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(-) Description

Title :  STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ
 
Authors :  S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. H J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Date :  15 Apr 14  (Deposition) - 11 Jun 14  (Release) - 30 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. Haire, Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Receptor Binding By H10 Influenza Viruses.
Nature V. 511 475 2014
PubMed-ID: 24870229  |  Reference-DOI: 10.1038/NATURE13443

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A, C, E
    Fragment: HA1, RESIDUES 17-340
    Organism Scientific: INFLUENZA A VIRUS (A/MALLARD/SWEDEN/51/2002 (H10N2))
    Organism Taxid: 757360
    Synonym: HAEMAGGLUTININ
 
Molecule 2 - HEMAGGLUTININ
    Chains: B, D, F
    Fragment: HA2, RESIDUES 341-513
    Organism Scientific: INFLUENZA A VIRUS (A/MALLARD/SWEDEN/51/2002 (H10N2))
    Organism Taxid: 757360
    Synonym: HAEMAGGLUTININ

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 44)

Asymmetric/Biological Unit (4, 44)
No.NameCountTypeFull Name
1BMA4Ligand/IonBETA-D-MANNOSE
2EDO18Ligand/Ion1,2-ETHANEDIOL
3MAN6Ligand/IonALPHA-D-MANNOSE
4NAG16Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (29, 29)

Asymmetric Unit (29, 29)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:269 , TRP A:283 , ARG A:300 , HOH A:2052 , HOH A:2069 , GLU B:69BINDING SITE FOR RESIDUE EDO A1326
02AC2SOFTWAREPRO A:299 , HOH A:2067 , LYS B:85 , ILE B:88 , THR B:89 , EDO B:1175 , TRP F:83BINDING SITE FOR RESIDUE EDO B1173
03AC3SOFTWARETHR A:301 , HOH A:2060 , HOH A:2063 , HOH A:2064 , PHE B:63 , EDO B:1175 , TRP F:83BINDING SITE FOR RESIDUE EDO B1174
04AC4SOFTWAREGLN C:269 , TRP C:283 , ARG C:284 , ARG C:300 , HOH C:2076 , GLU D:69BINDING SITE FOR RESIDUE EDO C1326
05AC5SOFTWARETRP D:83 , PRO E:299 , HOH E:2047 , LYS F:85 , THR F:89 , EDO F:1174BINDING SITE FOR RESIDUE EDO F1173
06AC6SOFTWARETRP D:83 , THR E:301 , HOH E:2045 , PHE F:63 , EDO F:1173BINDING SITE FOR RESIDUE EDO F1174
07AC7SOFTWARELEU E:70 , LEU E:177 , MET E:179 , PRO E:254 , ARG E:256 , VAL E:257 , SER E:258BINDING SITE FOR RESIDUE EDO E1326
08AC8SOFTWARELYS A:59 , ASP A:60 , ARG C:50BINDING SITE FOR RESIDUE EDO A1327
09AC9SOFTWARELEU A:70 , LEU A:177 , MET A:179 , PRO A:254 , ARG A:256 , VAL A:257 , SER A:258BINDING SITE FOR RESIDUE EDO A1328
10BC1SOFTWARELYS A:307 , HOH A:2066 , HOH A:2067 , PHE B:63 , ILE B:88 , EDO B:1173 , EDO B:1174 , SER F:87BINDING SITE FOR RESIDUE EDO B1175
11BC2SOFTWARELEU B:98 , MET B:102 , LEU D:98 , MET D:102 , GLN F:95 , LEU F:98 , MET F:102BINDING SITE FOR RESIDUE EDO F1175
12BC3SOFTWARESER C:57 , THR C:83 , TRP C:84 , ASP C:85 , HOH C:2035 , ASP E:49 , ARG E:50BINDING SITE FOR RESIDUE EDO C1327
13BC4SOFTWARELEU C:70 , MET C:179 , PRO C:254 , ARG C:256 , SER C:258BINDING SITE FOR RESIDUE EDO C1328
14BC5SOFTWAREGLY C:218 , ALA C:219 , ARG C:220 , SER E:203 , VAL E:204 , GLY E:205 , GLN E:210 , THR E:244 , SER E:246BINDING SITE FOR RESIDUE EDO E1327
15BC6SOFTWAREGLU D:72 , HIS D:75 , LYS E:111BINDING SITE FOR RESIDUE EDO D1173
16BC7SOFTWARELEU E:15 , GLY E:16 , HIS E:17 , ILE F:10 , ASN F:12 , GLY F:13 , TRP F:14BINDING SITE FOR RESIDUE EDO F1176
17BC8SOFTWARELEU E:154 , PHE E:161 , TYR E:195 , HIS E:247 , GLY E:249 , GLY E:250 , LEU E:251BINDING SITE FOR RESIDUE EDO E1328
18BC9SOFTWAREASN B:79 , GLN C:110 , GLU C:114 , HOH C:2047 , GLU D:64 , SER D:65BINDING SITE FOR RESIDUE EDO C1329
19CC1SOFTWAREASN A:38BINDING SITE FOR MONO-SACCHARIDE NAG A 420 BOUND TO ASN A 38
20CC2SOFTWAREARG A:169 , GLY A:240 , ASN A:242BINDING SITE FOR MONO-SACCHARIDE NAG A 401 BOUND TO ASN A 242
21CC3SOFTWAREHIS B:75 , ASN B:79 , ASN B:82 , HOH B:2020 , HOH B:2041 , HOH B:2042 , GLU C:114 , ARG C:264BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 201 THROUGH MAN B 207 BOUND TO ASN B 82
22CC4SOFTWAREGLU B:150 , ASN B:154 , THR B:156 , HOH B:2038BINDING SITE FOR MONO-SACCHARIDE NAG B 211 BOUND TO ASN B 154
23CC5SOFTWAREASN C:38 , LEU D:52BINDING SITE FOR MONO-SACCHARIDE NAG C 420 BOUND TO ASN C 38
24CC6SOFTWAREGLY C:240 , ASP C:241 , ASN C:242BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 401 THROUGH BMA C 403 BOUND TO ASN C 242
25CC7SOFTWAREARG C:300 , HIS D:75 , ASN D:79 , ASN D:82 , HOH D:2024 , HOH D:2026 , GLU E:114 , ARG E:264BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D 201 THROUGH MAN D 207 BOUND TO ASN D 82
26CC8SOFTWARESER D:147 , GLU D:150 , ASN D:154 , HOH D:2027BINDING SITE FOR MONO-SACCHARIDE NAG D 211 BOUND TO ASN D 154
27CC9SOFTWAREASN E:38 , THR E:40BINDING SITE FOR MONO-SACCHARIDE NAG E 420 BOUND TO ASN E 38
28DC1SOFTWAREPRO C:221 , ARG E:169 , GLY E:240 , ASP E:241 , ASN E:242BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG E 401 THROUGH NAG E 402 BOUND TO ASN E 242
29DC2SOFTWAREGLU A:114 , HIS F:75 , ASN F:79 , ASN F:82 , HOH F:2014BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG F 201 THROUGH MAN F 205 BOUND TO ASN F 82

