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(-) Description

Title :  CRYSTAL STRUCTURE OF THE 46KDA DOMAIN OF HUMAN CARDIAC TROPONIN IN THE CA2+ SATURATED FORM
 
Authors :  S. Takeda, A. Yamashita, K. Maeda, Y. Maeda
Date :  03 Dec 02  (Deposition) - 15 Jul 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.61
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Thin Filament, Muscle Regulation, Ca2+ Binding Protein, Ef- Hand, Coiled-Coil, Contractile Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Takeda, A. Yamashita, K. Maeda, Y. Maeda
Structure Of The Core Domain Of Human Cardiac Troponin In The Ca2+-Saturated Form
Nature V. 424 35 2003
PubMed-ID: 12840750  |  Reference-DOI: 10.1038/NATURE01780
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TROPONIN C
    ChainsA, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET3D
    Expression System StrainBL21(DE3)PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTNC
    TissueCARDIAC MUSCLE
 
Molecule 2 - TROPONIN T
    ChainsB, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET3D
    Expression System StrainBL21(DE3)PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentCNBR FRAGMENT, RESIDUES 183-288
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTNT
    TissueCARDIAC MUSCLE
 
Molecule 3 - TROPONIN I
    ChainsC, F
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET3D
    Expression System StrainBL21(DE3)PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentRESIDUES 31-163
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymTNI
    TissueCARDIAC MUSCLE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)ABC   
Biological Unit 2 (1x)   DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:65 , ASP A:67 , SER A:69 , THR A:71 , ASP A:73 , GLU A:76BINDING SITE FOR RESIDUE CA A 201
2AC2SOFTWAREASP A:105 , ASN A:107 , ASP A:109 , TYR A:111 , GLU A:116BINDING SITE FOR RESIDUE CA A 202
3AC3SOFTWAREASP A:141 , ASN A:143 , ASP A:145 , ARG A:147 , ILE A:148 , GLU A:152BINDING SITE FOR RESIDUE CA A 203
4AC4SOFTWAREASP D:65 , ASP D:67 , SER D:69 , THR D:71 , GLU D:76BINDING SITE FOR RESIDUE CA D 201
5AC5SOFTWAREASP D:105 , ASN D:107 , ASP D:109 , TYR D:111 , ASP D:113 , GLU D:116BINDING SITE FOR RESIDUE CA D 202
6AC6SOFTWAREASP D:141 , ASN D:143 , ASP D:145 , ARG D:147 , GLU D:152BINDING SITE FOR RESIDUE CA D 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J1D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1J1D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (23, 41)

