!doctype html public "-//w3c//dtd html 4.0 transitional//en"> IMB Jena Image Library - Nucleic Acid Duplex Bending Classification: Straight Line

Comprehensive Bending Classification of Nucleic Acid Double Helix Structures

Bending classification of helical axis - Straight line
(Last update: November 15, 2004)

Table 2b:

Structures for which the helical axis is best described by a straight line.
Sigma2 of the straight line is only slightly smaller (< 0.2) than for the next best model(s). The structures are listed by the goodness of fit sigma2(straight line) (s(2)).

Number of structures: 56

PDB 
NDB 
 IMB Jena
Image Library
bp
 molecule
type
method
s(2)
r
1ub8
ud0027
E   |    H   |    B
7
nuc
diff
1.997
15
466d
ar0013
E   |    H   |    B
7
nuc
diff
0.187
37
8icl
pde073
E   |    H   |    B
7
prot-nuc
diff
0.117
51
9icf
pde095
E   |    H   |    B
7
prot-nuc
diff
0.109
58
9icg
pde096
E   |    H   |    B
7
prot-nuc
diff
0.098
46
9ici
pde098
E   |    H   |    B
7
prot-nuc
diff
0.151
35
159d
gdhb25
E   |    H   |    B
8
nuc
diff
0.211
72
172d
adh054
E   |    H   |    B
8
nuc
diff
0.149
32
173d
ddh048
E   |    H   |    B
8
nuc
diff
0.770
41
1byx
------
E   |    H   |    B
8
nuc
NMR
0.426
24
1d18
------
E   |    H   |    B
8
nuc
NMR
0.341
39
1d83
------
E   |    H   |    B
8
nuc
NMR
0.477
30
1ekd
------
E   |    H   |    B
8
nuc
NMR
0.876
30
1ekh
------
E   |    H   |    B
8
nuc
NMR
1.109
32
1muv
------
E   |    H   |    B
8
nuc
NMR
0.265
22
1p3x
------
E   |    H   |    B
8
nuc
NMR
0.321
47
1pik
------
E   |    H   |    B
8
nuc
NMR
0.198
52
1qaj
pd0134
E   |    H   |    B
8
prot-nuc
diff
0.126
64
1qet
------
E   |    H   |    B
8
nuc
NMR
0.517
25
1sa9
ar0048
E   |    H   |    B
8
nuc
diff
0.552
24
1saq
ar0049
E   |    H   |    B
8
nuc
diff
0.942
25
1yfv
------
E   |    H   |    B
8
nuc
NMR
0.357
29
217d
ghhb35
E   |    H   |    B
8
nuc
diff
0.217
57
2d55
ddh037
E   |    H   |    B
8
nuc
diff
1.207
36
304d
gdlb49
E   |    H   |    B
8
nuc
diff
0.270
66
305d
gdlb50
E   |    H   |    B
8
nuc
diff
0.276
61
306d
gdlb51
E   |    H   |    B
8
nuc
diff
0.181
74
378d
gdh060
E   |    H   |    B
8
nuc
diff
0.217
39
402d
ar0001
E   |    H   |    B
8
nuc
diff
1.463
18
439d
ar0012
E   |    H   |    B
8
nuc
diff
0.374
22
441d
ad0004
E   |    H   |    B
8
nuc
diff
0.153
28
1a34
prv020
E   |    H   |    B
9
prot-nuc
diff
0.148
19
1dhh
------
E   |    H   |    B
9
nuc
NMR
0.222
31
1dn6
adi009
E   |    H   |    B
9
nuc
diff
0.619
22
1i6h
ph0004
E   |    H   |    B
9
prot-nuc
diff
1.079
31
1kln
pde004
E   |    H   |    B
9
prot-nuc
diff
0.254
40
1ksb
------
E   |    H   |    B
9
nuc
NMR
0.201
30
1mnv
dd0053
E   |    H   |    B
9
prot-nuc
diff
0.212
80
1d69
------
E   |    H   |    B
10
nuc
NMR
1.693
32
1lv5
pd0317
E   |    H   |    B
10
prot-nuc
diff
0.514
54
1njz
pd0375
E   |    H   |    B
10
prot-nuc
diff
0.531
60
1qkg
------
E   |    H   |    B
10
nuc
NMR
0.715
22
1snh
------
E   |    H   |    B
10
nuc
NMR
0.797
26
213d
adjb61
E   |    H   |    B
10
nuc
diff
0.539
20
321d
adj082
E   |    H   |    B
10
nuc
diff
0.399
21
1cr3
------
E   |    H   |    B
11
nuc
NMR
0.262
44
1dc1
pd0085
E   |    H   |    B
11
prot-nuc
diff
0.681
79
1n4b
------
E   |    H   |    B
11
nuc
NMR
1.847
51
132d
------
E   |    H   |    B
12
nuc
NMR
0.138
53
1ig4
------
E   |    H   |    B
12
prot-nuc
NMR
0.150
54
1opq
------
E   |    H   |    B
12
nuc
NMR
0.189
69
1pg9
------
E   |    H   |    B
12
nuc
NMR
0.252
54
1tgh
pdt024
E   |    H   |    B
12
prot-nuc
diff
0.476
23
1ytb
pdt012
E   |    H   |    B
12
prot-nuc
diff
0.412
21
1bf5
pdr052
E   |    H   |    B
17
prot-nuc
diff
0.549
56
1am9
pdt062
E   |    H   |    B
38
prot-nuc
diff
0.626
141

Abbreviations