4D00 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   HAEMAGGLUTININ OF H10N8 INFLUENZA VIRUS ISOLATED FROM HUMANS IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN

Authors :   X. Xiong, L. F. Haire, S. G. Vachieri, P. J. Collins, P. A. Walker, S. R. Ma Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel

Date :   23 Apr 14 (Deposition) - 11 Jun 14 (Release) - 30 Jul 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Viral Protein, H10N8, Influenza, Sialic Acid, Glycoprotein, Virus Receptor, Avian Flu, Sialyllactosamine, Lsta (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. Haire, Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Receptor Binding By H10 Influenza Viruses.
Nature V. 511 475 2014
PubMed-ID: 24870229 | Reference-DOI: 10.1038/NATURE13443

Molecule 1 - HAEMAGGLUTININ HA1
	Chains	:	A, C, E
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PFASTBAC1
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	HA1 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES -2-323
	Organism Scientific	:	INFLUENZA VIRUS A/JIANGXI- DONGHU/346/2013 (H10N8)
	Organism Taxid	:	11309
	Other Details	:	CHINA CDC

Molecule 2 - HAEMAGGLUTININ HA1
	Chains	:	B, D, F
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PFASTBAC1
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	HA2 OF TRYPSIN RELEASED ECTODOMAIN, RESIDUES 1-183
	Organism Scientific	:	INFLUENZA VIRUS A/JIANGXI- DONGHU/346/2013 (H10N8)
	Organism Taxid	:	11309
	Other Details	:	CHINA CDC

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 24)

No.	Name	Count	Type	Full Name
1	GAL	3	Ligand/Ion	BETA-D-GALACTOSE
2	NAG	15	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	NI	3	Ligand/Ion	NICKEL (II) ION
4	SIA	3	Ligand/Ion	O-SIALIC ACID

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:104 , GLU B:64 , ASN F:79 , NAG F:1174	BINDING SITE FOR RESIDUE NI A1321
02	AC2	SOFTWARE	ASN B:79 , NAG B:1176 , HOH B:2047 , GLU C:104 , GLU D:64	BINDING SITE FOR RESIDUE NI B1178
03	AC3	SOFTWARE	ASN D:79 , NAG D:1177 , GLU E:104 , GLU F:64	BINDING SITE FOR RESIDUE NI D1179
04	AC4	SOFTWARE	ASN A:28 , HOH A:2180 , LEU B:52	BINDING SITE FOR MONO-SACCHARIDE NAG A1320 BOUND TO ASN A 28
05	AC5	SOFTWARE	ARG A:162 , ASN A:235 , PRO E:214	BINDING SITE FOR MONO-SACCHARIDE NAG A1319 BOUND TO ASN A 235
06	AC6	SOFTWARE	HIS B:75 , ASN B:79 , ASN B:82 , NI B:1178 , HOH B:2050 , HOH B:2093 , HOH B:2094 , GLU C:104	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1176 THROUGH NAG B1177 BOUND TO ASN B 82
07	AC7	SOFTWARE	ASN C:28 , THR C:311 , HOH C:2151	BINDING SITE FOR MONO-SACCHARIDE NAG C1320 BOUND TO ASN C 28
08	AC8	SOFTWARE	ARG C:162 , GLY C:233 , ASP C:234 , ASN C:235	BINDING SITE FOR MONO-SACCHARIDE NAG C1319 BOUND TO ASN C 235
09	AC9	SOFTWARE	HIS D:75 , ASN D:79 , ASN D:82 , NI D:1179 , HOH D:2080 , HOH D:2081 , GLU E:104	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D1177 THROUGH NAG D1178 BOUND TO ASN D 82
10	BC1	SOFTWARE	ASN E:28 , THR E:311 , HOH E:2131	BINDING SITE FOR MONO-SACCHARIDE NAG E1320 BOUND TO ASN E 28
11	BC2	SOFTWARE	PRO C:214 , ARG E:162 , ASP E:234 , ASN E:235	BINDING SITE FOR MONO-SACCHARIDE NAG E1319 BOUND TO ASN E 235
12	BC3	SOFTWARE	GLU A:104 , ARG A:256 , NI A:1321 , HOH A:2087 , HIS F:75 , ASN F:79 , ASN F:82 , HOH F:2059	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG F1174 THROUGH NAG F1175 BOUND TO ASN F 82
13	BC4	SOFTWARE	TYR A:88 , GLY A:125 , THR A:126 , THR A:127 , ARG A:128 , TRP A:144 , HIS A:176 , GLU A:183 , LEU A:187 , GLN A:215 , GLY A:218 , GLN A:219 , HOH A:2066 , HOH A:2100 , HOH A:2102 , HOH A:2137	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A1322 THROUGH NAG A1324
14	BC5	SOFTWARE	TYR A:88 , GLU A:104 , GLY A:125 , THR A:126 , THR A:127 , ARG A:128 , TRP A:144 , HIS A:176 , GLU A:183 , LEU A:187 , GLN A:215 , GLY A:218 , GLN A:219 , HOH A:2066 , HOH A:2100 , HOH A:2102 , HOH A:2137 , GLU B:64 , TYR C:88 , GLY C:125 , THR C:126 , THR C:127 , ARG C:128 , TRP C:144 , HIS C:176 , GLU C:183 , GLN C:215 , GLY C:218 , GLN C:219 , HOH C:2056 , HOH C:2073 , HOH C:2074 , HOH C:2078 , HOH C:3006 , ASN F:79 , NAG F:1174	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA C1321 THROUGH NAG C1323
15	BC6	SOFTWARE	ALA C:11 , TYR C:88 , GLY C:125 , THR C:126 , THR C:127 , ARG C:128 , TRP C:144 , HIS C:176 , GLU C:183 , GLN C:215 , GLY C:218 , GLN C:219 , GLU C:318 , HOH C:2056 , HOH C:2073 , HOH C:2074 , HOH C:2078 , HOH C:3006 , GLU D:15 , TYR E:88 , GLY E:125 , THR E:126 , THR E:127 , ARG E:128 , ASN E:136 , TRP E:144 , HIS E:176 , GLU E:183 , GLY E:218 , GLN E:219 , HOH E:2053 , HOH E:2075 , HOH E:2076 , HOH E:3002 , HOH E:3003	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E1321 THROUGH NAG E1323