Asymmetric Unit (23, 41)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_063070A8VTNNC1_HUMANDisease (CMH13)267607125A/DA8V
02UniProtVAR_019776L29QTNNC1_HUMANDisease (CMH13)267607123A/DL29Q
03UniProtVAR_063548K36QTNNI3_HUMANDisease (CMD1FF)267607130CK36Q
04UniProtVAR_029453R79CTNNI3_HUMANPolymorphism3729712C/FR79C
05UniProtVAR_016078P82STNNI3_HUMANDisease (CMH7)77615401C/FP82S
06UniProtVAR_063071C84YTNNC1_HUMANDisease (CMH13)267607126A/DS84Y
07UniProtVAR_067264A116GTNNI3_HUMANDisease (CMD1FF)777177571C/FA116G
08UniProtVAR_063072E134DTNNC1_HUMANDisease (CMH13)397516847A/DE134D
09UniProtVAR_063073D145ETNNC1_HUMANDisease (CMH13)267607124A/DD145E
10UniProtVAR_007603R145GTNNI3_HUMANDisease (CMH7)104894724CR145G
11UniProtVAR_016080R145WTNNI3_HUMANDisease (RCM1)28934871CR145W
12UniProtVAR_019873A157VTNNI3_HUMANDisease (CMH7)397516353C/FA157V
13UniProtVAR_043988G159RTNNC1_HUMANDisease (CMD1Z)  ---A/DG159R
14UniProtVAR_019874R162PTNNI3_HUMANDisease (CMH7)397516354FR162P
15UniProtVAR_042745R162QTNNI3_HUMANDisease (CMH7)397516354FR162Q
16UniProtVAR_043984R215LTNNT2_HUMANDisease (CMD1D)121964860B/ER205L
17UniProtVAR_042748I221TTNNT2_HUMANPolymorphism45520032B/EI211T
18UniProtVAR_057310I231TTNNT2_HUMANPolymorphism45520032B/EI221T
19UniProtVAR_013022S249TTNNT2_HUMANPolymorphism2996495B/ET239T
20UniProtVAR_007610E254DTNNT2_HUMANDisease (CMH2)45466197B/EE244D
21UniProtVAR_007611K263RTNNT2_HUMANPolymorphism3730238B/EK253R
22UniProtVAR_029451N279YTNNT2_HUMANPolymorphism4523540B/EN269Y
23UniProtVAR_019879N281ITNNT2_HUMANDisease (CMH2)863225119B/EN271I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (21, 21)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_063070A8VTNNC1_HUMANDisease (CMH13)267607125AA8V
02UniProtVAR_019776L29QTNNC1_HUMANDisease (CMH13)267607123AL29Q
03UniProtVAR_063548K36QTNNI3_HUMANDisease (CMD1FF)267607130CK36Q
04UniProtVAR_029453R79CTNNI3_HUMANPolymorphism3729712CR79C
05UniProtVAR_016078P82STNNI3_HUMANDisease (CMH7)77615401CP82S
06UniProtVAR_063071C84YTNNC1_HUMANDisease (CMH13)267607126AS84Y
07UniProtVAR_067264A116GTNNI3_HUMANDisease (CMD1FF)777177571CA116G
08UniProtVAR_063072E134DTNNC1_HUMANDisease (CMH13)397516847AE134D
09UniProtVAR_063073D145ETNNC1_HUMANDisease (CMH13)267607124AD145E
10UniProtVAR_007603R145GTNNI3_HUMANDisease (CMH7)104894724CR145G
11UniProtVAR_016080R145WTNNI3_HUMANDisease (RCM1)28934871CR145W
12UniProtVAR_019873A157VTNNI3_HUMANDisease (CMH7)397516353CA157V
13UniProtVAR_043988G159RTNNC1_HUMANDisease (CMD1Z)  ---AG159R
16UniProtVAR_043984R215LTNNT2_HUMANDisease (CMD1D)121964860BR205L
17UniProtVAR_042748I221TTNNT2_HUMANPolymorphism45520032BI211T
18UniProtVAR_057310I231TTNNT2_HUMANPolymorphism45520032BI221T
19UniProtVAR_013022S249TTNNT2_HUMANPolymorphism2996495BT239T
20UniProtVAR_007610E254DTNNT2_HUMANDisease (CMH2)45466197BE244D
21UniProtVAR_007611K263RTNNT2_HUMANPolymorphism3730238BK253R
22UniProtVAR_029451N279YTNNT2_HUMANPolymorphism4523540BN269Y
23UniProtVAR_019879N281ITNNT2_HUMANDisease (CMH2)863225119BN271I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (20, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_063070A8VTNNC1_HUMANDisease (CMH13)267607125DA8V
02UniProtVAR_019776L29QTNNC1_HUMANDisease (CMH13)267607123DL29Q
04UniProtVAR_029453R79CTNNI3_HUMANPolymorphism3729712FR79C
05UniProtVAR_016078P82STNNI3_HUMANDisease (CMH7)77615401FP82S
06UniProtVAR_063071C84YTNNC1_HUMANDisease (CMH13)267607126DS84Y
07UniProtVAR_067264A116GTNNI3_HUMANDisease (CMD1FF)777177571FA116G
08UniProtVAR_063072E134DTNNC1_HUMANDisease (CMH13)397516847DE134D
09UniProtVAR_063073D145ETNNC1_HUMANDisease (CMH13)267607124DD145E
12UniProtVAR_019873A157VTNNI3_HUMANDisease (CMH7)397516353FA157V
13UniProtVAR_043988G159RTNNC1_HUMANDisease (CMD1Z)  ---DG159R
14UniProtVAR_019874R162PTNNI3_HUMANDisease (CMH7)397516354FR162P
15UniProtVAR_042745R162QTNNI3_HUMANDisease (CMH7)397516354FR162Q
16UniProtVAR_043984R215LTNNT2_HUMANDisease (CMD1D)121964860ER205L
17UniProtVAR_042748I221TTNNT2_HUMANPolymorphism45520032EI211T
18UniProtVAR_057310I231TTNNT2_HUMANPolymorphism45520032EI221T
19UniProtVAR_013022S249TTNNT2_HUMANPolymorphism2996495ET239T
20UniProtVAR_007610E254DTNNT2_HUMANDisease (CMH2)45466197EE244D
21UniProtVAR_007611K263RTNNT2_HUMANPolymorphism3730238EK253R
22UniProtVAR_029451N279YTNNT2_HUMANPolymorphism4523540EN269Y
23UniProtVAR_019879N281ITNNT2_HUMANDisease (CMH2)863225119EN271I

