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Summary Information (see also Sequences/Alignments below) |
Asymmetric Unit (2, 8) Biological Unit 1 (1, 1) Biological Unit 2 (1, 1) |
Asymmetric Unit (8, 8)
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(no "SS Bond" information available for 1RTD) |
Asymmetric Unit
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Asymmetric Unit (92, 184)
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Asymmetric Unit (2, 6)
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(no "Exon" information available for 1RTD) |
Asymmetric UnitChain A from PDB Type:PROTEIN Length:554 aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447 Alignment length:554 609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 1019 1029 1039 1049 1059 1069 1079 1089 1099 1109 1119 1129 1139 1149 POL_HV1B1 600 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 1153 SCOP domains d1rtda2 A:1-429 HIV-1 reverse transcriptase d1rtda1 A:430-554 HIV RNase H (Domain of reverse transcriptase) SCOP domains CATH domains 1rtdA01 A:1-90,A:116-156 HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1rtdA02 1rtdA01 A:1-90,A:116-156 1rtdA02 A:91-115,A:157-225 [code=3.30.70.270, no name defined] 1rtdA03 A:226-319 [code=3.30.70.270, no name defined] 1rtdA04 A:320-426 [code=3.30.70.270, no name defined] 1rtdA05 A:427-554 [code=3.30.420.10, no name defined] CATH domains Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------L-----------------------------------------------------Q----------------Q------------------------- SAPs(SNPs) PROSITE (2) -------------------------------------------RT_POL PDB: A:44-234 UniProt: 643-833 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNASE_H PDB: A:434-554 UniProt: 1033-1156 PROSITE (1) Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1rtd A 1 KISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDICKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTDTTNQKTQLQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDESESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 554 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 Chain B from PDB Type:PROTEIN Length:414 aligned with POL_HV1H2 | P04585 from UniProtKB/Swiss-Prot Length:1435 Alignment length:427 599 609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 POL_HV1H2 590 SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQL 1016 SCOP domains d1rtdb_ B: HIV-1 reverse transcriptase SCOP domains CATH domains 1rtdB01 B:3-93,B:116-156 HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1rtdB02 1rtdB01 B:3-93,B:116-156 1rtdB02 B:94-115,B:157-237 [code=3.30.70.270, no name define d] 1rtdB03 B:238-319 [code=3.30.70.270, no name defined] 1rtdB04 B:320-429 [code=3.30.70.270, no name defined] CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) (1) --------------------------------------L--A-------R-D-------V--R-AGAE---II-L----------GG--I-------IE-E--A-I------FY-IS---------------L--K------M-----M----AS---L-----------------D-C--I---CIA-----------------Y-WK--FF--------------------L-T--------------------------------------------I----------------------------------F--------------D----------------------------------------------------I------------------------------------------- SAPs(SNPs) (1) SAPs(SNPs) (2) -----------------------------------------D----------------------ENDR---VL------------SK-----------P-N--I----------------------------M------------------------------------------------T---H-C------------------------Y---------------------------------------------------------------------------------------------------------------------E------------------------------------------------------------------------------------------------ SAPs(SNPs) (2) SAPs(SNPs) (3) ----------------------------------------------------------------GYGS----M-------------------------Q-R--M----------------------------T------------------------------------------------V---L-E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3) SAPs(SNPs) (4) ----------------------------------------------------------------N-N-----T------------------------------------------------------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4) SAPs(SNPs) (5) ----------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5) SAPs(SNPs) (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (6) SAPs(SNPs) (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (7) PROSITE -----------------------------------------RT_POL PDB: B:44-234 UniProt: 631-821 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1rtd B 3 SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTP-------------GYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQL 429 12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 | - 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382 392 402 412 422 217 231 Chain C from PDB Type:PROTEIN Length:554 aligned with POL_HV1B1 | P03366 from UniProtKB/Swiss-Prot Length:1447 Alignment length:554 609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 1019 1029 1039 1049 1059 1069 1079 1089 1099 1109 1119 1129 1139 1149 POL_HV1B1 600 PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTNTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 