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1T05
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (180 KB)
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(1)
Title
:
HIV-1 REVERSE TRANSCRIPTASE CROSSLINKED TO TEMPLATE-PRIMER WITH TENOFOVIR-DIPHOSPHATE BOUND AS THE INCOMING NUCLEOTIDE SUBSTRATE
Authors
:
S. Tuske, S. G. Sarafianos, J. Ding, E. Arnold
Date
:
07 Apr 04 (Deposition) - 11 May 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,P,T
Biol. Unit 1: A,B,P,T (1x)
Keywords
:
Hiv-1 Reverse Transcriptase, Tenofovir, Rt-Dna Complex, Transferase- Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Tuske, S. G. Sarafianos, A. D. Clark Jr. , J. Ding, L. K. Naeger, K. L. White, M. D. Miller, C. S. Gibbs, P. L. Boyer, P. Clark, G. Wang, B. L. Gaffney, R. A. Jones, D. M. Jerina, S. H. Hughes, E. Arnold
Structures Of Hiv-1 Rt-Dna Complexes Before And After Incorporation Of The Anti-Aids Drug Tenofovir
Nat. Struct. Mol. Biol. V. 11 469 2004
[
close entry info
]
Hetero Components
(5, 10)
Info
All Hetero Components
1a: 2',3'-DIDEOXY-GUANOSINE-5'-MONOPHO... (DDGa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUAN... (MRGa)
5a: [2-(6-AMINO-9H-PURIN-9-YL)-1-METHY... (TNVa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DDG
1
Mod. Nucleotide
2',3'-DIDEOXY-GUANOSINE-5'-MONOPHOSPHATE
2
GOL
5
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
MRG
1
Mod. Nucleotide
N2-(3-MERCAPTOPROPYL)-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
5
TNV
1
Ligand/Ion
[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYL-TRIPHOSPHATE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:110 , VAL A:111 , ASP A:185 , TNV A:823
BINDING SITE FOR RESIDUE MG A 600
2
AC2
SOFTWARE
ASP A:443 , ASP A:498
BINDING SITE FOR RESIDUE MG A 601
3
AC3
SOFTWARE
LYS A:65 , ARG A:72 , ASP A:110 , VAL A:111 , GLY A:112 , ASP A:113 , ALA A:114 , GLN A:151 , ASP A:185 , LYS A:219 , MG A:600 , DDG P:822 , DT T:705 , DC T:706
BINDING SITE FOR RESIDUE TNV A 823
4
AC4
SOFTWARE
LYS A:101 , LYS A:103 , VAL A:106 , TYR A:188 , HIS A:235 , PRO A:236 , TYR A:318 , HOH A:827
BINDING SITE FOR RESIDUE GOL A 824
5
AC5
SOFTWARE
GLU A:328 , GLN A:340 , TYR A:342 , PRO A:345 , GOL A:826 , HOH A:829
BINDING SITE FOR RESIDUE GOL A 825
6
AC6
SOFTWARE
GLN A:330 , GLN A:340 , GOL A:825
BINDING SITE FOR RESIDUE GOL A 826
7
AC7
SOFTWARE
ASP B:76 , ARG B:78 , GLU B:79 , LYS B:82 , GLU B:413 , GOL B:439
BINDING SITE FOR RESIDUE GOL B 438
8
AC8
SOFTWARE
GOL B:438
BINDING SITE FOR RESIDUE GOL B 439
[
close Site info
]
SAPs(SNPs)/Variants
