Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 2c - Page 3:

Structures for which the helical axis is best described by a circular line (arc).
Sigma2 of a circular line (arc) is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the goodness of fit sigma2(circular line) (s(2)).

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Number of structures: 99 (this pages) / 295 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
2dau	------	E   |    H   |    B	12	nuc	NMR	circular line	0.186	169
						single-kink line	0.206		19			2	10
						straight line	0.294
434d	ar0009	E   |    H   |    B	7	nuc	diff	circular line	0.186	37
						straight line	0.374
1d49	bdj031	E   |    H   |    B	10	nuc	diff	circular line	0.188	127
						single-kink line	0.195		8			5	5
						straight line	0.291
144d	gdlb24	E   |    H   |    B	12	nuc	diff	circular line	0.189	53
						single-kink line	0.291		22			6	6
1dl4	------	E   |    H   |    B	11	nuc	NMR	circular line	0.189	139
						single-kink line	0.217		10			6	5
						straight line	0.352
1jkr	pd0237	E   |    H   |    B	12	prot-nuc	diff	circular line	0.189	67
						single-kink line	0.217		17			6	6
1d91	adh018	E   |    H   |    B	8	nuc	diff	circular line	0.190	31
						single-kink line	0.217		24			4	4
9icv	pde0111	E   |    H   |    B	7	prot-nuc	diff	circular line	0.190	74
						straight line	0.228
1hry	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.196	80
						straight line	0.341
1s9m	------	E   |    H   |    B	8	prot-nuc	model	circular line	0.196	80
						straight line	0.340
1sx9	------	E   |    H   |    B	8	prot-nuc	model	circular line	0.196	80
						straight line	0.340
1jj6	pd0228	E   |    H   |    B	12	prot-nuc	diff	circular line	0.202	77
						single-kink line	0.319		16			5	7
1bg1	pd0028	E   |    H   |    B	17	prot-nuc	diff	circular line	0.203	64
						double-kink line	0.284		16	16	-11	6	5	6
						single-kink line	0.356		25			8	9
1by4	pd0071	E   |    H   |    B	15	prot-nuc	diff	circular line	0.205	424
						single-kink line	0.213		6			11	4
						straight line	0.239
						double-kink line	0.349		6	9	-165	7	2	6
1a1l	pdt061	E   |    H   |    B	10	prot-nuc	diff	circular line	0.208	105
						single-kink line	0.211		11			6	4
						straight line	0.346
1m97	------	E   |    H   |    B	9	prot-nuc	model	circular line	0.208	59
						single-kink line	0.400		14			4	5
1l3t	pd0301	E   |    H   |    B	10	prot-nuc	diff	circular line	0.209	114
						single-kink line	0.288		8			5	5
						straight line	0.312
8icx	pde085	E   |    H   |    B	7	prot-nuc	diff	circular line	0.209	78
						straight line	0.213
1d42	------	E   |    H   |    B	8	nuc	NMR	circular line	0.210	64
						straight line	0.305
369d	adh0103	E   |    H   |    B	8	nuc	diff	circular line	0.210	71
						single-kink line	0.212		13			5	3
						straight line	0.243
1a3q	pdr032	E   |    H   |    B	11	prot-nuc	diff	circular line	0.211	69
						single-kink line	0.222		16			6	5
1lrr	pd0315	E   |    H   |    B	12	prot-nuc	diff	circular line	0.212	294
						straight line	0.223
						single-kink line	0.236		4			6	6
1n56	pd0362	E   |    H   |    B	12	prot-nuc	diff	circular line	0.213	88
						single-kink line	0.334		13			6	6
1iu3	pd0297	E   |    H   |    B	9	prot-nuc	diff	circular line	0.217	105
						straight line	0.306
						single-kink line	0.359		8			5	4
1nne	pd0388	E   |    H   |    B	11	prot-nuc	diff	circular line	0.218	90
						single-kink line	0.261		12			6	5
1jkp	pd0235	E   |    H   |    B	12	prot-nuc	diff	circular line	0.223	70
						single-kink line	0.261		16			6	6
1qrh	pd0062	E   |    H   |    B	12	prot-nuc	diff	circular line	0.223	222
						single-kink line	0.254		6			4	7
						straight line	0.302
1rvh	------	E   |    H   |    B	12	nuc	NMR	circular line	0.224	57
						single-kink line	0.281		21			6	6
160d	adj049	E   |    H   |    B	10	nuc	diff	circular line	0.228	32
						single-kink line	0.270		27			5	5