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 14)

Asymmetric Unit (2, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.TNNC1_HUMAN33-51
 
52-87
 
92-127
 
128-161
 
  8A:33-51
D:33-51
A:52-87
D:52-87
A:92-127
D:92-127
A:128-161
D:128-161
2EF_HAND_1PS00018 EF-hand calcium-binding domain.TNNC1_HUMAN65-77
 
105-117
 
141-153
 
  6A:65-77
D:65-77
A:105-117
D:105-117
A:141-153
D:141-153
Biological Unit 1 (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.TNNC1_HUMAN33-51
 
52-87
 
92-127
 
128-161
 
  4A:33-51
-
A:52-87
-
A:92-127
-
A:128-161
-
2EF_HAND_1PS00018 EF-hand calcium-binding domain.TNNC1_HUMAN65-77
 
105-117
 
141-153
 
  3A:65-77
-
A:105-117
-
A:141-153
-
Biological Unit 2 (2, 7)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1EF_HAND_2PS50222 EF-hand calcium-binding domain profile.TNNC1_HUMAN33-51
 
52-87
 
92-127
 
128-161
 
  4-
D:33-51
-
D:52-87
-
D:92-127
-
D:128-161
2EF_HAND_1PS00018 EF-hand calcium-binding domain.TNNC1_HUMAN65-77
 
105-117
 
141-153
 
  3-
D:65-77
-
D:105-117
-
D:141-153

(-) Exons   (15, 29)

Asymmetric Unit (15, 29)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002329751ENSE00001063786chr3:52488086-5248800879TNNC1_HUMAN1-882A:1-8
D:2-8
8
7
1.2bENST000002329752bENSE00000770833chr3:52486529-5248649931TNNC1_HUMAN9-19112A:9-19
D:9-19
11
11
1.3ENST000002329753ENSE00000770832chr3:52486268-52486122147TNNC1_HUMAN19-68502A:19-68
D:19-68
50
50
1.4bENST000002329754bENSE00000770831chr3:52485874-52485760115TNNC1_HUMAN68-106392A:68-106 (gaps)
D:68-106
39
39
1.5cENST000002329755cENSE00000770830chr3:52485543-52485407137TNNC1_HUMAN106-152472A:106-152
D:106-152
47
47
1.6ENST000002329756ENSE00001063787chr3:52485322-52485118205TNNC1_HUMAN152-161102A:152-161
D:152-161
10
10

2.2gENST000002369182gENSE00001315772chr1:201342382-20134234241TNNT2_HUMAN1-14140--
2.3aENST000002369183aENSE00001686085chr1:201341283-20134127311TNNT2_HUMAN14-1850--
2.4aENST000002369184aENSE00001444197chr1:201338973-20133894430TNNT2_HUMAN18-28110--
2.5bENST000002369185bENSE00001233153chr1:201337355-20133729066TNNT2_HUMAN28-50230--
2.6bENST000002369186bENSE00001043765chr1:201336934-20133689936TNNT2_HUMAN50-62130--
2.7cENST000002369187cENSE00000796482chr1:201335999-20133596634TNNT2_HUMAN62-73120--
2.7fENST000002369187fENSE00000796481chr1:201334798-20133473861TNNT2_HUMAN73-93210--
2.8cENST000002369188cENSE00000796480chr1:201334435-201334319117TNNT2_HUMAN94-132390--
2.9aENST000002369189aENSE00001043748chr1:201333503-20133342678TNNT2_HUMAN133-158260--
2.9gENST000002369189gENSE00001715169chr1:201332534-201332424111TNNT2_HUMAN159-195370--
2.10aENST0000023691810aENSE00001798058chr1:201331522-2013315149TNNT2_HUMAN196-19830--
2.11bENST0000023691811bENSE00001786343chr1:201331150-201331041110TNNT2_HUMAN199-235372B:202-225
E:200-225
24
26
2.12aENST0000023691812aENSE00001773452chr1:201330497-20133040791TNNT2_HUMAN235-265312B:225-255
E:225-255
31
31
2.13ENST0000023691813ENSE00001709786chr1:201328791-20132875141TNNT2_HUMAN266-279142B:256-269
E:256-269
14
14
2.14eENST0000023691814eENSE00001749651chr1:201328383-201328142242TNNT2_HUMAN279-293152B:269-271
E:269-274
3
6