(92, 92)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_POL_HV1H2_069 (M41L, chain B, )
02: VAR_POL_HV1H2_070 (E44A, chain B, )
03: VAR_POL_HV1H2_071 (E44D, chain B, )
04: VAR_POL_HV1H2_072 (P52R, chain B, )
05: VAR_POL_HV1H2_073 (N54D, chain B, )
06: VAR_POL_HV1H2_074 (A62V, chain B, )
07: VAR_POL_HV1H2_075 (K65R, chain B, )
08: VAR_POL_HV1H2_076 (D67A, chain B, )
09: VAR_POL_HV1H2_077 (D67E, chain B, )
10: VAR_POL_HV1H2_078 (D67G, chain B, )
11: VAR_POL_HV1H2_079 (D67N, chain B, )
12: VAR_POL_HV1H2_080 (D67S, chain B, )
13: VAR_POL_HV1H2_081 (S68G, chain B, )
14: VAR_POL_HV1H2_082 (S68N, chain B, )
15: VAR_POL_HV1H2_083 (S68Y, chain B, )
16: VAR_POL_HV1H2_084 (T69A, chain B, )
17: VAR_POL_HV1H2_085 (T69D, chain B, )
18: VAR_POL_HV1H2_086 (T69G, chain B, )
19: VAR_POL_HV1H2_087 (T69N, chain B, )
20: VAR_POL_HV1H2_088 (K70E, chain B, )
21: VAR_POL_HV1H2_089 (K70R, chain B, )
22: VAR_POL_HV1H2_090 (K70S, chain B, )
23: VAR_POL_HV1H2_091 (L74I, chain B, )
24: VAR_POL_HV1H2_092 (L74V, chain B, )
25: VAR_POL_HV1H2_093 (V75I, chain B, )
26: VAR_POL_HV1H2_094 (V75L, chain B, )
27: VAR_POL_HV1H2_095 (V75M, chain B, )
28: VAR_POL_HV1H2_096 (V75T, chain B, )
29: VAR_POL_HV1H2_097 (F77L, chain B, )
30: VAR_POL_HV1H2_098 (W88G, chain B, )
31: VAR_POL_HV1H2_099 (W88S, chain B, )
32: VAR_POL_HV1H2_100 (E89G, chain B, )
33: VAR_POL_HV1H2_101 (E89K, chain B, )
34: VAR_POL_HV1H2_102 (L92I, chain B, )
35: VAR_POL_HV1H2_103 (L100I, chain B, )
36: VAR_POL_HV1H2_104 (K101E, chain B, )
37: VAR_POL_HV1H2_105 (K101P, chain B, )
38: VAR_POL_HV1H2_106 (K101Q, chain B, )
39: VAR_POL_HV1H2_107 (K103E, chain B, )
40: VAR_POL_HV1H2_108 (K103N, chain B, )
41: VAR_POL_HV1H2_109 (K103R, chain B, )
42: VAR_POL_HV1H2_110 (V106A, chain B, )
43: VAR_POL_HV1H2_111 (V106I, chain B, )
44: VAR_POL_HV1H2_112 (V106M, chain B, )
45: VAR_POL_HV1H2_113 (V108I, chain B, )
46: VAR_POL_HV1H2_114 (Y115F, chain B, )
47: VAR_POL_HV1H2_115 (F116Y, chain B, )
48: VAR_POL_HV1H2_116 (V118I, chain B, )
49: VAR_POL_HV1H2_117 (P119S, chain B, )
50: VAR_POL_HV1H2_118 (I135L, chain B, )
51: VAR_POL_HV1H2_119 (I135M, chain B, )
52: VAR_POL_HV1H2_120 (I135T, chain B, )
53: VAR_POL_HV1H2_121 (E138K, chain B, )
54: VAR_POL_HV1H2_122 (Q145M, chain B, )
55: VAR_POL_HV1H2_123 (Q151M, chain B, )
56: VAR_POL_HV1H2_124 (S156A, chain B, )
57: VAR_POL_HV1H2_125 (P157S, chain B, )
58: VAR_POL_HV1H2_126 (Q161L, chain B, )
59: VAR_POL_HV1B1_003 (K172R, chain A, )
60: VAR_POL_HV1H2_127 (V179D, chain B, )
61: VAR_POL_HV1H2_128 (Y181C, chain B, )
62: VAR_POL_HV1H2_129 (M184I, chain B, )