216d	ghhb34	E   |    H   |    B	8	nuc	diff	circular line	0.230	74
						straight line	0.412
316d	ddh071	E   |    H   |    B	8	nuc	diff	circular line	0.231	96
						straight line	0.370
1kkw	------	E   |    H   |    B	10	nuc	NMR	circular line	0.232	142
						straight line	0.245
						single-kink line	0.291		9			3	7
1njy	pd0374	E   |    H   |    B	11	prot-nuc	diff	circular line	0.232	88
						single-kink line	0.249		13			5	6
3bdp	pde0132	E   |    H   |    B	10	prot-nuc	diff	circular line	0.235	81
						single-kink line	0.344		12			4	6
1k7a	pd0261	E   |    H   |    B	13	prot-nuc	diff	circular line	0.237	78
						single-kink line	0.292		16			7	6
						double-kink line	0.327		10	14	38	6	4	3
1dne	gdl004	E   |    H   |    B	12	nuc	diff	circular line	0.243	100
						single-kink line	0.268		13			5	7
1dsm	------	E   |    H   |    B	11	nuc	NMR	circular line	0.244	72
						single-kink line	0.422		13			5	6
1d90	adhb17	E   |    H   |    B	8	nuc	diff	circular line	0.247	31
						single-kink line	0.427		24			4	4
1jkq	pd0236	E   |    H   |    B	12	prot-nuc	diff	circular line	0.258	116
						single-kink line	0.310		10			6	6
1qes	------	E   |    H   |    B	8	nuc	NMR	circular line	0.261	46
						straight line	0.319
1cyz	------	E   |    H   |    B	10	nuc	NMR	circular line	0.264	92
						single-kink line	0.383		11			4	6
8ici	pde070	E   |    H   |    B	7	prot-nuc	diff	circular line	0.265	64
						straight line	0.306
1m77	ad0026	E   |    H   |    B	10	nuc	diff	circular line	0.271	50
						single-kink line	0.446		17			4	6
161d	ahj052	E   |    H   |    B	10	nuc	diff	circular line	0.273	30
						single-kink line	0.354		29			5	5
1jgg	pdt031	E   |    H   |    B	10	prot-nuc	diff	circular line	0.276	131
						single-kink line	0.286		9			4	6
						straight line	0.356
1nke	pd0385	E   |    H   |    B	11	prot-nuc	diff	circular line	0.278	58
						single-kink line	0.339		19			5	6
1jko	pd0234	E   |    H   |    B	12	prot-nuc	diff	circular line	0.282	69
						single-kink line	0.298		18			5	7
240d	adj069	E   |    H   |    B	10	nuc	diff	circular line	0.285	26
						single-kink line	0.328		36			5	5
1d92	adh019	E   |    H   |    B	8	nuc	diff	circular line	0.291	24
						single-kink line	0.457		30			4	4
1hjb	pd0204	E   |    H   |    B	25	prot-nuc	diff	circular line	0.291	99
						double-kink line	0.295		21	10	13	9	8	8
1hlo	pdt042	E   |    H   |    B	11	prot-nuc	diff	circular line	0.292	52
						single-kink line	0.357		22			6	5
1d23	bdj025	E   |    H   |    B	10	nuc	diff	circular line	0.296	138
						single-kink line	0.315		8			5	5
						straight line	0.345
193d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.297	79
						single-kink line	0.374		12			4	4
1dcr	bd0027	E   |    H   |    B	9	nuc	diff	circular line	0.301	46
						single-kink line	0.316		22			4	5
1zqm	pde039	E   |    H   |    B	7	prot-nuc	diff	circular line	0.305	67
						straight line	0.306
8ick	pde072	E   |    H   |    B	7	prot-nuc	diff	circular line	0.315	63
						straight line	0.328
1bdt	pd0035	E   |    H   |    B	21	prot-nuc	diff	circular line	0.317	77
						double-kink line	0.433		15	17	-13	7	5	9
1fiu	pd0177	E   |    H   |    B	10	prot-nuc	diff	circular line	0.326	151
						single-kink line	0.341		9			6	3
						straight line	0.364
1cez	pd0086	E   |    H   |    B	13	prot-nuc	diff	circular line	0.327	92
						double-kink line	0.369		12	14	76	5	5	3
						single-kink line	0.431		14			6	7
1l3v	pd0303	E   |    H   |    B	15	prot-nuc	diff	circular line	0.331	73
						single-kink line	0.373		21			6	9
						double-kink line	0.374		20	14	75	6	7	2
323d	adjb84	E   |    H   |    B	10	nuc	diff	circular line	0.332	30
						single-kink line	0.345		29			5	5
204d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.344	75
						straight line	0.424
324d	adjb85	E   |    H   |    B	10	nuc	diff	circular line	0.344	20
						single-kink line	0.487		44			5	5
2d25	bdjb27	E   |    H   |    B	10	nuc	diff	circular line	0.346	150