3.1ENST000003448871ENSE00001524342chr19:55669100-55668947154TNNI3_HUMAN1-440--
3.2ENST000003448872ENSE00001758167chr19:55668676-5566866413TNNI3_HUMAN4-850--
3.3ENST000003448873ENSE00001250420chr19:55668501-5566841884TNNI3_HUMAN9-36281C:35-36
-
2
-
3.4ENST000003448874ENSE00000727912chr19:55668012-5566797142TNNI3_HUMAN37-50142C:37-50
F:37-50
14
14
3.5ENST000003448875ENSE00000727909chr19:55667700-55667569132TNNI3_HUMAN51-94442C:51-94
F:51-94
44
44
3.6ENST000003448876ENSE00000417663chr19:55666198-5566610990TNNI3_HUMAN95-124302C:95-124
F:95-124
30
30
3.7ENST000003448877ENSE00000856455chr19:55665574-55665398177TNNI3_HUMAN125-183592C:125-160 (gaps)
F:125-162 (gaps)
36
38
3.8ENST000003448878ENSE00001250409chr19:55663285-55663138148TNNI3_HUMAN184-210270--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with TNNC1_HUMAN | P63316 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:161
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160 
          TNNC1_HUMAN     1 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE 161
               SCOP domains d1j1da_ A: Troponin C                                                                                                                                             SCOP domains
               CATH domains ------------1j1dA01 A:13-87 EF-hand                                                    1j  1dA02 A:88-152 EF-hand                                       --------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhh....hhhhhhhhhhh.........hhhhhhhhhhhh.....--.hhhhhhhhhhhhh......eehhhhhhhhhhh....hhhhhhhhhhhhh.....eehhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------V--------------------Q------------------------------------------------------Y-------------------------------------------------D----------E-------------R-- SAPs(SNPs)
                PROSITE (1) --------------------------------EF_HAND_2          EF_HAND_2  PDB: A:52-87             ----EF_HAND_2  PDB: A:92-127            EF_HAND_2  PDB: A:128-161          PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------EF_HAND_1    ---------------------------EF_HAND_1    -----------------------EF_HAND_1    -------- PROSITE (2)
           Transcript 1 (1) Exon 1.1Exon 1.2b  ------------------------------------------------Exon 1.4b  PDB: A:68-106 (gaps)        ---------------------------------------------Exon 1.6   Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.3  PDB: A:19-68 UniProt: 19-68             -------------------------------------Exon 1.5c  PDB: A:106-152 UniProt: 106-152     --------- Transcript 1 (2)
                 1j1d A   1 MDDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDS--KSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE 161
                                    10        20        30        40        50        60        70        80        |- |     100       110       120       130       140       150       160 
                                                                                                                   89 92                                                                     

Chain B from PDB  Type:PROTEIN  Length:70
 aligned with TNNT2_HUMAN | P45379 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:70
                                   221       231       241       251       261       271       281
          TNNT2_HUMAN   212 QTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQSIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 281
               SCOP domains d1j1db_ B: Troponin T                                                  SCOP domains
               CATH domains 1j1dB00 B:202-271  [code=1.20.5.350, no name defined]                  CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---L-----T---------T-----------------T----D--------R---------------Y-I SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.11b [INCOMPLETE] ------------------------------Exon 2.13     -- Transcript 2 (1)
           Transcript 2 (2) -----------------------Exon 2.12a  PDB: B:225-255     -------------2.1 Transcript 2 (2)
                 1j1d B 202 QTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 271
                                   211       221       231       241       251       261       271

Chain C from PDB  Type:PROTEIN  Length:118
 aligned with TNNI3_HUMAN | P19429 from UniProtKB/Swiss-Prot  Length:210

