catalysis of the integration of one segment of DNA into another.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0005198	structural molecule activity	The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0015074	DNA integration	The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome.
	GO:0006310	DNA recombination	Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	The chemical reactions and pathways involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0006278	RNA-dependent DNA biosynthetic process	A DNA biosynthetic process that uses RNA as a template for RNA-dependent DNA polymerases (e.g. reverse transcriptase) that synthesize the new strand.
	GO:0030260	entry into host cell	The invasion by an organism of a cell of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0075713	establishment of integrated proviral latency	A process by which the virus integrates into the host genome and establishes as a stable provirus or prophage.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0039526	modulation by virus of host apoptotic process	Any process in which a virus modulates the frequency, rate or extent of apoptosis of infected host cells.
	GO:0051169	nuclear transport	The directed movement of substances into, out of, or within the nucleus.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0039657	suppression by virus of host gene expression	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
	GO:0019061	uncoating of virus	The process by which an incoming virus is disassembled in the host cell to release a replication-competent viral genome.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0019072	viral genome packaging	The encapsulation of the viral genome within the capsid.
	GO:0019058	viral life cycle	A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
	GO:0075732	viral penetration into host nucleus	The crossing by the virus of the host nuclear membrane, either as naked viral genome or for small viruses as an intact capsid.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019076	viral release from host cell	The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
	GO:0019068	virion assembly	A late phase of the viral life cycle during which all the components necessary for the formation of a mature virion collect at a particular site in the cell and the basic structure of the virus particle is formed.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0044174	host cell endosome	A membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to host cell lysosomes for degradation.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0042025	host cell nucleus	A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0072494	host multivesicular body	A late endosome in which regions of the limiting host cell endosomal membrane invaginate to form internal vesicles; host membrane proteins that enter the internal vesicles are sequestered from the host cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
	GO:0019028	viral capsid	The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
	GO:0019013	viral nucleocapsid	The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 10)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (92, 92)

PROSITE Motifs (2, 3)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 3)

CATH Domains (3, 9)

Pfam Domains (7, 7)

Gene Ontology (59, 104)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File