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(-) Description

Title :  STRUCTURE OF AF2299, A CDP-ALCOHOL PHOSPHOTRANSFERASE
 
Authors :  O. B. Clarke, G. Sciara, D. Tomasek, S. Banerjee, K. R. Rajashankar, L. S F. Mancia, New York Consortium On Membrane Protein Structure
Date :  24 Apr 14  (Deposition) - 28 May 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cdp-Alcohol Phosphotransferase, Membrane Protein, Structural Genomics, Psi-Biology, New York Consortium On Membrane Protein Structure, Nycomps, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Sciara, O. B. Clarke, D. Tomasek, B. Kloss, S. Tabuso, R. Byfield, R. Cohn, S. Banerjee, K. R. Rajashankar, V. Slavkovic, J. H. Graziano, L. Shapiro, F. Mancia
Structural Basis For Catalysis In A Cdp-Alcohol Phosphotransferase.
Nat Commun V. 5 4068 2014
PubMed-ID: 24923293  |  Reference-DOI: 10.1038/NCOMMS5068

(-) Compounds

Molecule 1 - AF2299, A CDP-ALCOHOL PHOSPHOTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Gene: AF2299, AF_2299
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric/Biological Unit (4, 16)
No.NameCountTypeFull Name
1C2G2Ligand/Ion[CYTIDINE-5'-PHOSPHATE] GLYCERYLPHOSPHORIC ACID ESTER
2CA4Ligand/IonCALCIUM ION
3MPG8Ligand/Ion1-MONOOLEOYL-RAC-GLYCEROL
4TLA2Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:214 , ASP A:217 , ASP A:235 , CA A:402 , C2G A:408BINDING SITE FOR RESIDUE CA A 401
02AC2SOFTWAREASP A:214 , ASP A:235 , ASP A:239 , CA A:401BINDING SITE FOR RESIDUE CA A 402
03AC3SOFTWAREGLN A:176 , MPG A:405 , MPG A:406BINDING SITE FOR RESIDUE MPG A 403
04AC4SOFTWAREPHE A:180BINDING SITE FOR RESIDUE MPG A 404
05AC5SOFTWAREVAL A:179 , TYR A:230 , MPG A:403BINDING SITE FOR RESIDUE MPG A 405
06AC6SOFTWAREMPG A:403BINDING SITE FOR RESIDUE MPG A 406
07AC7SOFTWAREARG A:240 , ILE A:275 , ALA A:276 , ARG A:301 , ARG A:304 , C2G A:408BINDING SITE FOR RESIDUE TLA A 407
08AC8SOFTWAREASP A:148 , ALA A:152 , ASN A:156 , ARG A:157 , PRO A:174 , ASN A:175 , THR A:178 , SER A:211 , ASP A:214 , GLY A:215 , ASP A:217 , GLY A:218 , ARG A:222 , GLU A:227 , SER A:228 , GLY A:231 , ALA A:232 , ASP A:235 , CA A:401 , TLA A:407BINDING SITE FOR RESIDUE C2G A 408
09AC9SOFTWAREASP B:214 , ASP B:217 , ASP B:235 , C2G B:408BINDING SITE FOR RESIDUE CA B 401
10BC1SOFTWAREASP B:214 , ASP B:235 , ASP B:239BINDING SITE FOR RESIDUE CA B 402
11BC2SOFTWAREVAL B:172BINDING SITE FOR RESIDUE MPG B 403
12BC3SOFTWAREPHE B:180 , MPG B:405BINDING SITE FOR RESIDUE MPG B 404
13BC4SOFTWARETHR B:170 , MPG B:404BINDING SITE FOR RESIDUE MPG B 405
14BC5SOFTWARELEU B:267BINDING SITE FOR RESIDUE MPG B 406
15BC6SOFTWARETYR B:146 , ARG B:240 , ILE B:275 , ALA B:276 , THR B:300 , ARG B:301 , ARG B:304 , C2G B:408BINDING SITE FOR RESIDUE TLA B 407
16BC7SOFTWARELYS B:136 , ALA B:152 , ARG B:157 , PRO B:174 , ASN B:175 , THR B:178 , SER B:211 , ASP B:214 , GLY B:215 , ASP B:217 , GLY B:218 , ALA B:221 , ARG B:222 , GLU B:227 , SER B:228 , GLY B:231 , ALA B:232 , ASP B:235 , CA B:401 , TLA B:407BINDING SITE FOR RESIDUE C2G B 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Q7C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Q7C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Q7C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Q7C)

(-) Exons   (0, 0)

(no "Exon" information available for 4Q7C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh.ee..eehhhhhhhhhhhh..eeeee.........eeeee...eee..........eeeee..eeeeeeee.hhhhh...hhhhhhhhhhhh....eee..eee....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q7c A   1 MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVGYFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIYDGWIAREINRKVSLRISRLLADTSVTPNQITVFSFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFIIVFSITYVLSASNPVYWIIGFLAAFASLMIAYTGDKFVAAYMRTYSPEGFAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRSYT 343
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    || 151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341  
                                                                                                                                                                135|                                                                                                                                                                                                    
                                                                                                                                                                 147                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhh.ee..eehhhhhhhhhhhh..eeeee.........eeeee...eee..........eeeee..eeeeeeee.hhhhh...hhhhhhhhhhhhh..eeee..eee....hhhhhhhhhhhh...hhhhh.......hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4q7c B   1 MRLAYVKNHEIYGEKLLGLTLRERIEKTLQRAGFDVRFFDELSLEEAEDYLIILEPVLILERDLLLEGRKILVSDGFTVGYFFGGDFRTVFDGNLQSSIEKYLSLNNLESYEIWAIKLSNDNLKTAEKLLLSSLIKAKRTGLKPAYYDGWIAREINRKVSLRISRLLADTSVTPNQITVFSFFLSLVGSALFLLNSYLTTLLAGVIIQLHSIIDGCDGEIARLKFMESKYGAWLDGVLDRYSDFIIVFSITYVLSASNPVYWIIGFLAAFASLMIAYTGDKFVAAYMRTYSPEGFAIPITRDFRLLIIFACSVVNLPSLALVIIALLGNFEALRRIVALRS 341
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Q7C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Q7C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Q7C)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        O27985_ARCFU | O27985: 4o6m 4o6n 5d91 5d92

(-) Related Entries Specified in the PDB File

4o6m STRUCTURE OF AF2299 IN COMPLEX WITH CMP
4o6n STRUCTURE OF AF2299 IN COMPLEX WITH CDP RELATED ID: NYCOMPS-GO.894 RELATED DB: TARGETTRACK