    Alignment length:126
                                    44        54        64        74        84        94       104       114       124       134       144       154      
          TNNI3_HUMAN    35 AKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLG 160
               SCOP domains d1j1dc_ C: Troponin I                                                                                                          SCOP domains
               CATH domains 1j1dC01 C:35-146  [code=1.20.5.350, no name defined]                                                            -------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--------.....hhhhhhhhhh. Sec.struct. author
             SAPs(SNPs) (1) -Q------------------------------------------C--S---------------------------------G----------------------------G-----------V--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) --------------------------------------------------------------------------------------------------------------W--------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 3 3.Exon 3.4      Exon 3.5  PDB: C:51-94 UniProt: 51-94       Exon 3.6  PDB: C:95-124       Exon 3.7  PDB: C:125-160 (gaps)      Transcript 3
                 1j1d C  35 AKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR--------RRVRISADAMMQALLG 160
                                    44        54        64        74        84        94       104       114       124       134 |       -|      154      
                                                                                                                               136      145               

Chain D from PDB  Type:PROTEIN  Length:160
 aligned with TNNC1_HUMAN | P63316 from UniProtKB/Swiss-Prot  Length:161

    Alignment length:160
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
          TNNC1_HUMAN     2 DDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE 161
               SCOP domains d1j1dd_ D: Troponin C                                                                                                                                            SCOP domains
               CATH domains ---1j1dD01 D:5-93 EF-hand                                                                   1j1dD02 D:94-157 EF-hand                                        ---- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh..hhhhhhhhhhhhh.......hhhhhhhhhhhhh.......hhhhhhhhhhhhh.....eeehhhhhhhhhh.....hhhhhhhhhhhhh.....eeehhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------V--------------------Q------------------------------------------------------Y-------------------------------------------------D----------E-------------R-- SAPs(SNPs)
                PROSITE (1) -------------------------------EF_HAND_2          EF_HAND_2  PDB: D:52-87             ----EF_HAND_2  PDB: D:92-127            EF_HAND_2  PDB: D:128-161          PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------EF_HAND_1    ---------------------------EF_HAND_1    -----------------------EF_HAND_1    -------- PROSITE (2)
           Transcript 1 (1) 1.1    Exon 1.2b  ------------------------------------------------Exon 1.4b  PDB: D:68-106               ---------------------------------------------Exon 1.6   Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.3  PDB: D:19-68 UniProt: 19-68             -------------------------------------Exon 1.5c  PDB: D:106-152 UniProt: 106-152     --------- Transcript 1 (2)
                 1j1d D   2 DDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFMKGVE 161
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161

Chain E from PDB  Type:PROTEIN  Length:75
 aligned with TNNT2_HUMAN | P45379 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:75
                                   219       229       239       249       259       269       279     
          TNNT2_HUMAN   210 KRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQSIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKV 284
               SCOP domains d1j1de_ E: Troponin T                                                       SCOP domains
               CATH domains 1j1dE00 E:200-274  [code=1.20.5.350, no name defined]                       CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----L-----T---------T-----------------T----D--------R---------------Y-I--- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
           Transcript 2 (1) Exon 2.11b  PDB: E:200-225------------------------------Exon 2.13     ----- Transcript 2 (1)
           Transcript 2 (2) -------------------------Exon 2.12a  PDB: E:225-255     -------------2.14e  Transcript 2 (2)
                 1j1d E 200 KRQTEREKKKKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKV 274
                                   209       219       229       239       249       259       269     

Chain F from PDB  Type:PROTEIN  Length:116
 aligned with TNNI3_HUMAN | P19429 from UniProtKB/Swiss-Prot  Length:210

    Alignment length:126
                                    46        56        66        76        86        96       106       116       126       136       146       156      
          TNNI3_HUMAN    37 KKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRCQPLELAGLGFAELQDLCRQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKFKRPTLRRVRISADAMMQALLGAR 162
               SCOP domains d1j1df_ F: Troponin I                                                                                                          SCOP domains
               CATH domains 1j1dF01 F:37-138  [code=1.20.5.350, no name defined]                                                  ------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.----------.hhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------C--S---------------------------------G----------------------------------------V----P SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------Q SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 3 Exon 3.4      Exon 3.5  PDB: F:51-94 UniProt: 51-94       Exon 3.6  PDB: F:95-124       Exon 3.7  PDB: F:125-162 (gaps)        Transcript 3
                 1j1d F  37 KKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGK----------ISADAMMQALLGAR 162
                                    46        56        66        76        86        96       106       116       126       136 |       -  |    156      
                                                                                                                               138        149             