						straight line	0.372
						single-kink line	0.422		10			7	3
2bpg	pde012	E   |    H   |    B	7	prot-nuc	diff	circular line	0.350	44
						straight line	0.523
319d	adjb80	E   |    H   |    B	10	nuc	diff	circular line	0.358	32
						single-kink line	0.376		27			5	5
1pyi	pdt017	E   |    H   |    B	14	prot-nuc	diff	circular line	0.360	277
						single-kink line	0.385		6			9	5
						double-kink line	0.402		6	14	-122	5	6	2
						straight line	0.403
1zqh	pde034	E   |    H   |    B	7	prot-nuc	diff	circular line	0.364	63
						straight line	0.364
202d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.366	115
						straight line	0.366
1o9m	------	E   |    H   |    B	8	nuc	diff	circular line	0.367	40
						straight line	0.556
1gxp	------	E   |    H   |    B	22	prot-nuc	diff	circular line	0.370	103
						double-kink line	0.404		18	11	-16	7	8	7
1bp7	pd0026	E   |    H   |    B	24	prot-nuc	diff	circular line	0.375	78
						double-kink line	0.529		18	22	-15	7	8	9
1dnx	ah0009	E   |    H   |    B	10	nuc	diff	circular line	0.376	21
						single-kink line	0.574		39			5	5
1zqe	pde031	E   |    H   |    B	7	prot-nuc	diff	circular line	0.391	55
						straight line	0.456
1bdv	pd0025	E   |    H   |    B	21	prot-nuc	diff	circular line	0.392	84
						double-kink line	0.499		15	15	-50	8	4	9
171d	------	E   |    H   |    B	12	nuc	NMR	circular line	0.398	49
						single-kink line	0.479		25			6	6
1qai	pd0126	E   |    H   |    B	8	prot-nuc	diff	circular line	0.398	43
						single-kink line	0.511		20			3	5
1bps	------	E   |    H   |    B	9	nuc	NMR	circular line	0.410	34
						single-kink line	0.487		30			5	4
1d87	ahj043	E   |    H   |    B	10	nuc	diff	circular line	0.411	20
						single-kink line	0.572		48			5	5
100d	ahj060	E   |    H   |    B	10	nuc	diff	circular line	0.416	24
						single-kink line	0.603		34			5	5
1guc	------	E   |    H   |    B	8	nuc	NMR	circular line	0.426	23
						single-kink line	0.499		29			4	4
175d	------	E   |    H   |    B	10	nuc	NMR	circular line	0.441	34
						single-kink line	0.464		29			5	5
1tn9	------	E   |    H   |    B	13	prot-nuc	NMR	circular line	0.446	59
						double-kink line	0.547		13	24	43	3	6	4
326d	adjb87	E   |    H   |    B	10	nuc	diff	circular line	0.466	25
						single-kink line	0.472		35			5	5
1mow	pd0342	E   |    H   |    B	22	prot-nuc	diff	circular line	0.493	58
						double-kink line	0.598		13	33	20	6	6	10
1huo	pd0196	E   |    H   |    B	7	prot-nuc	diff	circular line	0.508	41
						straight line	0.661
1o3s	pd0400	E   |    H   |    B	11	prot-nuc	diff	circular line	0.515	55
						single-kink line	0.558		20			6	5
1l3m	------	E   |    H   |    B	12	nuc	NMR	circular line	0.516	41
						single-kink line	0.587		33			8	4
485d	ar0019	E   |    H   |    B	8	nuc	diff	circular line	0.526	24
						single-kink line	0.534		30			4	4
1dsa	------	E   |    H   |    B	11	nuc	NMR	circular line	0.550	52
						single-kink line	0.557		21			6	5
1srs	pdt021	E   |    H   |    B	18	prot-nuc	diff	circular line	0.554	31
						double-kink line	0.603		39	41	-20	5	7	6
119d	bdl042	E   |    H   |    B	12	nuc	diff	circular line	0.585	101
						single-kink line	0.647		12			6	6
107d	------	E   |    H   |    B	7	nuc	NMR	circular line	0.608	41
						straight line	0.626
1zqq	pde043	E   |    H   |    B	7	prot-nuc	diff	circular line	0.609	40
						straight line	0.746
170d	------	E   |    H   |    B	12	nuc	NMR	circular line	0.639	110
						single-kink line	0.839		12			7	5
1vol	pdt032	E   |    H   |    B	16	prot-nuc	diff	circular line	0.703	23
						double-kink line	0.733		41	46	34	6	5	5
1f4s	------	E   |    H   |    B	10	prot-nuc	NMR	circular line	0.769	56
						single-kink line	0.809		21			6	4
3bam	pd0031	E   |    H   |    B	10	prot-nuc	diff	circular line	1.146	60
						single-kink line	1.321		18			4	6
1fyy	------	E   |    H   |    B	12	nuc	NMR	circular line	1.380	37
						single-kink line	1.548		39			6	6

Abbreviations