1D83 - JenaLib

Title :   STRUCTURE REFINEMENT OF THE CHROMOMYCIN DIMER/DNA OLIGOMER COMPLEX IN SOLUTION

Authors :   X. Gao, P. Mirau, D. J. Patel

Date :   22 Jul 92 (Deposition) - 15 Jul 93 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B

Keywords :   Dna, Nmr, Double Helix, Chromomycin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. L. Gao, P. Mirau, D. J. Patel
Structure Refinement Of The Chromomycin Dimer-Dna Oligomer Complex In Solution.
J. Mol. Biol. V. 223 259 1992
PubMed-ID: 1731073 | Reference-DOI: 10.1016/0022-2836(92)90730-8
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 13)

NMR Structure (6, 13)

No.	Name	Count	Type	Full Name
1	1GL	2	Ligand/Ion	4-O-METHYL-2,6-DIDEOXY-ALPHA-D-GALACTO-HEXOPYRANOSE
2	ARI	2	Ligand/Ion	[O4]-ACETOXY-2,3-DIDEOXYFUCOSE
3	CDR	4	Ligand/Ion	2,3-DIDEOXYFUCOSE
4	CPH	2	Ligand/Ion	1,8-DIHYDROXY-7-METHYL-3-(1,3,4-TRIHYDROXY-2-OXO-PENTYL)-3,10-DIHYDRO-2H-ANTHRACEN-9-ONE
5	ERI	2	Ligand/Ion	4-O-ACETYL-2,6-DIDEOXY-3-C-METHYL-BETA-L-ARABINO-HEXOPYRANOSE
6	MG	1	Ligand/Ion	MAGNESIUM ION

Sites (13, 13)

NMR Structure (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	DC B:15 , ARI B:22	BINDING SITE FOR RESIDUE 1GL B 21
02	AC2	SOFTWARE	1GL B:21 , CPH B:23	BINDING SITE FOR RESIDUE ARI B 22
03	AC3	SOFTWARE	CDR A:25 , DC B:16 , CPH B:23	BINDING SITE FOR RESIDUE CDR A 24
04	AC4	SOFTWARE	CDR A:24 , ERI A:26 , ARI A:32	BINDING SITE FOR RESIDUE CDR A 25
05	AC5	SOFTWARE	DG A:3 , CDR A:25 , CPH A:33 , DT B:17 , DT B:18	BINDING SITE FOR RESIDUE ERI A 26
06	AC6	SOFTWARE	DG A:4 , DC A:5 , ARI A:32	BINDING SITE FOR RESIDUE 1GL A 31
07	AC7	SOFTWARE	CDR A:25 , 1GL A:31 , CPH A:33	BINDING SITE FOR RESIDUE ARI A 32
08	AC8	SOFTWARE	DC A:6 , CPH A:33 , CDR B:35	BINDING SITE FOR RESIDUE CDR B 34
09	AC9	SOFTWARE	CDR B:34 , ERI B:36	BINDING SITE FOR RESIDUE CDR B 35
10	BC1	SOFTWARE	DT A:7 , DT A:8 , DG B:13 , CPH B:23 , CDR B:35	BINDING SITE FOR RESIDUE ERI B 36
11	BC2	SOFTWARE	DG A:4 , CPH A:33 , DG B:14 , CPH B:23	BINDING SITE FOR RESIDUE MG B 1
12	BC3	SOFTWARE	CDR A:24 , CPH A:33 , MG B:1 , DG B:14 , DC B:15 , DC B:16 , ARI B:22 , ERI B:36	BINDING SITE FOR RESIDUE CPH B 23
13	BC4	SOFTWARE	DG A:4 , DC A:5 , DC A:6 , ERI A:26 , ARI A:32 , MG B:1 , CPH B:23 , CDR B:34	BINDING SITE FOR RESIDUE CPH A 33

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:DNA  Length:8
                                       
                  1d83 A  1 AAGGCCTT  8

Chain B from PDB  Type:DNA  Length:8
                                       
                  1d83 B 11 AAGGCCTT 18

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Classification and Annotation

SCOP Domains (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (0, 0)

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