Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Table 2c - Page 1:

Structures for which the helical axis is best described by a circular line (arc).
Sigma2 of a circular line (arc) is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the goodness of fit sigma2(circular line) (s(2)).

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Number of structures: 98 (this pages) / 295 (total)

PDB	NDB	IMB Jena Image Library	bp	molecule type	method	model	s(2)	r	a/a1	a2	o	l1	l2	l3
1duf	------	E   |    H   |    B	12	nuc	NMR	circular line	0.006	97
						single-kink line	0.043		12			6	6
116d	adl045	E   |    H   |    B	12	nuc	diff	circular line	0.009	51
						single-kink line	0.083		19			6	6
1fym	pd0184	E   |    H   |    B	12	prot-nuc	diff	circular line	0.010	99
						single-kink line	0.053		11			5	7
1rxb	arh064	E   |    H   |    B	8	nuc	diff	circular line	0.015	126
						single-kink line	0.035		6			3	5
						straight line	0.050
259d	arh074	E   |    H   |    B	8	nuc	diff	circular line	0.016	135
						single-kink line	0.029		5			4	4
						straight line	0.044
1naj	------	E   |    H   |    B	12	nuc	NMR	circular line	0.019	163
						single-kink line	0.019		7			6	6
						straight line	0.177
1fzx	------	E   |    H   |    B	12	nuc	NMR	circular line	0.020	140
						single-kink line	0.056		7			6	6
						straight line	0.185
1fky	------	E   |    H   |    B	11	nuc	NMR	circular line	0.021	151
						single-kink line	0.033		7			5	6
						straight line	0.160
1fkz	------	E   |    H   |    B	11	nuc	NMR	circular line	0.021	179
						single-kink line	0.048		6			6	5
						straight line	0.117
1fyl	pd0183	E   |    H   |    B	12	prot-nuc	diff	circular line	0.021	114
						single-kink line	0.064		10			6	6
1bjd	------	E   |    H   |    B	12	nuc	NMR	circular line	0.024	184
						single-kink line	0.041		6			6	6
						straight line	0.126
1agh	------	E   |    H   |    B	11	nuc	NMR	circular line	0.025	187
						single-kink line	0.026		6			5	6
						straight line	0.105
1al5	------	E   |    H   |    B	12	nuc	NMR	circular line	0.027	53
						single-kink line	0.075		18			5	7
113d	bdl009	E   |    H   |    B	12	nuc	diff	circular line	0.032	125
						single-kink line	0.053		10			6	6
1bp8	------	E   |    H   |    B	8	nuc	NMR	circular line	0.035	44
						single-kink line	0.105		17			4	4
1d27	bdlb26	E   |    H   |    B	12	nuc	diff	circular line	0.036	141
						single-kink line	0.073		8			6	6
1gtc	------	E   |    H   |    B	8	nuc	NMR	circular line	0.036	42
						single-kink line	0.190		15			4	4
219d	------	E   |    H   |    B	10	nuc	NMR	circular line	0.037	96
						single-kink line	0.039		10			4	6
						straight line	0.169
2ezd	------	E   |    H   |    B	12	prot-nuc	NMR	circular line	0.038	128
						single-kink line	0.127		10			6	6
303d	gdl048	E   |    H   |    B	12	nuc	diff	circular line	0.038	122
						single-kink line	0.070		10			5	7
1d60	bdjb43	E   |    H   |    B	10	nuc	diff	circular line	0.039	340
						single-kink line	0.045		3			5	4
						straight line	0.049
431d	bd0006	E   |    H   |    B	8	nuc	diff	circular line	0.039	113
						single-kink line	0.080		7			4	4
						straight line	0.127
1k4t	pd0256	E   |    H   |    B	10	prot-nuc	diff	circular line	0.041	128
						single-kink line	0.044		8			5	5
						straight line	0.184
269d	gdlb43	E   |    H   |    B	12	nuc	diff	circular line	0.041	207
						single-kink line	0.059		6			5	7
						straight line	0.151
265d	bdlb72	E   |    H   |    B	12	nuc	diff	circular line	0.042	204
						single-kink line	0.069		5			6	6
						straight line	0.147
266d	bdlb73	E   |    H   |    B	12	nuc	diff	circular line	0.042	174
						single-kink line	0.058		7			6	6
						straight line	0.206
302d	gdl047	E   |    H   |    B	12	nuc	diff	circular line	0.042	127
						single-kink line	0.070		10			5	7
124d	------	E   |    H   |    B	8	nuc	NMR	circular line	0.043	119
						single-kink line	0.053		8			2	6
						straight line	0.056
270d	bdlb74	E   |    H   |    B	12	nuc	diff	circular line	0.046	147
						single-kink line	0.066		8			5	7
2eze	------	E   |    H   |    B	12	prot-nuc	NMR	circular line	0.048	137
						single-kink line	0.079		10			5	7
1g14	------	E   |    H   |    B	12	nuc	NMR	circular line	0.049	268
						single-kink line	0.063		4			7	5
						straight line	0.082
1edr	bd0031	E   |    H   |    B	12	nuc	diff	circular line	0.050	132
						single-kink line	0.089		9			5	7
243d	adh070	E   |    H   |    B	8	nuc	diff	circular line	0.050	113
						single-kink line	0.089		7			4	4
						straight line	0.105
477d	bd0019	E   |    H   |    B	10	nuc	diff	circular line	0.051	227
						single-kink line	0.067		5			4	6
						straight line	0.081
1dc0	bd0026	E   |    H   |    B	12	nuc	diff	circular line	0.052	80
						single-kink line	0.136		14			7	5
463d	bd0014	E   |    H   |    B	10	nuc	diff	circular line	0.052	245
						single-kink line	0.056		5			3	7
						straight line	0.075
271d	bdl075	E   |    H   |    B	12	nuc	diff	circular line	0.053	106
						single-kink line	0.098		11			5	7
281d	adh076	E   |    H   |    B	8	nuc	diff	circular line	0.053	57
						single-kink line	0.193		13			3	5
457d	bd0010	E   |    H   |    B	12	nuc	diff	circular line	0.054	162
						single-kink line	0.106		7			5	7
						straight line	0.236
459d	dd0014	E   |    H   |    B	12	nuc	diff	circular line	0.055	125
						single-kink line	0.076		10			5	7
456d	bd0009	E   |    H   |    B	12	nuc	diff	circular line	0.056	118
						single-kink line	0.089		10			5	7
1d65	bdl038	E   |    H   |    B	12	nuc	diff	circular line	0.057	172
						single-kink line	0.073		7			5	7
						straight line	0.226
1lp7	bd0057	E   |    H   |    B	12	nuc	diff	circular line	0.058	105
						single-kink line	0.117		11			5	7
1mis	------	E   |    H   |    B	8	nuc	NMR	circular line	0.058	83
						straight line	0.107
						single-kink line	0.138		9			3	5
1qc1	bd0015	E   |    H   |    B	10	nuc	diff	circular line	0.058	133
						single-kink line	0.093		7			5	5
						straight line	0.210
1d44	gdl011	E   |    H   |    B	12	nuc	diff	circular line	0.059	222
						single-kink line	0.094		5			7	5
						straight line	0.153
1d98	bdl006	E   |    H   |    B	12	nuc	diff	circular line	0.059	105
						single-kink line	0.103		12			5	7
1kkv	------	E   |    H   |    B	10	nuc	NMR	circular line	0.059	84
						single-kink line	0.081		11			5	5
328d	gdl053	E   |    H   |    B	12	nuc	diff	circular line	0.059	177
						single-kink line	0.080		7			5	7
						straight line	0.216
449d	dd0009	E   |    H   |    B	12	nuc	diff	circular line	0.059	118
						single-kink line	0.083		11			7	5
445d	dd0006	E   |    H   |    B	12	nuc	diff	circular line	0.060	223
						single-kink line	0.069		6			5	7
						straight line	0.155
448d	dd0008	E   |    H   |    B	12	nuc	diff	circular line	0.060	110
						single-kink line	0.088		11			6	6
1g8n	bd0044	E   |    H   |    B	12	nuc	diff	circular line	0.063	118
						single-kink line	0.098		10			5	7
2bdp	pde0131	E   |    H   |    B	9	prot-nuc	diff	circular line	0.064	133
						single-kink line	0.075		8			6	3
						straight line	0.122
1d29	bdl029	E   |    H   |    B	12	nuc	diff	circular line	0.065	107
						single-kink line	0.118		11			6	6
1g75	bd0043	E   |    H   |    B	12	nuc	diff	circular line	0.065	112
						single-kink line	0.090		11			5	7
333d	arhb90	E   |    H   |    B	8	nuc	diff	circular line	0.065	39
						single-kink line	0.097		16			4	4
1qv4	dd0059	E   |    H   |    B	12	nuc	diff	circular line	0.066	132
						single-kink line	0.089		9			5	7
0an8	adh010	E   |    H   |    B	8	nuc	diff	circular line	0.067	67
						straight line	0.211
						single-kink line	0.218		11			3	5
1cgc	bdj039	E   |    H   |    B	10	nuc	diff	circular line	0.067	336
						single-kink line	0.072		4			6	3
						straight line	0.073
1d43	gdl010	E   |    H   |    B	12	nuc	diff	circular line	0.067	213
						single-kink line	0.077		7			8	4
						straight line	0.169
1vj4	------	E   |    H   |    B	8	nuc	diff	circular line	0.067	67
						straight line	0.211
						single-kink line	0.218		11			3	5
167d	bdj055	E   |    H   |    B	10	nuc	diff	circular line	0.068	216
						single-kink line	0.076		7			7	2
						straight line	0.103
263d	gdl039	E   |    H   |    B	12	nuc	diff	circular line	0.068	155
						single-kink line	0.101		8			5	7
403d	bdd001	E   |    H   |    B	12	nuc	diff	circular line	0.068	123
						single-kink line	0.094		9			6	6
246d	ahh071	E   |    H   |    B	8	nuc	diff	circular line	0.069	110
						straight line	0.081
						single-kink line	0.131		7			5	3
2d95	adh027	E   |    H   |    B	8	nuc	diff	circular line	0.069	81
						single-kink line	0.124		8			4	4
						straight line	0.145
296d	gdl028	E   |    H   |    B	12	nuc	diff	circular line	0.070	219
						single-kink line	0.079		6			4	8
						straight line	0.168
1dou	bd0029	E   |    H   |    B	12	nuc	diff	circular line	0.071	162
						single-kink line	0.072		8			5	7
						straight line	0.249
1jgr	bd0054	E   |    H   |    B	12	nuc	diff	circular line	0.071	183
						single-kink line	0.079		7			4	8
						straight line	0.208
1pyj	------	E   |    H   |    B	11	nuc	NMR	circular line	0.071	178
						single-kink line	0.074		6			5	6
						straight line	0.135
212d	adj065	E   |    H   |    B	10	nuc	diff	circular line	0.072	38
						single-kink line	0.094		22			5	5
344d	adhb99	E   |    H   |    B	8	nuc	diff	circular line	0.072	113
						straight line	0.115
						single-kink line	0.126		7			4	4
109d	gdl033	E   |    H   |    B	12	nuc	diff	circular line	0.073	263
						single-kink line	0.098		5			5	7
						straight line	0.136
1d64	gdl015	E   |    H   |    B	12	nuc	diff	circular line	0.073	129
						single-kink line	0.086		10			5	7
1ftd	dd0036	E   |    H   |    B	12	nuc	diff	circular line	0.073	128
						single-kink line	0.089		10			5	7
1j8l	bd0053	E   |    H   |    B	12	nuc	diff	circular line	0.073	153
						single-kink line	0.100		8			5	7
						straight line	0.266
1prp	gdl023	E   |    H   |    B	12	nuc	diff	circular line	0.073	131
						single-kink line	0.082		10			5	7
447d	dd0007	E   |    H   |    B	12	nuc	diff	circular line	0.073	151
						single-kink line	0.120		7			6	6
428d	bd0005	E   |    H   |    B	12	nuc	diff	circular line	0.074	166
						single-kink line	0.081		8			5	7
						straight line	0.239
7bna	bdl005	E   |    H   |    B	12	nuc	diff	circular line	0.074	125
						single-kink line	0.078		10			5	7
264d	gdl026	E   |    H   |    B	12	nuc	diff	circular line	0.075	134
						single-kink line	0.092		9			5	7
115d	adhb11	E   |    H   |    B	8	nuc	diff	circular line	0.076	78
						straight line	0.169
						single-kink line	0.215		9			3	5
1bwt	------	E   |    H   |    B	10	nuc	NMR	circular line	0.077	83
						single-kink line	0.158		11			5	5
1d70	------	E   |    H   |    B	8	nuc	NMR	circular line	0.078	42
						single-kink line	0.109		17			4	4
1fq2	bd0041	E   |    H   |    B	12	nuc	diff	circular line	0.079	181
						single-kink line	0.086		7			5	7
						straight line	0.219
2ana	adh006	E   |    H   |    B	8	nuc	diff	circular line	0.079	49
						single-kink line	0.173		14			4	4
1d86	gdl018	E   |    H   |    B	12	nuc	diff	circular line	0.080	137
						single-kink line	0.094		9			5	7
1vzk	------	E   |    H   |    B	12	nuc	diff	circular line	0.080	132
						single-kink line	0.109		9			5	7
297d	bdlb82	E   |    H   |    B	12	nuc	diff	circular line	0.080	122
						single-kink line	0.130		9			6	6
1le5	pd0307	E   |    H   |    B	11	prot-nuc	diff	circular line	0.081	120
						single-kink line	0.082		9			5	6
355d	bdl084	E   |    H   |    B	12	nuc	diff	circular line	0.082	177
						single-kink line	0.088		7			5	7
						straight line	0.219
1a1k	pdt058	E   |    H   |    B	10	prot-nuc	diff	circular line	0.083	164
						single-kink line	0.087		6			6	4
						straight line	0.140
453d	dd0013	E   |    H   |    B	12	nuc	diff	circular line	0.083	98
						single-kink line	0.092		13			5	7
1m6f	dd0052	E   |    H   |    B	12	nuc	diff	circular line	0.084	115
						single-kink line	0.084		11			5	7
267d	gdlb41	E   |    H   |    B	12	nuc	diff	circular line	0.087	133
						single-kink line	0.102		9			5	7
1d28	bdl028	E   |    H   |    B	12	nuc	diff	circular line	0.088	96
						single-kink line	0.183		12			6	6
1d78	adh038	E   |    H   |    B	8	nuc	diff	circular line	0.088	56
						single-kink line	0.145		12			4	4
						straight line	0.276

Abbreviations