Asymmetric/Biological Unit

No.	Residues
1	A:4	-	B:137
2	A:42	-	A:270
3	A:54	-	A:66
4	A:87	-	A:130
5	A:274	-	A:298
6	B:144	-	B:148
7	C:4	-	D:137
8	C:42	-	C:270
9	C:54	-	C:66
10	C:87	-	C:130
11	C:274	-	C:298
12	D:144	-	D:148
13	E:4	-	F:137
14	E:42	-	E:270
15	E:54	-	E:66
16	E:87	-	E:130
17	E:274	-	E:298
18	F:144	-	F:148

(no "Cis Peptide Bond" information available for 4D00)

(no "SAP(SNP)/Variant" information available for 4D00)

(no "PROSITE Motif" information available for 4D00)

(no "Exon" information available for 4D00)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:319
 aligned with HEMA_I49A1 | Q0A448 from UniProtKB/Swiss-Prot  Length:561

    Alignment length:319
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326         
           HEMA_I49A1    17 LDRICLGHHAVANGTIVKTLTNEQEEVTNATETVESTNLNKLCMKGRSYKDLGNCHPVGMLIGTPVCDPHLTGTWDTLIERENAIAHCYPGATINEEALRQKIMESGGISKMSTGFTYGSSINSAGTTKACMRNGGDSFYAELKWLVSKTKGQNFPQTTNTYRNTDTAEHLIIWGIHHPSSTQEKNDLYGTQSLSISVESSTYQNNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLTGRGLGIQSEALIDNSCESKCFWRGGSINTKLPFQNLSPRTVGQCPKYVNQRSLLLATGMRNVPE 335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhhhhh.ee..eeee..............hhhhhhhhhh...eeeeee........eeeee.eeeeee..eee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d00 A   0 PDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTGINRLCMKGRKHKDLGNCHPIGMLIGTPACDLHLTGMWDTLIERENAIAYCYPGATVNVEALRQKIMESGGINKISTGFTYGSSINSAGTTRACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYRNNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNRRSLMLATGMRNVPE 318
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309

Chain B from PDB  Type:PROTEIN  Length:175
 aligned with HEMA_I49A0 | P12581 from UniProtKB/Swiss-Prot  Length:561

