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(-) Description

Title :  STRUCTURE OF AF2299, A CDP-ALCOHOL PHOSPHOTRANSFERASE (CDP-BOUND)
 
Authors :  O. B. Clarke, G. Sciara, D. Tomasek, S. Banerjee, K. R. Rajashankar, L. S F. Mancia, New York Consortium On Membrane Protein Structure
Date :  22 Dec 13  (Deposition) - 14 May 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cdp-Alcohol Phosphotransferase, Membrane Protein, Structural Genomics, Psi-Biology, New York Consortium On Membrane Protein Structure, Nycomps, Membrane, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Sciara, O. B. Clarke, D. Tomasek, B. Kloss, S. Tabuso, R. Byfield, R. Cohn, S. Banerjee, K. R. Rajashankar, V. Slavkovic, J. H. Graziano, L. Shapiro, F. Mancia
Structural Basis For Catalysis In A Cdp-Alcohol Phosphotransferase.
Nat Commun V. 5 4068 2014
PubMed-ID: 24923293  |  Reference-DOI: 10.1038/NCOMMS5068

(-) Compounds

Molecule 1 - AF2299, A CDP-ALCOHOL PHOSPHOTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Gene: AF2299, AF_2299
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: DSM 4304

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 17)

Asymmetric/Biological Unit (4, 17)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2CDP2Ligand/IonCYTIDINE-5'-DIPHOSPHATE
3MPG9Ligand/Ion1-MONOOLEOYL-RAC-GLYCEROL
4TLA2Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:214 , ASP A:217 , ASP A:235 , CDP A:403BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREASP A:214 , ASP A:235 , ASP A:239 , HOH A:503BINDING SITE FOR RESIDUE CA A 402
03AC3SOFTWAREARG A:157 , PRO A:174 , ASN A:175 , THR A:178 , ASP A:214 , GLY A:215 , ASP A:217 , GLY A:218 , ARG A:222 , GLU A:227 , SER A:228 , GLY A:231 , ALA A:232 , ASP A:235 , CA A:401 , TLA A:409 , HOH A:507 , HOH A:509BINDING SITE FOR RESIDUE CDP A 403
04AC4SOFTWAREVAL A:314 , LEU A:316BINDING SITE FOR RESIDUE MPG A 404
05AC5SOFTWAREGLN A:176 , MPG A:408BINDING SITE FOR RESIDUE MPG A 405
06AC6SOFTWAREPHE A:180BINDING SITE FOR RESIDUE MPG A 406
07AC7SOFTWAREVAL A:179BINDING SITE FOR RESIDUE MPG A 407
08AC8SOFTWAREVAL A:179 , MPG A:405BINDING SITE FOR RESIDUE MPG A 408
09AC9SOFTWAREARG A:240 , ILE A:275 , THR A:300 , ARG A:301 , ARG A:304 , CDP A:403BINDING SITE FOR RESIDUE TLA A 409
10BC1SOFTWAREASP B:214 , ASP B:217 , ASP B:235 , CDP B:403BINDING SITE FOR RESIDUE CA B 401
11BC2SOFTWAREASP B:214 , ASP B:235 , ASP B:239 , HOH B:527BINDING SITE FOR RESIDUE CA B 402
12BC3SOFTWARELYS B:136 , TYR B:146 , ARG B:157 , PRO B:174 , ASN B:175 , THR B:178 , ASP B:214 , GLY B:215 , ASP B:217 , GLY B:218 , ARG B:222 , GLU B:227 , SER B:228 , GLY B:231 , ALA B:232 , ASP B:235 , CA B:401 , HOH B:533 , HOH B:541 , HOH B:548 , HOH B:555BINDING SITE FOR RESIDUE CDP B 403
13BC4SOFTWARELEU B:167 , VAL B:172 , MPG B:405BINDING SITE FOR RESIDUE MPG B 404
14BC5SOFTWAREGLN B:176 , MPG B:404 , MPG B:406BINDING SITE FOR RESIDUE MPG B 405
15BC6SOFTWAREMPG B:405BINDING SITE FOR RESIDUE MPG B 406
16BC7SOFTWAREVAL B:322 , LEU B:326BINDING SITE FOR RESIDUE MPG B 407
17BC8SOFTWARETYR B:146 , ARG B:240 , ILE B:275 , ALA B:276 , THR B:300 , ARG B:301 , ARG B:304BINDING SITE FOR RESIDUE TLA B 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O6N)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O6N)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O6N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O6N)

(-) Exons   (0, 0)

(no "Exon" information available for 4O6N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh.ee..eehhhhhhhhhhhh..eeeee.........eeeee...eee..........eeeee..eeeeeeee.hhhhh...hhhhhhhhhhhhh..eeee..eee....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6n A   1 MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVGYFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIYDGWIAREINRKVSLRISRLLADTSVTPNQITVFSFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFIIVFSITYVLSASNPVYWIIGFLAAFASLMIAYTGDKFVAAYMRTYSPEGFAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRSYTN 344
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    || 151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341   
                                                                                                                                                                135|                                                                                                                                                                                                     
                                                                                                                                                                 147                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhh.ee..eehhhhhhhhhhhh..eeeee.........eeeee...eee..........eeeee..eeeeeeee.hhhhh...hhhhhhhhhhhhh...eee..eee....hhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6n B   1 MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVGYFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIKAKRTGLKPAYYDGWIAREINRKVSLRISRLLADTSVTPNQITVFSFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFIIVFSITYVLSASNPVYWIIGFLAAFASLMIAYTGDKFVAAYMRTYSPEGFAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRS 341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O6N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O6N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O6N)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        O27985_ARCFU | O27985: 4o6m 4q7c 5d91 5d92

(-) Related Entries Specified in the PDB File

4o6m CMP-BOUND FORM OF SAME PROTEIN RELATED ID: NYCOMPS-GO.894 RELATED DB: TARGETTRACK