Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 2c - Page 2:

Structures for which the helical axis is best described by a circular line (arc).
Sigma2 of a circular line (arc) is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the goodness of fit sigma2(circular line) (s(2)).

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Number of structures: 98 (this pages) / 295 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
372d	adh0106	E   |    H   |    B	8	nuc	diff	circular line	0.088	79
						single-kink line	0.176		9			4	4
						straight line	0.199
1d79	adh039	E   |    H   |    B	8	nuc	diff	circular line	0.089	53
						single-kink line	0.150		13			4	4
1mse	------	E   |    H   |    B	11	prot-nuc	NMR	circular line	0.089	322
						single-kink line	0.090		5			7	3
						straight line	0.092
1g3v	bd0042	E   |    H   |    B	8	nuc	diff	circular line	0.090	128
						straight line	0.115
						single-kink line	0.187		6			3	5
286d	bdjb77	E   |    H   |    B	10	nuc	diff	circular line	0.091	192
						single-kink line	0.092		6			5	5
						straight line	0.132
8ict	pde081	E   |    H   |    B	7	prot-nuc	diff	circular line	0.092	103
						straight line	0.111
1bc8	pd0020	E   |    H   |    B	9	prot-nuc	diff	circular line	0.094	131
						single-kink line	0.118		8			6	3
						straight line	0.150
1g8u	bd0045	E   |    H   |    B	12	nuc	diff	circular line	0.094	97
						single-kink line	0.165		14			4	8
1lex	gdl037	E   |    H   |    B	12	nuc	diff	circular line	0.094	129
						single-kink line	0.143		10			5	7
455d	bd0008	E   |    H   |    B	12	nuc	diff	circular line	0.094	84
						single-kink line	0.132		15			5	7
368d	adh0102	E   |    H   |    B	8	nuc	diff	circular line	0.095	41
						single-kink line	0.183		16			4	4
195d	gdl030	E   |    H   |    B	12	nuc	diff	circular line	0.096	83
						single-kink line	0.126		15			6	6
1ikk	bd0051	E   |    H   |    B	10	nuc	diff	circular line	0.097	197
						single-kink line	0.112		5			4	5
						straight line	0.134
3bna	bdlb03	E   |    H   |    B	12	nuc	diff	circular line	0.098	189
						single-kink line	0.100		8			4	8
						straight line	0.225
1ley	gdl038	E   |    H   |    B	12	nuc	diff	circular line	0.099	116
						single-kink line	0.156		11			5	7
8icf	pde067	E   |    H   |    B	7	prot-nuc	diff	circular line	0.099	100
						straight line	0.126
1d63	gdl016	E   |    H   |    B	12	nuc	diff	circular line	0.100	136
						single-kink line	0.132		9			5	7
1g8v	bd0046	E   |    H   |    B	12	nuc	diff	circular line	0.100	93
						single-kink line	0.224		14			4	8
1esg	pd0139	E   |    H   |    B	8	prot-nuc	diff	circular line	0.102	48
						single-kink line	0.202		17			4	4
1gat	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.102	117
						single-kink line	0.127		7			5	3
						straight line	0.140
1nkc	pd0384	E   |    H   |    B	15	prot-nuc	diff	circular line	0.104	82
						double-kink line	0.123		13	14	28	4	6	5
						single-kink line	0.280		17			8	7
9ice	pde094	E   |    H   |    B	7	prot-nuc	diff	circular line	0.104	101
						straight line	0.118
1hhx	------	E   |    H   |    B	9	nuc	NMR	circular line	0.105	82
						single-kink line	0.115		10			4	5
						straight line	0.178
1mjp	pd0247	E   |    H   |    B	9	prot-nuc	diff	circular line	0.105	64
						single-kink line	0.156		14			5	4
458d	bd0011	E   |    H   |    B	12	nuc	diff	circular line	0.106	117
						single-kink line	0.121		12			4	8
1rvi	------	E   |    H   |    B	12	nuc	NMR	circular line	0.107	199
						single-kink line	0.157		7			4	8
						straight line	0.215
1bdn	bdl015	E   |    H   |    B	12	nuc	diff	circular line	0.108	127
						single-kink line	0.183		9			5	7
1cs2	------	E   |    H   |    B	12	nuc	NMR	circular line	0.110	153
						single-kink line	0.122		8			7	5
						straight line	0.279
1p7d	pd0428	E   |    H   |    B	13	prot-nuc	diff	circular line	0.110	50
						double-kink line	0.182		15	15	16	5	4	4
						single-kink line	0.198		25			7	6
1qph	ad0005	E   |    H   |    B	12	nuc	diff	circular line	0.110	32
						single-kink line	0.168		33			6	6
287d	bdl078	E   |    H   |    B	12	nuc	diff	circular line	0.110	113
						single-kink line	0.192		10			5	7
104d	------	E   |    H   |    B	12	nuc	NMR	circular line	0.111	59
						single-kink line	0.250		15			5	7
188d	adh057	E   |    H   |    B	8	nuc	diff	circular line	0.111	91
						straight line	0.138
						single-kink line	0.195		8			4	4
8icg	pde068	E   |    H   |    B	7	prot-nuc	diff	circular line	0.111	83
						straight line	0.169
117d	adl046	E   |    H   |    B	12	nuc	diff	circular line	0.113	45
						single-kink line	0.176		22			6	6
1d93	adh020	E   |    H   |    B	8	nuc	diff	circular line	0.113	67
						single-kink line	0.252		11			4	4
						straight line	0.291
1j47	------	E   |    H   |    B	14	prot-nuc	NMR	circular line	0.113	54
						double-kink line	0.158		12	21	-6	5	4	5
						single-kink line	0.202		28			7	7
1n37	------	E   |    H   |    B	8	nuc	NMR	circular line	0.115	74
						single-kink line	0.194		13			4	4
1nk8	pd0381	E   |    H   |    B	11	prot-nuc	diff	circular line	0.115	143
						single-kink line	0.129		8			5	6
						straight line	0.233
142d	------	E   |    H   |    B	13	nuc	NMR	circular line	0.116	36
						double-kink line	0.152		17	19	-22	5	3	5
						single-kink line	0.167		32			6	7
432d	dd0002	E   |    H   |    B	8	nuc	diff	circular line	0.116	140
						straight line	0.128
						single-kink line	0.211		7			5	3
1hrz	------	E   |    H   |    B	8	prot-nuc	NMR	circular line	0.118	82
						straight line	0.291
168d	ahjs55	E   |    H   |    B	10	nuc	diff	circular line	0.119	40
						single-kink line	0.185		20			5	5
1d13	adj022	E   |    H   |    B	10	nuc	diff	circular line	0.120	27
						single-kink line	0.154		32			5	5
121d	gdl014	E   |    H   |    B	12	nuc	diff	circular line	0.121	261
						single-kink line	0.139		5			4	8
						straight line	0.166
1dnz	ad0006	E   |    H   |    B	10	nuc	diff	circular line	0.121	36
						single-kink line	0.125		23			5	5
220d	adj066	E   |    H   |    B	10	nuc	diff	circular line	0.121	28
						single-kink line	0.154		31			5	5
7gat	------	E   |    H   |    B	13	prot-nuc	NMR	circular line	0.121	64
						double-kink line	0.128		13	15	-33	4	4	5
						single-kink line	0.251		22			7	6
1dvl	dd0024	E   |    H   |    B	10	nuc	diff	circular line	0.126	191
						single-kink line	0.145		6			5	5
						straight line	0.163
1g7z	------	E   |    H   |    B	8	nuc	NMR	circular line	0.126	108
						straight line	0.134
						single-kink line	0.237		7			4	4
1ilc	bd0052	E   |    H   |    B	12	nuc	diff	circular line	0.127	152
						single-kink line	0.151		8			5	7
						straight line	0.303
1qcu	ar0020	E   |    H   |    B	11	nuc	diff	circular line	0.127	70
						single-kink line	0.155		12			6	5
1jx4	pd0251	E   |    H   |    B	13	prot-nuc	diff	circular line	0.129	108
						single-kink line	0.146		12			6	7
						double-kink line	0.190		10	8	-89	5	2	6
9icb	pde092	E   |    H   |    B	7	prot-nuc	diff	circular line	0.129	81
						straight line	0.188
9icc	pde093	E   |    H   |    B	7	prot-nuc	diff	circular line	0.129	66
						straight line	0.245
1cvy	dd0021	E   |    H   |    B	10	nuc	diff	circular line	0.136	188
						single-kink line	0.153		6			5	5
						straight line	0.183
1mjm	pd0245	E   |    H   |    B	10	prot-nuc	diff	circular line	0.136	67
						single-kink line	0.151		15			5	5
199d	------	E   |    H   |    B	9	nuc	NMR	circular line	0.137	75
						single-kink line	0.139		10			5	4
						straight line	0.231
1jk1	pd0230	E   |    H   |    B	10	prot-nuc	diff	circular line	0.137	200
						straight line	0.154
						single-kink line	0.157		5			5	5
1lcd	------	E   |    H   |    B	11	prot-nuc	NMR	circular line	0.137	43
						single-kink line	0.290		24			5	6
140d	------	E   |    H   |    B	13	nuc	NMR	circular line	0.138	35
						double-kink line	0.141		17	22	-22	5	3	5
						single-kink line	0.181		34			6	7
1gip	------	E   |    H   |    B	12	nuc	NMR	circular line	0.139	131
						single-kink line	0.143		9			6	6
1d68	------	E   |    H   |    B	10	nuc	NMR	circular line	0.140	173
						straight line	0.144
						single-kink line	0.161		5			5	5
1d77	bdlb40	E   |    H   |    B	12	nuc	diff	circular line	0.140	140
						single-kink line	0.157		10			4	8
1jj8	pd0229	E   |    H   |    B	12	prot-nuc	diff	circular line	0.141	117
						single-kink line	0.198		10			6	6
8bna	gdl006	E   |    H   |    B	12	nuc	diff	circular line	0.141	122
						single-kink line	0.159		10			5	7
9ich	pde097	E   |    H   |    B	7	prot-nuc	diff	circular line	0.141	64
						straight line	0.284
285d	bdlb76	E   |    H   |    B	12	nuc	diff	circular line	0.142	243
						single-kink line	0.185		6			4	8
						straight line	0.193
1b0s	------	E   |    H   |    B	10	nuc	NMR	circular line	0.144	64
						single-kink line	0.215		15			5	5
5bna	ddl017	E   |    H   |    B	12	nuc	diff	circular line	0.148	79
						single-kink line	0.299		14			6	6
214d	------	E   |    H   |    B	11	nuc	NMR	circular line	0.149	116
						single-kink line	0.153		9			6	5
						straight line	0.278
3ana	adh007	E   |    H   |    B	8	nuc	diff	circular line	0.149	79
						straight line	0.184
						single-kink line	0.203		11			5	3
1g2f	pd0187	E   |    H   |    B	15	prot-nuc	diff	circular line	0.150	154
						double-kink line	0.167		10	9	47	3	7	5
						single-kink line	0.205		10			9	6
298d	gdl044	E   |    H   |    B	12	nuc	diff	circular line	0.150	174
						single-kink line	0.153		9			4	8
						straight line	0.288
2dnd	gdl003	E   |    H   |    B	12	nuc	diff	circular line	0.151	121
						single-kink line	0.180		10			5	7
1dnk	pde005	E   |    H   |    B	7	prot-nuc	diff	circular line	0.153	58
						straight line	0.301
1odh	------	E   |    H   |    B	13	prot-nuc	diff	circular line	0.153	213
						single-kink line	0.166		6			6	7
						straight line	0.249
						double-kink line	0.300		7	10	-173	6	6	1
1b1f	------	E   |    H   |    B	10	prot-nuc	model	circular line	0.155	94
						single-kink line	0.178		10			5	5
1d3x	------	E   |    H   |    B	8	nuc	NMR	circular line	0.155	45
						single-kink line	0.351		17			4	4
1bc7	pd0027	E   |    H   |    B	11	prot-nuc	diff	circular line	0.159	188
						straight line	0.198
						single-kink line	0.201		6			7	4
1ea4	pd0479	E   |    H   |    B	20	prot-nuc	diff	circular line	0.159	70
						double-kink line	0.240		19	19	-14	7	7	6
1mq2	pd0343	E   |    H   |    B	10	prot-nuc	diff	circular line	0.160	115
						single-kink line	0.161		10			4	6
						straight line	0.301
1g2d	pd0186	E   |    H   |    B	15	prot-nuc	diff	circular line	0.161	149
						double-kink line	0.212		11	9	46	3	7	5
						single-kink line	0.262		9			7	8
249d	bdl070	E   |    H   |    B	11	nuc	diff	circular line	0.168	147
						single-kink line	0.222		7			5	6
						straight line	0.313
317d	adh078	E   |    H   |    B	8	nuc	diff	circular line	0.168	54
						single-kink line	0.307		13			4	4
464d	ar0014	E   |    H   |    B	7	nuc	diff	circular line	0.168	46
						straight line	0.269
407d	bdd002	E   |    H   |    B	10	nuc	diff	circular line	0.171	134
						single-kink line	0.173		8			5	5
						straight line	0.279
1nev	------	E   |    H   |    B	10	nuc	NMR	circular line	0.173	78
						single-kink line	0.224		13			5	5
1rmx	------	E   |    H   |    B	10	nuc	NMR	circular line	0.175	54
						single-kink line	0.201		17			5	5
398d	ahh0114	E   |    H   |    B	8	nuc	diff	circular line	0.179	33
						single-kink line	0.348		20			4	4
426d	bd0004	E   |    H   |    B	11	nuc	diff	circular line	0.181	70
						single-kink line	0.208		16			6	5
1a1h	pdt057	E   |    H   |    B	10	prot-nuc	diff	circular line	0.182	147
						single-kink line	0.193		8			6	4
						straight line	0.229
1d89	bdl047	E   |    H   |    B	12	nuc	diff	circular line	0.182	108
						single-kink line	0.203		14			8	4
1g3x	dd0037	E   |    H   |    B	12	prot-nuc	diff	circular line	0.182	166
						single-kink line	0.215		8			4	7
						straight line	0.321
1r3x	------	E   |    H   |    B	8	nuc	NMR	circular line	0.183	94
						straight line	0.220
						single-kink line	0.269		10			5	3
363d	adls105	E   |    H   |    B	12	nuc	diff	circular line	0.183	134
						single-kink line	0.198		9			8	4
						straight line	0.289
1iv6	------	E   |    H   |    B	13	prot-nuc	NMR	circular line	0.184	68
						double-kink line	0.201		17	13	-62	4	6	3
						single-kink line	0.244		17			6	7
6cro	pdr053	E   |    H   |    B	19	prot-nuc	diff	circular line	0.184	64
						double-kink line	0.231		23	20	4	6	7	6

Abbreviations