63: VAR_POL_HV1H2_130 (M184T, chain B, )
64: VAR_POL_HV1H2_131 (M184V, chain B, )
65: VAR_POL_HV1H2_132 (Y188C, chain B, )
66: VAR_POL_HV1H2_133 (Y188H, chain B, )
67: VAR_POL_HV1H2_134 (Y188L, chain B, )
68: VAR_POL_HV1H2_135 (V189I, chain B, )
69: VAR_POL_HV1H2_136 (G190A, chain B, )
70: VAR_POL_HV1H2_137 (G190C, chain B, )
71: VAR_POL_HV1H2_138 (G190E, chain B, )
72: VAR_POL_HV1H2_139 (G190Q, chain B, )
73: VAR_POL_HV1H2_140 (G190S, chain B, )
74: VAR_POL_HV1H2_141 (G190T, chain B, )
75: VAR_POL_HV1H2_142 (G190V, chain B, )
76: VAR_POL_HV1H2_143 (H208Y, chain B, )
77: VAR_POL_HV1H2_144 (L210W, chain B, )
78: VAR_POL_HV1H2_145 (R211K, chain B, )
79: VAR_POL_HV1H2_146 (L214F, chain B, )
80: VAR_POL_HV1H2_147 (T215F, chain B, )
81: VAR_POL_HV1H2_148 (T215Y, chain B, )
82: VAR_POL_HV1H2_153 (P236L, chain B, )
83: VAR_POL_HV1H2_154 (K238T, chain B, )
84: VAR_POL_HV1H2_155 (L283I, chain B, )
85: VAR_POL_HV1H2_156 (Y318F, chain B, )
86: VAR_POL_HV1H2_157 (G333D, chain B, )
87: VAR_POL_HV1H2_158 (G333E, chain B, )
88: VAR_POL_HV1H2_159 (T386I, chain B, )
89: VAR_POL_HV1B1_004 (K451R, chain A, )
90: VAR_POL_HV1B1_005 (V458L, chain A, )
91: VAR_POL_HV1B1_006 (K512Q, chain A, )
92: VAR_POL_HV1B1_007 (E529Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_POL_HV1H2_069
*
M
628
L
POL_HV1H2
---
---
B
M
41
L
02
UniProt
VAR_POL_HV1H2_070
*
E
631
A
POL_HV1H2
---
---
B
E
44
A
03
UniProt
VAR_POL_HV1H2_071
*
E
631
D
POL_HV1H2
---
---
B
E
44
D
04
UniProt
VAR_POL_HV1H2_072
*
P
639
R
POL_HV1H2
---
---
B
P
52
R
05
UniProt
VAR_POL_HV1H2_073
*
N
641
D
POL_HV1H2
---
---
B
N
54
D
06
UniProt
VAR_POL_HV1H2_074
*
A
649
V
POL_HV1H2
---
---
B
A
62
V
07
UniProt
VAR_POL_HV1H2_075
*
K
652
R
POL_HV1H2
---
---
B
K
65
R
08
UniProt
VAR_POL_HV1H2_076
*
D
654
A
POL_HV1H2
---
---
B
D
67
A
09
UniProt
VAR_POL_HV1H2_077
*
D
654
E
POL_HV1H2
---
---
B
D
67
E
10
UniProt
VAR_POL_HV1H2_078
*
D
654
G
POL_HV1H2
---
---
B
D
67
G
11
UniProt
VAR_POL_HV1H2_079
*
D
654
N
POL_HV1H2
---
---
B
D
67
N
12
UniProt
VAR_POL_HV1H2_080
*
D
654
S
POL_HV1H2
---
---
B
D
67
S
13
UniProt
VAR_POL_HV1H2_081
*
S
655
G
POL_HV1H2
---
---
B
S
68
G
14
UniProt
VAR_POL_HV1H2_082
*
S
655
N
POL_HV1H2
---
---
B
S
68
N
15
UniProt
VAR_POL_HV1H2_083
*
S
655
Y
POL_HV1H2
---
---
B
S
68
Y
16
UniProt
VAR_POL_HV1H2_084
*
T
656
A
POL_HV1H2
---
---
B
T
69
A
17
UniProt
VAR_POL_HV1H2_085
*
T
656
D
POL_HV1H2
---
---
B
T
69
D
18
UniProt
VAR_POL_HV1H2_086
*
T
656
G
POL_HV1H2
---
---
B
T
69
G
19
UniProt
VAR_POL_HV1H2_087
*
T
656
N
POL_HV1H2
---
---
B
T
69
N
20
UniProt