    Alignment length:175
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510     
           HEMA_I49A0   341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHTCDDSCMESIRNNTYDHSQYREEALLNRLNINS 515
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh...........eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d00 B   1 GLFGAIAGFLENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLVEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLNINP 175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain C from PDB  Type:PROTEIN  Length:321
 aligned with HEMA_I49A1 | Q0A448 from UniProtKB/Swiss-Prot  Length:561

    Alignment length:321
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334 
           HEMA_I49A1    15 KGLDRICLGHHAVANGTIVKTLTNEQEEVTNATETVESTNLNKLCMKGRSYKDLGNCHPVGMLIGTPVCDPHLTGTWDTLIERENAIAHCYPGATINEEALRQKIMESGGISKMSTGFTYGSSINSAGTTKACMRNGGDSFYAELKWLVSKTKGQNFPQTTNTYRNTDTAEHLIIWGIHHPSSTQEKNDLYGTQSLSISVESSTYQNNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLTGRGLGIQSEALIDNSCESKCFWRGGSINTKLPFQNLSPRTVGQCPKYVNQRSLLLATGMRNVPE 335
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhhhhh.ee..eeee..............hhhhhhhhhh...eeeeee........eeeee.eeeeee..eee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d00 C  -2 ADPDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTGINRLCMKGRKHKDLGNCHPIGMLIGTPACDLHLTGMWDTLIERENAIAYCYPGATVNVEALRQKIMESGGINKISTGFTYGSSINSAGTTRACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYRNNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNRRSLMLATGMRNVPE 318
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317

Chain D from PDB  Type:PROTEIN  Length:176
 aligned with HEMA_I49A0 | P12581 from UniProtKB/Swiss-Prot  Length:561

    Alignment length:176
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510      
           HEMA_I49A0   341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHTCDDSCMESIRNNTYDHSQYREEALLNRLNINSV 516
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh...........eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d00 D   1 GLFGAIAGFLENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLVEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLNINPV 176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain E from PDB  Type:PROTEIN  Length:319
 aligned with HEMA_I49A1 | Q0A448 from UniProtKB/Swiss-Prot  Length:561

    Alignment length:319
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326         
           HEMA_I49A1    17 LDRICLGHHAVANGTIVKTLTNEQEEVTNATETVESTNLNKLCMKGRSYKDLGNCHPVGMLIGTPVCDPHLTGTWDTLIERENAIAHCYPGATINEEALRQKIMESGGISKMSTGFTYGSSINSAGTTKACMRNGGDSFYAELKWLVSKTKGQNFPQTTNTYRNTDTAEHLIIWGIHHPSSTQEKNDLYGTQSLSISVESSTYQNNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLTGRGLGIQSEALIDNSCESKCFWRGGSINTKLPFQNLSPRTVGQCPKYVNQRSLLLATGMRNVPE 335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhhhhh.ee..eeee..............hhhhhhhhhh...eeeeee........eeeee.eeeeee..eee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d00 E   0 PDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTGINRLCMKGRKHKDLGNCHPIGMLIGTPACDLHLTGMWDTLIERENAIAYCYPGATVNVEALRQKIMESGGINKISTGFTYGSSINSAGTTRACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYRNNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNRRSLMLATGMRNVPE 318
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309

Chain F from PDB  Type:PROTEIN  Length:173
 aligned with HEMA_I49A0 | P12581 from UniProtKB/Swiss-Prot  Length:561

    Alignment length:173
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510   
           HEMA_I49A0   341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHTCDDSCMESIRNNTYDHSQYREEALLNRLNI 513
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh...........eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4d00 F   1 GLFGAIAGFLENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLVEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLNI 173
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4D00)

(no "CATH Domain" information available for 4D00)

(no "Pfam Domain" information available for 4D00)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,C,E (HEMA_I49A1 | Q0A448)

molecular function
	GO:0046789	host cell surface receptor binding	Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0019065	receptor-mediated endocytosis of virus by host cell	Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Chain B,D,F (HEMA_I49A0 | P12581)

molecular function
	GO:0046789	host cell surface receptor binding	Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0019065	receptor-mediated endocytosis of virus by host cell	Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

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4cyv	STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ
4cyw	STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOG 6- SLN
4cyz	STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOG LSTA
4cz0	STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOG SU -3SLN

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