1153 SCOP domains d1rtdc2 C:1-429 HIV-1 reverse transcriptase d1rtdc1 C:430-554 HIV RNase H (Domain of reverse transcriptase) SCOP domains CATH domains 1rtdC01 C:1-90,C:116-156 HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1rtdC02 1rtdC01 C:1-90,C:116-156 1rtdC02 C:91-115,C:157-225 [code=3.30.70.270, no name defined] 1rtdC03 C:226-319 [code=3.30.70.270, no name defined] 1rtdC04 C:320-426 [code=3.30.70.270, no name defined] 1rtdC05 C:427-554 [code=3.30.420.10, no name defined] CATH domains Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------R------L-----------------------------------------------------Q----------------Q------------------------- SAPs(SNPs) PROSITE (2) -------------------------------------------RT_POL PDB: C:44-234 UniProt: 643-833 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2) PROSITE (1) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RNASE_H PDB: C:434-554 UniProt: 1033-1156 PROSITE (1) Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1rtd C 1 KISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDICKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLTDTTNQKTQLQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDESESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSA 554 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 Chain D from PDB Type:PROTEIN Length:414 aligned with POL_HV1H2 | P04585 from UniProtKB/Swiss-Prot Length:1435 Alignment length:427 599 609 619 629 639 649 659 669 679 689 699 709 719 729 739 749 759 769 779 789 799 809 819 829 839 849 859 869 879 889 899 909 919 929 939 949 959 969 979 989 999 1009 POL_HV1H2 590 SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQL 1016 SCOP domains d1rtdd_ D: HIV-1 reverse transcriptase SCOP domains CATH domains 1rtdD01 D:3-93,D:116-156 HIV Type 1 Reverse Transcriptase, subunit A, domain 1 1rtdD02 1rtdD01 D:3-93,D:116-156 1rtdD02 D:94-115,D:157-237 [code=3.30.70.270, no name define d] 1rtdD03 D:238-319 [code=3.30.70.270, no name defined] 1rtdD04 D:320-429 [code=3.30.70.270, no name defined] CATH domains Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains SAPs(SNPs) (1) --------------------------------------L--A-------R-D-------V--R-AGAE---II-L----------GG--I-------IE-E--A-I------FY-IS---------------L--K------M-----M----AS---L-----------------D-C--I---CIA-----------------Y-WK--FF--------------------L-T--------------------------------------------I----------------------------------F--------------D----------------------------------------------------I------------------------------------------- SAPs(SNPs) (1) SAPs(SNPs) (2) -----------------------------------------D----------------------ENDR---VL------------SK-----------P-N--I----------------------------M------------------------------------------------T---H-C------------------------Y---------------------------------------------------------------------------------------------------------------------E------------------------------------------------------------------------------------------------ SAPs(SNPs) (2) SAPs(SNPs) (3) ----------------------------------------------------------------GYGS----M-------------------------Q-R--M----------------------------T------------------------------------------------V---L-E----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (3) SAPs(SNPs) (4) ----------------------------------------------------------------N-N-----T------------------------------------------------------------------------------------------------------------------Q----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (4) SAPs(SNPs) (5) ----------------------------------------------------------------S--------------------------------------------------------------------------------------------------------------------------S----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (5) SAPs(SNPs) (6) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (6) SAPs(SNPs) (7) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (7) PROSITE -----------------------------------------RT_POL PDB: D:44-234 UniProt: 631-821 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1rtd D 3 SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTP-------------GYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQL 429 12 22 32 42 52 62 72 82 92 102 112 122 132 142 152 162 172 182 192 202 212 | - 232 242 252 262 272 282 292 302 312 322 332 342 352 362 372 382 392 402 412 422 217 231 Chain E from PDB Type:DNA Length:25 1rtd E 3 GCACCGGCGCTCGAACAGGGACTGT 27 12 22 Chain F from PDB Type:DNA Length:21 1rtd F 2 CAGTCCCTGTTCGAGCGCCGG 22 11 21 Chain G from PDB Type:DNA Length:25 1rtd G 3 GCACCGGCGCTCGAACAGGGACTGT 27 12 22 Chain H from PDB Type:DNA Length:21 1rtd H 2 CAGTCCCTGTTCGAGCGCCGG 22 11 21
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Asymmetric Unit
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Asymmetric Unit
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(no "Pfam Domain" information available for 1RTD) |
Asymmetric Unit(hide GO term definitions) Chain A,C (POL_HV1B1 | P03366)
Chain B,D (POL_HV1H2 | P04585)
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