VAR_POL_HV1H2_088
*
K
657
E
POL_HV1H2
---
---
B
K
70
E
21
UniProt
VAR_POL_HV1H2_089
*
K
657
R
POL_HV1H2
---
---
B
K
70
R
22
UniProt
VAR_POL_HV1H2_090
*
K
657
S
POL_HV1H2
---
---
B
K
70
S
23
UniProt
VAR_POL_HV1H2_091
*
L
661
I
POL_HV1H2
---
---
B
L
74
I
24
UniProt
VAR_POL_HV1H2_092
*
L
661
V
POL_HV1H2
---
---
B
L
74
V
25
UniProt
VAR_POL_HV1H2_093
*
V
662
I
POL_HV1H2
---
---
B
V
75
I
26
UniProt
VAR_POL_HV1H2_094
*
V
662
L
POL_HV1H2
---
---
B
V
75
L
27
UniProt
VAR_POL_HV1H2_095
*
V
662
M
POL_HV1H2
---
---
B
V
75
M
28
UniProt
VAR_POL_HV1H2_096
*
V
662
T
POL_HV1H2
---
---
B
V
75
T
29
UniProt
VAR_POL_HV1H2_097
*
F
664
L
POL_HV1H2
---
---
B
F
77
L
30
UniProt
VAR_POL_HV1H2_098
*
W
675
G
POL_HV1H2
---
---
B
W
88
G
31
UniProt
VAR_POL_HV1H2_099
*
W
675
S
POL_HV1H2
---
---
B
W
88
S
32
UniProt
VAR_POL_HV1H2_100
*
E
676
G
POL_HV1H2
---
---
B
E
89
G
33
UniProt
VAR_POL_HV1H2_101
*
E
676
K
POL_HV1H2
---
---
B
E
89
K
34
UniProt
VAR_POL_HV1H2_102
*
L
679
I
POL_HV1H2
---
---
B
L
92
I
35
UniProt
VAR_POL_HV1H2_103
*
L
687
I
POL_HV1H2
---
---
B
L
100
I
36
UniProt
VAR_POL_HV1H2_104
*
K
688
E
POL_HV1H2
---
---
B
K
101
E
37
UniProt
VAR_POL_HV1H2_105
*
K
688
P
POL_HV1H2
---
---
B
K
101
P
38
UniProt
VAR_POL_HV1H2_106
*
K
688
Q
POL_HV1H2
---
---
B
K
101
Q
39
UniProt
VAR_POL_HV1H2_107
*
K
690
E
POL_HV1H2
---
---
B
K
103
E
40
UniProt
VAR_POL_HV1H2_108
*
K
690
N
POL_HV1H2
---
---
B
K
103
N
41
UniProt
VAR_POL_HV1H2_109
*
K
690
R
POL_HV1H2
---
---
B
K
103
R
42
UniProt
VAR_POL_HV1H2_110
*
V
693
A
POL_HV1H2
---
---
B
V
106
A
43
UniProt
VAR_POL_HV1H2_111
*
V
693
I
POL_HV1H2
---
---
B
V
106
I
44
UniProt
VAR_POL_HV1H2_112
*
V
693
M
POL_HV1H2
---
---
B
V
106
M
45
UniProt
VAR_POL_HV1H2_113
*
V
695
I
POL_HV1H2
---
---
B
V
108
I
46
UniProt
VAR_POL_HV1H2_114
*
Y
702
F
POL_HV1H2
---
---
B
Y
115
F
47
UniProt
VAR_POL_HV1H2_115
*
F
703
Y
POL_HV1H2
---
---
B
F
116
Y
48
UniProt
VAR_POL_HV1H2_116
*
V
705
I
POL_HV1H2
---
---
B
V
118
I
49
UniProt
VAR_POL_HV1H2_117
*
P
706
S
POL_HV1H2
---
---
B
P
119
S
50
UniProt
VAR_POL_HV1H2_118
*
I
722
L
POL_HV1H2
---
---
B
I
135
L
51
UniProt
VAR_POL_HV1H2_119
*
I
722
M
POL_HV1H2
---
---
B
I
135
M
52
UniProt
VAR_POL_HV1H2_120
*
I
722
T
POL_HV1H2
---
---
B
I
135
T
53
UniProt
VAR_POL_HV1H2_121
*
E
725
K
POL_HV1H2
---
---
B
E
138
K
54
UniProt
VAR_POL_HV1H2_122
*
Q
732
M
POL_HV1H2
---
---
B
Q
145
M
55
UniProt
VAR_POL_HV1H2_123
*
Q
738
M
POL_HV1H2
---
---
B
Q
151
M
56
UniProt
VAR_POL_HV1H2_124
*
S
743
A
POL_HV1H2
---
---
B
S
156
A
57
UniProt
VAR_POL_HV1H2_125
*
P
744
S
POL_HV1H2
---
---
B
P
157
S
58
UniProt
VAR_POL_HV1H2_126