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 6)

Asymmetric Unit

(-) CATH Domains  (2, 8)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J1D)

(-) Gene Ontology  (51, 76)

Asymmetric Unit(hide GO term definitions)
Chain A,D   (TNNC1_HUMAN | P63316)
molecular function
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0048306    calcium-dependent protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0031013    troponin I binding    Interacting selectively and non-covalently with troponin I, the inhibitory subunit of the troponin complex.
    GO:0031014    troponin T binding    Interacting selectively and non-covalently with troponin T, the tropomyosin-binding subunit of the troponin complex.
biological process
    GO:0060048    cardiac muscle contraction    Muscle contraction of cardiac muscle tissue.
    GO:0002086    diaphragm contraction    A process in which force is generated within involuntary skeletal muscle tissue, resulting in a change in muscle geometry. This process occurs in the diaphragm. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The diaphragm is a striated muscle that is necessary for the process of respiratory gaseous exchange.
    GO:0030049    muscle filament sliding    The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated.
    GO:0043462    regulation of ATPase activity    Any process that modulates the rate of ATP hydrolysis by an ATPase.
    GO:0006937    regulation of muscle contraction    Any process that modulates the frequency, rate or extent of muscle contraction.
    GO:0032972    regulation of muscle filament sliding speed    Any process that modulates the velocity of muscle filament sliding.
    GO:0010038    response to metal ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
    GO:0014883    transition between fast and slow fiber    The process of conversion of fast-contracting muscle fibers to a slower character. This may involve slowing of contractile rate, slow myosin gene induction, increase in oxidative metabolic properties, altered electrophysiology and altered innervation. This process also regulates skeletal muscle adapatation.
    GO:0055010    ventricular cardiac muscle tissue morphogenesis    The process in which the anatomical structures of cardiac ventricle muscle is generated and organized.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0043292    contractile fiber    Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005861    troponin complex    A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction.

Chain B,E   (TNNT2_HUMAN | P45379)
molecular function
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0030674    protein binding, bridging    The binding activity of a molecule that brings together two or more protein molecules, or a protein and another macromolecule or complex, through a selective, non-covalent, often stoichiometric interaction, permitting those molecules to function in a coordinated way.
    GO:0005523    tropomyosin binding    Interacting selectively and non-covalently with tropomyosin, a protein associated with actin filaments both in cytoplasm and, in association with troponin, in the thin filament of striated muscle.
    GO:0030172    troponin C binding    Interacting selectively and non-covalently with troponin C, the calcium-binding subunit of the troponin complex.
    GO:0031013    troponin I binding    Interacting selectively and non-covalently with troponin I, the inhibitory subunit of the troponin complex.
biological process
    GO:0051764    actin crosslink formation    The process in which two or more actin filaments are connected together by proteins that act as crosslinks between the filaments. The crosslinked filaments may be on the same or differing axes.
    GO:0060048    cardiac muscle contraction    Muscle contraction of cardiac muscle tissue.
    GO:0006936    muscle contraction    A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis.
    GO:0030049    muscle filament sliding    The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated.
    GO:0032780    negative regulation of ATPase activity    Any process that stops or reduces the rate of ATP hydrolysis by an ATPase.
    GO:0032781    positive regulation of ATPase activity    Any process that activates or increases the rate of ATP hydrolysis by an ATPase.
    GO:0051291    protein heterooligomerization    The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of component monomers that are not all identical. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer.
    GO:0008016    regulation of heart contraction    Any process that modulates the frequency, rate or extent of heart contraction. Heart contraction is the process in which the heart decreases in volume in a characteristic way to propel blood through the body.
    GO:0006937    regulation of muscle contraction    Any process that modulates the frequency, rate or extent of muscle contraction.
    GO:0032972    regulation of muscle filament sliding speed    Any process that modulates the velocity of muscle filament sliding.
    GO:0051592    response to calcium ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus.
    GO:0055010    ventricular cardiac muscle tissue morphogenesis    The process in which the anatomical structures of cardiac ventricle muscle is generated and organized.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030016    myofibril    The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism.
    GO:0030017    sarcomere    The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
    GO:0005865    striated muscle thin filament    Filaments formed of actin and associated proteins; attached to Z discs at either end of sarcomeres in myofibrils.
    GO:0005861    troponin complex    A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction.

