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(-) Description

Title :  MOLECULAR STRUCTURE OF THE A-TRACT DNA DODECAMER D(CGCAAATTTGCG) COMPLEXED WITH THE MINOR GROOVE BINDING DRUG NETROPSIN
 
Authors :  L. Tabernero, N. Verdaguer, M. Coll, I. Fita, G. A. Van Der Marel, J. H. Van Boom, A. Rich, J. Aymami
Date :  14 Apr 93  (Deposition) - 15 Jan 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Complexed With Drug (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. Tabernero, N. Verdaguer, M. Coll, I. Fita, G. A. Van Der Marel, J. H. Van Boom, A. Rich, J. Aymami
Molecular Structure Of The A-Tract Dna Dodecamer D(Cgcaaatttgcg) Complexed With The Minor Groove Binding Drug Netropsin.
Biochemistry V. 32 8403 1993
PubMed-ID: 8395202  |  Reference-DOI: 10.1021/BI00084A004
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)- 3')
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1NT1Ligand/IonNETROPSIN

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDA A:6 , DT A:7 , DT A:8 , DT A:9 , DG A:10 , DA B:17 , DA B:18 , DT B:19 , DT B:20 , DT B:21BINDING SITE FOR RESIDUE NT A 25

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 121D)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:DNA  Length:12
                                           
                  121d A  1 CGCAAATTTGCG 12
                                    10  

Chain B from PDB  Type:DNA  Length:12
                                           
                  121d B 13 CGCAAATTTGCG 24
                                    22  

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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