*
Q
748
L
POL_HV1H2
---
---
B
Q
161
L
59
UniProt
VAR_POL_HV1B1_003
*
K
771
R
POL_HV1B1
---
---
A
K
172
R
60
UniProt
VAR_POL_HV1H2_127
*
V
766
D
POL_HV1H2
---
---
B
V
179
D
61
UniProt
VAR_POL_HV1H2_128
*
Y
768
C
POL_HV1H2
---
---
B
Y
181
C
62
UniProt
VAR_POL_HV1H2_129
*
M
771
I
POL_HV1H2
---
---
B
M
184
I
63
UniProt
VAR_POL_HV1H2_130
*
M
771
T
POL_HV1H2
---
---
B
M
184
T
64
UniProt
VAR_POL_HV1H2_131
*
M
771
V
POL_HV1H2
---
---
B
M
184
V
65
UniProt
VAR_POL_HV1H2_132
*
Y
775
C
POL_HV1H2
---
---
B
Y
188
C
66
UniProt
VAR_POL_HV1H2_133
*
Y
775
H
POL_HV1H2
---
---
B
Y
188
H
67
UniProt
VAR_POL_HV1H2_134
*
Y
775
L
POL_HV1H2
---
---
B
Y
188
L
68
UniProt
VAR_POL_HV1H2_135
*
V
776
I
POL_HV1H2
---
---
B
V
189
I
69
UniProt
VAR_POL_HV1H2_136
*
G
777
A
POL_HV1H2
---
---
B
G
190
A
70
UniProt
VAR_POL_HV1H2_137
*
G
777
C
POL_HV1H2
---
---
B
G
190
C
71
UniProt
VAR_POL_HV1H2_138
*
G
777
E
POL_HV1H2
---
---
B
G
190
E
72
UniProt
VAR_POL_HV1H2_139
*
G
777
Q
POL_HV1H2
---
---
B
G
190
Q
73
UniProt
VAR_POL_HV1H2_140
*
G
777
S
POL_HV1H2
---
---
B
G
190
S
74
UniProt
VAR_POL_HV1H2_141
*
G
777
T
POL_HV1H2
---
---
B
G
190
T
75
UniProt
VAR_POL_HV1H2_142
*
G
777
V
POL_HV1H2
---
---
B
G
190
V
76
UniProt
VAR_POL_HV1H2_143
*
H
795
Y
POL_HV1H2
---
---
B
H
208
Y
77
UniProt
VAR_POL_HV1H2_144
*
L
797
W
POL_HV1H2
---
---
B
L
210
W
78
UniProt
VAR_POL_HV1H2_145
*
R
798
K
POL_HV1H2
---
---
B
R
211
K
79
UniProt
VAR_POL_HV1H2_146
*
L
801
F
POL_HV1H2
---
---
B
L
214
F
80
UniProt
VAR_POL_HV1H2_147
*
T
802
F
POL_HV1H2
---
---
B
T
215
F
81
UniProt
VAR_POL_HV1H2_148
*
T
802
Y
POL_HV1H2
---
---
B
T
215
Y
82
UniProt
VAR_POL_HV1H2_153
*
P
823
L
POL_HV1H2
---
---
B
P
236
L
83
UniProt
VAR_POL_HV1H2_154
*
K
825
T
POL_HV1H2
---
---
B
K
238
T
84
UniProt
VAR_POL_HV1H2_155
*
L
870
I
POL_HV1H2
---
---
B
L
283
I
85
UniProt
VAR_POL_HV1H2_156
*
Y
905
F
POL_HV1H2
---
---
B
Y
318
F
86
UniProt
VAR_POL_HV1H2_157
*
G
920
D
POL_HV1H2
---
---
B
G
333
D
87
UniProt
VAR_POL_HV1H2_158
*
G
920
E
POL_HV1H2
---
---
B
G
333
E
88
UniProt
VAR_POL_HV1H2_159
*
T
973
I
POL_HV1H2
---
---
B
T
386
I
89
UniProt
VAR_POL_HV1B1_004
*
K
1050
R
POL_HV1B1
---
---
A
K
451
R
90
UniProt
VAR_POL_HV1B1_005
*
V
1057
L
POL_HV1B1
---
---
A
V
458
L
91
UniProt
VAR_POL_HV1B1_006
*
K
1111
Q
POL_HV1B1
---
---
A
K
512
Q
92
UniProt
VAR_POL_HV1B1_007
*
E
1128
Q
POL_HV1B1
---
---
A
E
529
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: RT_POL (B:44-234,A:44-234)
2: RNASE_H (A:434-554)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RT_POL
PS50878
Reverse transcriptase (RT) catalytic domain profile.
POL_HV1H2
631-821
1
B:44-234
POL_HV1B1
643-833
1
A:44-234
2
RNASE_H
PS50879
RNase H domain profile.
POL_HV1B1
1033-1156
1
A:434-554
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Exons
(0, 0)
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1t05a1 (A:430-554)
2a: SCOP_d1t05a2 (A:1-429)
2b: SCOP_d1t05b_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Ribonuclease H-like
(775)
Family
:
Ribonuclease H
(190)
Protein domain
:
HIV RNase H (Domain of reverse transcriptase)
(110)
Human immunodeficiency virus type 1 [TaxId: 11676]
(101)
1a
d1t05a1
A:430-554
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
DNA/RNA polymerases
(850)
Superfamily
:
DNA/RNA polymerases
(850)
Family
:
Reverse transcriptase
(217)
Protein domain
:
HIV-1 reverse transcriptase
(161)
Human immunodeficiency virus type 1 [TaxId: 11676]
(138)
2a
d1t05a2
A:1-429
2b
d1t05b_
B:
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1t05B02 (B:94-115,B:157-237)
1b: CATH_1t05A02 (A:91-115,A:157-225)
1c: CATH_1t05B03 (B:238-319)
1d: CATH_1t05A03 (A:226-319)
1e: CATH_1t05A04 (A:320-426)
1f: CATH_1t05B04 (B:320-429)
2a: CATH_1t05A05 (A:427-554)
3a: CATH_1t05B01 (B:3-93,B:116-156)
3b: CATH_1t05A01 (A:1-90,A:116-156)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.270, no name defined]
(278)
[unclassified]
(58)
1a
1t05B02
B:94-115,B:157-237
1b
1t05A02
A:91-115,A:157-225
1c
1t05B03
B:238-319
1d
1t05A03
A:226-319
1e
1t05A04
A:320-426
1f
1t05B04
B:320-429
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.10, no name defined]
(372)
[unclassified]
(102)
2a
1t05A05
A:427-554
Architecture
:
Roll
(3276)
Topology
:
HIV Type 1 Reverse Transcriptase; Chain A, domain 1
(164)
Homologous Superfamily
:
HIV Type 1 Reverse Transcriptase, subunit A, domain 1
(164)
[unclassified]
(24)
3a
1t05B01
B:3-93,B:116-156
3b
1t05A01
A:1-90,A:116-156
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Pfam Domains
(7, 7)
Info
all PFAM domains
1a: PFAM_RNase_H_1t05A01 (A:435-554)
2a: PFAM_RVT_1_1t05A02 (A:63-234)
3a: PFAM_RVT_1_1t05B01 (B:63-234)
4a: PFAM_RVT_connect_1t05A03 (A:317-419)
5a: PFAM_RVT_connect_1t05B02 (B:317-419)
6a: PFAM_RVT_thumb_1t05A04 (A:238-307)
7a: PFAM_RVT_thumb_1t05B03 (B:238-307)
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)
Clan
:
RNase_H
(288)
Family
:
RNase_H
(128)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(28)
1a
RNase_H-1t05A01
A:435-554
Clan
:
RdRP
(210)
Family
:
RVT_1
(95)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
2a
RVT_1-1t05A02
A:63-234
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
3a
RVT_1-1t05B01
B:63-234
Clan
:
no clan defined [family: RVT_connect]
(84)
Family
:
RVT_connect
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
4a
RVT_connect-1t05A03
A:317-419
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
5a
RVT_connect-1t05B02
B:317-419
Clan
:
no clan defined [family: RVT_thumb]
(84)
Family
:
RVT_thumb
(84)
Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)
(27)
6a
RVT_thumb-1t05A04
A:238-307
Human immunodeficiency virus type 1 group M subtype B (isolate HXB2) (HIV-1)
(57)
7a
RVT_thumb-1t05B03
B:238-307
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