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(-) Description

Title :  SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX
 
Authors :  S. B. Larson, J. Day, A. J. Greenwood, A. Mcpherson
Date :  28 Jan 98  (Deposition) - 29 Apr 98  (Release) - 25 Jul 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.81
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Water Structure, Rna, Virus Assembly, Macromolecular Interactions, Satellite Tobacco Mosaic Virus, Icosahedral Virus, Virus-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. B. Larson, J. Day, A. Greenwood, A. Mcpherson
Refined Structure Of Satellite Tobacco Mosaic Virus At 1. 8 Resolution.
J. Mol. Biol. V. 277 37 1998
PubMed-ID: 9514737  |  Reference-DOI: 10.1006/JMBI.1997.1570
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (SATELLITE TOBACCO MOSAIC VIRUS)
    Chains: A
    Engineered: YES
    Expression System: NICOTIANA TABACUM
    Expression System Common: COMMON TOBACCO
    Expression System Taxid: 4097
    Organism Scientific: SATELLITE TOBACCO MOSAIC VIRUS
    Organism Taxid: 12881
    Synonym: STMV
 
Molecule 2 - RNA (5'-R(P*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')
    Chains: C
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (60x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
2U1Ligand/IonURIDINE-5'-MONOPHOSPHATE
Biological Unit 1 (1, 60)
No.NameCountTypeFull Name
1SO460Ligand/IonSULFATE ION
2U-1Ligand/IonURIDINE-5'-MONOPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:115 , ASN A:117 , HOH A:2701BINDING SITE FOR RESIDUE SO4 A 3001
2AC2SOFTWARETHR A:13 , GLY A:14 , A B:8 , A B:9BINDING SITE FOR RESIDUE U B 11

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1A34)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1A34)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1A34)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1A34)

(-) Exons   (0, 0)

(no "Exon" information available for 1A34)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:147
 aligned with COAT_STMV | P17574 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:147
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       
            COAT_STMV    13 TGDNSNVVTMIRAGSYPKVNPTPTWVRAIPFEVSVQSGIAFKVPVGSLFSANFRTDSFTSVTVMSVRAWTQLTPPVNEYSFVRLKPLFKTGDSTEEFEGRASNINTRASVGYRIPTNLRQNTVAADNVCEVRSNCRQVALVISCCFN 159
               SCOP domains d1a34a_ A: STNV coat protein                                                                                                                        SCOP domains
               CATH domains 1a34A00 A:13-159  [code=2.60.120.220, no name defined]                                                                                              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................eeeeeeeeee......eeeehhhh..hhh......eeeeeeeeeee..........eeeeee..........eeee........eeeee..hhh........eeeeeee...eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1a34 A  13 TGDNSNVVTMIRAGSYPKVNPTPTWVRAIPFEVSVQSGIAFKVPVGSLFSANFRTDSFTSVTVMSVRAWTQLTPPVNEYSFVRLKPLFKTGDSTEEFEGRASNINTRASVGYRIPTNLRQNTVAADNVCEVRSNCRQVALVISCCFN 159
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       


Chain B from PDB  Type:RNA  Length:10
                                          
                 1a34 B   1 AAAAAAAAAA  10
                                    10


Chain C from PDB  Type:RNA  Length:10
                                          
                 1a34 C   1 UUUUUUUUUU  10
                                    10
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A34)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (COAT_STMV | P17574)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  1a34
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        COAT_STMV | P17574: 4nia 4oq8 4oq9

(-) Related Entries Specified in the PDB File

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