Chain C,F   (TNNI3_HUMAN | P19429)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0019855    calcium channel inhibitor activity    Stops, prevents, or reduces the activity of a calcium channel.
    GO:0048306    calcium-dependent protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules), in the presence of calcium.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0030172    troponin C binding    Interacting selectively and non-covalently with troponin C, the calcium-binding subunit of the troponin complex.
    GO:0031014    troponin T binding    Interacting selectively and non-covalently with troponin T, the tropomyosin-binding subunit of the troponin complex.
biological process
    GO:0060048    cardiac muscle contraction    Muscle contraction of cardiac muscle tissue.
    GO:0006874    cellular calcium ion homeostasis    Any process involved in the maintenance of an internal steady state of calcium ions at the level of a cell.
    GO:0060047    heart contraction    The multicellular organismal process in which the heart decreases in volume in a characteristic way to propel blood through the body.
    GO:0007507    heart development    The process whose specific outcome is the progression of the heart over time, from its formation to the mature structure. The heart is a hollow, muscular organ, which, by contracting rhythmically, keeps up the circulation of the blood.
    GO:0030049    muscle filament sliding    The sliding of actin thin filaments and myosin thick filaments past each other in muscle contraction. This involves a process of interaction of myosin located on a thick filament with actin located on a thin filament. During this process ATP is split and forces are generated.
    GO:0032780    negative regulation of ATPase activity    Any process that stops or reduces the rate of ATP hydrolysis by an ATPase.
    GO:1903779    regulation of cardiac conduction    Any process that modulates the frequency, rate or extent of cardiac conduction.
    GO:0006937    regulation of muscle contraction    Any process that modulates the frequency, rate or extent of muscle contraction.
    GO:0006940    regulation of smooth muscle contraction    Any process that modulates the frequency, rate or extent of smooth muscle contraction.
    GO:0001980    regulation of systemic arterial blood pressure by ischemic conditions    The process that modulates blood pressure by the detection of carbon dioxide levels in the brain stem. Increased levels activate the sympathetic vasoconstrictor mechanism increasing the force with which blood flows through the circulatory system.
    GO:0003009    skeletal muscle contraction    A process in which force is generated within skeletal muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. In the skeletal muscle, the muscle contraction takes advantage of an ordered sarcomeric structure and in most cases it is under voluntary control.
    GO:0006941    striated muscle contraction    A process in which force is generated within striated muscle tissue, resulting in the shortening of the muscle. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. Striated muscle is a type of muscle in which the repeating units (sarcomeres) of the contractile myofibrils are arranged in registry throughout the cell, resulting in transverse or oblique striations observable at the level of the light microscope.
    GO:0001570    vasculogenesis    The differentiation of endothelial cells from progenitor cells during blood vessel development, and the de novo formation of blood vessels and tubes.
    GO:0055010    ventricular cardiac muscle tissue morphogenesis    The process in which the anatomical structures of cardiac ventricle muscle is generated and organized.
cellular component
    GO:0043292    contractile fiber    Fibers, composed of actin, myosin, and associated proteins, found in cells of smooth or striated muscle.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030016    myofibril    The contractile element of skeletal and cardiac muscle; a long, highly organized bundle of actin, myosin, and other proteins that contracts by a sliding filament mechanism.
    GO:0030017    sarcomere    The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.
    GO:0005861    troponin complex    A complex of accessory proteins (typically troponin T, troponin I and troponin C) found associated with actin in muscle thin filaments; involved in calcium regulation of muscle contraction.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TNNC1_HUMAN | P633161ap4 1ih0 1j1e 1lj6 1lxf 1mxl 1ozs 1spy 1wrk 1wrl 2jt0 2jt3 2jt8 2jtz 2jxl 2kdh 2kfx 2kgb 2krd 2l1r 2l98 2mkp 2mle 2mlf 2mzp 2n79 2n7l 3rv5 3sd6 3swb 4gje 4gjf 4gjg 4y99 5vln 5w88
        TNNI3_HUMAN | P194291j1e 1lxf 1mxl 1ozs 2kgb 2krd 2l1r 2mzp 2n7l 4y99 5vln 5w88
        TNNT2_HUMAN | P453791j1e 4y99

(-) Related Entries Specified in the PDB File

1j1e 52KD DOMAIN OF THE SAME PROTEIN AT 3.3 ANGSTROM