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(-) Description

Title :  STRUCTURE OF AF2299, A CDP-ALCOHOL PHOSPHOTRANSFERASE (CMP-BOUND)
 
Authors :  O. B. Clarke, G. Sciara, D. Tomasek, S. Banerjee, K. R. Rajashankar, L. S F. Mancia, New York Consortium On Membrane Protein Structure
Date :  22 Dec 13  (Deposition) - 14 May 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cdp-Alcohol Phosphotransferase, Membrane Protein, Structural Genomics, Psi-Biology, New York Consortium On Membrane Protein Structure, Nycomps, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Sciara, O. B. Clarke, D. Tomasek, B. Kloss, S. Tabuso, R. Byfield, R. Cohn, S. Banerjee, K. R. Rajashankar, V. Slavkovic, J. H. Graziano, L. Shapiro, F. Mancia
Structural Basis For Catalysis In A Cdp-Alcohol Phosphotransferase.
Nat Commun V. 5 4068 2014
PubMed-ID: 24923293  |  Reference-DOI: 10.1038/NCOMMS5068

(-) Compounds

Molecule 1 - AF2299, A CDP-ALCOHOL PHOSPHOTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Gene: AF2299, AF_2299
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: DSM 4304

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 35)

Asymmetric/Biological Unit (4, 35)
No.NameCountTypeFull Name
1C5P1Ligand/IonCYTIDINE-5'-MONOPHOSPHATE
2CA2Ligand/IonCALCIUM ION
3MPG24Ligand/Ion1-MONOOLEOYL-RAC-GLYCEROL
4SO48Ligand/IonSULFATE ION

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:148 , ASP A:214 , ASP A:217 , ASP A:235 , ASP A:239 , HOH A:574 , HOH A:576 , HOH A:580BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREVAL A:179 , MPG A:404 , MPG A:405BINDING SITE FOR RESIDUE MPG A 402
03AC3SOFTWAREMPG A:402BINDING SITE FOR RESIDUE MPG A 404
04AC4SOFTWAREMPG A:402BINDING SITE FOR RESIDUE MPG A 405
05AC5SOFTWARELEU A:326 , PHE A:330BINDING SITE FOR RESIDUE MPG A 407
06AC6SOFTWARELEU A:193BINDING SITE FOR RESIDUE MPG A 408
07AC7SOFTWARETHR A:173 , ASN A:175 , HOH A:553BINDING SITE FOR RESIDUE SO4 A 410
08AC8SOFTWAREARG A:240 , ILE A:275 , ALA A:276 , THR A:300 , ARG A:301 , ARG A:304 , HOH A:540 , HOH A:542BINDING SITE FOR RESIDUE SO4 A 411
09AC9SOFTWAREGLY A:68 , ARG A:69BINDING SITE FOR RESIDUE SO4 A 412
10BC1SOFTWAREPRO A:292 , GLU A:293 , ARG A:334 , ALA A:338 , HOH A:564BINDING SITE FOR RESIDUE SO4 A 413
11BC2SOFTWAREASP B:214 , ASP B:217 , ASP B:235 , C5P B:422 , HOH B:578BINDING SITE FOR RESIDUE CA B 401
12BC3SOFTWARETHR B:170BINDING SITE FOR RESIDUE MPG B 404
13BC4SOFTWARELEU B:326BINDING SITE FOR RESIDUE MPG B 405
14BC5SOFTWAREVAL B:322BINDING SITE FOR RESIDUE MPG B 406
15BC6SOFTWARETYR B:230 , MPG B:413BINDING SITE FOR RESIDUE MPG B 407
16BC7SOFTWAREALA B:310BINDING SITE FOR RESIDUE MPG B 408
17BC8SOFTWAREPHE A:303 , MPG B:416BINDING SITE FOR RESIDUE MPG B 409
18BC9SOFTWAREMPG B:417BINDING SITE FOR RESIDUE MPG B 410
19CC1SOFTWAREMPG B:413BINDING SITE FOR RESIDUE MPG B 411
20CC2SOFTWARELEU B:186 , MPG B:407 , MPG B:411BINDING SITE FOR RESIDUE MPG B 413
21CC3SOFTWAREMPG B:415BINDING SITE FOR RESIDUE MPG B 414
22CC4SOFTWARELEU B:193 , TYR B:252 , MPG B:414BINDING SITE FOR RESIDUE MPG B 415
23CC5SOFTWAREVAL A:322 , MPG B:409BINDING SITE FOR RESIDUE MPG B 416
24CC6SOFTWAREPHE A:295 , MPG B:410 , HOH B:532 , HOH B:579BINDING SITE FOR RESIDUE MPG B 417
25CC7SOFTWAREGLY B:68 , ARG B:69BINDING SITE FOR RESIDUE SO4 B 418
26CC8SOFTWARETYR B:146 , ARG B:240 , ILE B:275 , ALA B:276 , THR B:300 , ARG B:301 , ARG B:304 , HOH B:534 , HOH B:569 , HOH B:576BINDING SITE FOR RESIDUE SO4 B 419
27CC9SOFTWAREGLN B:176 , HOH B:539 , HOH B:557 , HOH B:564BINDING SITE FOR RESIDUE SO4 B 420
28DC1SOFTWARETYR B:197BINDING SITE FOR RESIDUE SO4 B 421
29DC2SOFTWARELYS B:136 , ARG B:157 , PRO B:174 , ASN B:175 , THR B:178 , ASP B:214 , GLY B:215 , ASP B:217 , GLY B:218 , ARG B:222 , GLU B:227 , SER B:228 , GLY B:231 , ALA B:232 , ASP B:235 , CA B:401 , HOH B:518 , HOH B:526 , HOH B:531 , HOH B:578BINDING SITE FOR RESIDUE C5P B 422

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O6M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O6M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O6M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O6M)

(-) Exons   (0, 0)

(no "Exon" information available for 4O6M)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee.hhhhh.ee..eehhhhhhhhhhhh..eeeee.........eeeee...eee..........eeeee..eeeeeeee.hhhhh...hhhhhhhhhhhhh...eee..eee....hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4o6m A   1 MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVGYFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIDGWIAREINRKVSLRISRLLADTSVTPNQITVFSFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFIIVFSITYVLSASNPVYWIIGFLAAFASLMIAYTGDKFVAAYMRTYSPEGFAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRSY 342
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    || 152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342
                                                                                                                                                                135|                                                                                                                                                                                                  
                                                                                                                                                                 148                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh.ee..eehhhhhhhhhhhh..eeeee.........eeeee...eee..........eeeee..eeeeeeee.hhhhh...hhhhhhhhhhhhh...eee..eee....hhhhhhhhhhhh...hhhhh.......hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6m B   1 MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVGYFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIKAKRTGLKPAYYDGWIAREINRKVSLRISRLLADTSVTPNQITVFSFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFIIVFSITYVLSASNPVYWIIGFLAAFASLMIAYTGDKFVAAYMRTYSPEGFAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRS 341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O6M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O6M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O6M)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        O27985_ARCFU | O27985: 4o6n 4q7c 5d91 5d92

(-) Related Entries Specified in the PDB File

4o6n RELATED ID: NYCOMPS-GO.894 RELATED DB: TARGETTRACK