(-) SS Bonds  (18, 18)

Asymmetric/Biological Unit
No.Residues
1A:14 -B:137
2A:52 -A:277
3A:64 -A:76
4A:97 -A:139
5A:281 -A:305
6B:144 -B:148
7C:14 -D:137
8C:52 -C:277
9C:64 -C:76
10C:97 -C:139
11C:281 -C:305
12D:144 -D:148
13E:14 -F:137
14E:52 -E:277
15E:64 -E:76
16E:97 -E:139
17E:281 -E:305
18F:144 -F:148

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4CYV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4CYV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4CYV)

(-) Exons   (0, 0)

(no "Exon" information available for 4CYV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:318
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327        
        E0YNJ7_9INFA     18 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhhhhh.ee..eeee..........eee.hhhhhhhhhh...eeeeee........ee....eeeeee..eee....eee.ee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee......ee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4cyv A   11 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  325
                                    20        30        40        50        60        70        80        90       100       110       120       129       139       149      158A|      167       177       187       197       207       217       227       237       247       257   ||  268       277       287       297       307       317        
                                                                                                                                              127A                            158A|                                                                                                    261|          276A                                                 
                                                                                                                                                                               158B                                                                                                     263                                                               


Chain B from PDB  Type:PROTEIN  Length:172
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:172
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510  
        E0YNJ7_9INFA    341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh...........eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyv B    1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain C from PDB  Type:PROTEIN  Length:319
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:319
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326         
        E0YNJ7_9INFA     17 LDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhhhhh.ee..eeee..............hhhhhhhhhhhh.eeeeee........ee....eeeeee..eee....eee.ee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyv C   10 LDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  325
                                    19        29        39        49        59        69        79        89        99       109       119       128       138       148       158||     166       176       186       196       206       216       226       236       246       256    || 267      276A       286       296       306       316         
                                                                                                                                               127A                            158A|                                                                                                    261|          276A                                                 
                                                                                                                                                                                158B                                                                                                     263                                                               


Chain D from PDB  Type:PROTEIN  Length:172
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:172
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510  
        E0YNJ7_9INFA    341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh...........eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyv D    1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  


Chain E from PDB  Type:PROTEIN  Length:319
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:319
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326         
        E0YNJ7_9INFA     17 LDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhh....ee..eeee..............hhhhhhhhhhhh.eeeeee........eeeee.eeeee....ee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeeee...eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyv E   10 LDKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  325
                                    19        29        39        49        59        69        79        89        99       109       119       128       138       148       158||     166       176       186       196       206       216       226       236       246       256    || 267      276A       286       296       306       316         
                                                                                                                                               127A                            158A|                                                                                                    261|          276A                                                 
                                                                                                                                                                                158B                                                                                                     263                                                               


Chain F from PDB  Type:PROTEIN  Length:172
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:172
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510  
        E0YNJ7_9INFA    341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh...........eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyv F    1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4CYV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4CYV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4CYV)

(-) Gene Ontology  (17, 17)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (E0YNJ7_9INFA | E0YNJ7)
molecular function
    GO:0046789    host cell surface receptor binding    Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
    GO:0075512    clathrin-dependent endocytosis of virus by host cell    Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
    GO:0075509    endocytosis involved in viral entry into host cell    Any endocytosis that is involved in the uptake of a virus into a host cell.
    GO:0039654    fusion of virus membrane with host endosome membrane    Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
    GO:0019064    fusion of virus membrane with host plasma membrane    Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
    GO:0039663    membrane fusion involved in viral entry into host cell    Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
    GO:0019065    receptor-mediated endocytosis of virus by host cell    Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0020002    host cell plasma membrane    The plasma membrane surrounding a host cell.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E0YNJ7_9INFA | E0YNJ7: 4cyw 4cyz 4cz0

(-) Related Entries Specified in the PDB File

4cyw STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOG 6- SLN
4cyz STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOG LSTA
4cz0 STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOG SU -3SLN
4d00 HAEMAGGLUTININ OF H10N8 INFLUENZA VIRUS ISOLATED FROM HUMANS IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN