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1DM3
Asym. Unit
Info
Asym.Unit (256 KB)
Biol.Unit 1 (249 KB)
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(1)
Title
:
ACETYLATED BIOSYNTHETIC THIOLASE FROM ZOOGLOEA RAMIGERA IN COMPLEX WITH ACETYL-COA
Authors
:
Y. Modis, R. K. Wierenga
Date
:
13 Dec 99 (Deposition) - 29 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Biosynthetic Thiolase, Reaction Intermediate, Acetyl-Coa, Beta-Alpha Fold, Acetyl-Coa Acetyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Modis, R. K. Wierenga
Crystallographic Analysis Of The Reaction Pathway Of Zoogloea Ramigera Biosynthetic Thiolase.
J. Mol. Biol. V. 297 1171 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: ACETYL COENZYME *A (ACOa)
1b: ACETYL COENZYME *A (ACOb)
1c: ACETYL COENZYME *A (ACOc)
1d: ACETYL COENZYME *A (ACOd)
2a: S-ACETYL-CYSTEINE (SCYa)
2b: S-ACETYL-CYSTEINE (SCYb)
2c: S-ACETYL-CYSTEINE (SCYc)
2d: S-ACETYL-CYSTEINE (SCYd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACO
4
Ligand/Ion
ACETYL COENZYME *A
2
SCY
4
Mod. Amino Acid
S-ACETYL-CYSTEINE
3
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:298 , ARG B:302 , HOH B:983 , HOH B:1029
BINDING SITE FOR RESIDUE SO4 B 807
02
AC2
SOFTWARE
SER A:260 , GLU A:263 , ARG A:266
BINDING SITE FOR RESIDUE SO4 A 808
03
AC3
SOFTWARE
SER B:260 , GLU B:263 , ARG B:266 , HOH B:991
BINDING SITE FOR RESIDUE SO4 B 809
04
AC4
SOFTWARE
LYS A:298 , ARG A:302 , HOH A:966 , HOH A:1088
BINDING SITE FOR RESIDUE SO4 A 810
05
AC5
SOFTWARE
ARG A:41 , ILE A:199 , VAL A:200 , HOH A:968 , HOH A:1063 , HOH A:1108
BINDING SITE FOR RESIDUE SO4 A 811
06
AC6
SOFTWARE
ARG B:41 , ILE B:199 , VAL B:200 , HOH B:984 , HOH B:1052 , HOH B:1054
BINDING SITE FOR RESIDUE SO4 B 812
07
AC7
SOFTWARE
SCY A:89 , LEU A:148 , HIS A:156 , MET A:157 , ARG A:220 , SER A:227 , MET A:228 , ALA A:243 , GLY A:244 , SER A:247 , GLY A:248 , MET A:288 , ALA A:318 , PHE A:319 , HIS A:348 , CYS A:378 , HOH A:846 , HOH A:879 , HOH A:902 , HOH A:908 , HOH A:936 , HOH A:949 , HOH A:976 , HOH A:978 , HOH A:1001 , HOH A:1109 , MET D:134
BINDING SITE FOR RESIDUE ACO A 813
08
AC8
SOFTWARE
SCY B:89 , LEU B:148 , HIS B:156 , MET B:157 , ARG B:220 , SER B:227 , MET B:228 , ALA B:243 , GLY B:244 , SER B:247 , GLY B:248 , MET B:288 , ALA B:318 , PHE B:319 , HIS B:348 , CYS B:378 , ILE B:379 , GLY B:380 , HOH B:829 , HOH B:854 , HOH B:857 , HOH B:880 , HOH B:896 , HOH B:1022 , HOH B:1096 , MET C:134
BINDING SITE FOR RESIDUE ACO B 814
09
AC9
SOFTWARE
SCY C:89 , LEU C:148 , HIS C:156 , MET C:157 , ARG C:220 , SER C:227 , MET C:228 , PHE C:235 , ALA C:243 , GLY C:244 , SER C:247 , GLY C:248 , MET C:288 , ALA C:318 , PHE C:319 , HIS C:348 , CYS C:378 , ILE C:379 , HOH C:881 , HOH C:908
BINDING SITE FOR RESIDUE ACO C 815
10
BC1
SOFTWARE
SCY D:89 , LEU D:148 , HIS D:156 , MET D:157 , GLN D:183 , ARG D:220 , MET D:228 , PHE D:235 , ALA D:243 , GLY D:244 , SER D:247 , GLY D:248 , LEU D:249 , MET D:288 , ALA D:318 , PHE D:319 , HIS D:348 , CYS D:378 , ILE D:379 , GLY D:380 , HOH D:845 , HOH D:855
BINDING SITE FOR RESIDUE ACO D 816
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: THIOLASE_1 (A:85-103,B:85-103,C:85-103,D:85-10...)
2: THIOLASE_2 (A:338-354,B:338-354,C:338-354,D:33...)
3: THIOLASE_3 (A:373-386,B:373-386,C:373-386,D:37...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOLASE_1
PS00098
Thiolases acyl-enzyme intermediate signature.
THIL_ZOORA
85-103
4
A:85-103
B:85-103
C:85-103
D:85-103
2
THIOLASE_2
PS00737
Thiolases signature 2.
THIL_ZOORA
338-354
4
A:338-354
B:338-354
C:338-354
D:338-354
3
THIOLASE_3
PS00099
Thiolases active site.
THIL_ZOORA
373-386
4
A:373-386
B:373-386
C:373-386
D:373-386
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1dm3a1 (A:4-268)
1b: SCOP_d1dm3a2 (A:269-392)
1c: SCOP_d1dm3b1 (B:4-268)
1d: SCOP_d1dm3b2 (B:269-392)
1e: SCOP_d1dm3c1 (C:4-268)
1f: SCOP_d1dm3c2 (C:269-392)
1g: SCOP_d1dm3d1 (D:4-268)
1h: SCOP_d1dm3d2 (D:269-392)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Thiolase-related
(67)
Protein domain
:
Biosynthetic thiolase
(16)
Zoogloea ramigera [TaxId: 350]
(16)
1a
d1dm3a1
A:4-268
1b
d1dm3a2
A:269-392
1c
d1dm3b1
B:4-268
1d
d1dm3b2
B:269-392
1e
d1dm3c1
C:4-268
1f
d1dm3c2
C:269-392
1g
d1dm3d1
D:4-268
1h
d1dm3d2
D:269-392
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1dm3A01 (A:4-124,A:194-275)
1b: CATH_1dm3C01 (C:4-124,C:194-275)
1c: CATH_1dm3D01 (D:4-124,D:194-275)
1d: CATH_1dm3A02 (A:152-193,A:276-389)
1e: CATH_1dm3B02 (B:152-193,B:276-389)
1f: CATH_1dm3C02 (C:152-193,C:276-389)
1g: CATH_1dm3D02 (D:152-193,D:276-389)
1h: CATH_1dm3B01 (B:4-124,B:194-275)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Zoogloea ramigera. Organism_taxid: 350.
(3)
1a
1dm3A01
A:4-124,A:194-275
1b
1dm3C01
C:4-124,C:194-275
1c
1dm3D01
D:4-124,D:194-275
1d
1dm3A02
A:152-193,A:276-389
1e
1dm3B02
B:152-193,B:276-389
1f
1dm3C02
C:152-193,C:276-389
1g
1dm3D02
D:152-193,D:276-389
1h
1dm3B01
B:4-124,B:194-275
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Pfam Domains
(0, 0)
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