4CYZ - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOG LSTA

Authors :   S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. H J. W. Mccauley, S. J. Gamblin, J. J. Skehel

Date :   16 Apr 14 (Deposition) - 11 Jun 14 (Release) - 30 Jul 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. Haire, Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Receptor Binding By H10 Influenza Viruses.
Nature V. 511 475 2014
PubMed-ID: 24870229 | Reference-DOI: 10.1038/NATURE13443

Molecule 1 - HEMAGGLUTININ
	Chains	:	A, C, E
	Fragment	:	HA1, RESIDUES 18-335
	Organism Scientific	:	INFLUENZA A VIRUS (A/MALLARD/SWEDEN/51/2002 (H10N2))
	Organism Taxid	:	757360
	Synonym	:	HAEMAGGLUTININ

Molecule 2 - HEMAGGLUTININ
	Chains	:	B, D, F
	Fragment	:	HA2, RESIDUES 341-513
	Organism Scientific	:	INFLUENZA A VIRUS (A/MALLARD/SWEDEN/51/2002 (H10N2))
	Organism Taxid	:	757360
	Synonym	:	HAEMAGGLUTININ

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (6, 38)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	EDO	11	Ligand/Ion	1,2-ETHANEDIOL
3	GAL	2	Ligand/Ion	BETA-D-GALACTOSE
4	MAN	5	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	15	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	SIA	2	Ligand/Ion	O-SIALIC ACID

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MAN B:207	BINDING SITE FOR RESIDUE NAG B 208
02	AC2	SOFTWARE	GLU B:150 , ASN B:154 , THR B:156	BINDING SITE FOR RESIDUE NAG B 211
03	AC3	SOFTWARE	GLN A:269 , TRP A:283 , ARG A:284 , ARG A:300 , HOH A:2104 , HOH A:2131 , GLU B:69	BINDING SITE FOR RESIDUE EDO A1326
04	AC4	SOFTWARE	PRO A:299 , EDO A:1327 , EDO A:1328 , LYS B:85 , THR B:89 , TRP F:83	BINDING SITE FOR RESIDUE EDO B1173
05	AC5	SOFTWARE	GLN A:295 , THR A:301 , CYS A:305 , PRO A:306 , LYS A:307 , TYR A:308 , EDO A:1328 , EDO B:1173	BINDING SITE FOR RESIDUE EDO A1327
06	AC6	SOFTWARE	THR A:301 , LYS A:307 , EDO A:1327 , HOH A:2116 , HOH A:2132 , PHE B:63 , EDO B:1173 , TRP F:83	BINDING SITE FOR RESIDUE EDO A1328
07	AC7	SOFTWARE	ASN B:79 , GLN C:110 , GLU C:114 , HOH C:2052 , HOH C:2095 , GLU D:64 , SER D:65	BINDING SITE FOR RESIDUE EDO C1326
08	AC8	SOFTWARE	GLN C:269 , ARG C:300 , HOH C:2123 , GLU D:69	BINDING SITE FOR RESIDUE EDO C1327
09	AC9	SOFTWARE	TRP D:83 , PRO E:299 , HOH E:2049 , LYS F:85 , ILE F:88 , THR F:89	BINDING SITE FOR RESIDUE EDO F1173
10	BC1	SOFTWARE	TRP D:83 , HOH D:2022 , THR E:301 , LYS E:307 , HOH E:2044 , HOH E:2048 , PHE F:63	BINDING SITE FOR RESIDUE EDO E1326
11	BC2	SOFTWARE	ARG E:284 , GLU F:69	BINDING SITE FOR RESIDUE EDO F1174
12	BC3	SOFTWARE	LEU E:70 , LEU E:177 , MET E:179 , PRO E:254 , ARG E:256 , VAL E:257 , SER E:258	BINDING SITE FOR RESIDUE EDO E1327
13	BC4	SOFTWARE	THR E:73 , PRO E:74 , ALA E:75 , ILE E:94 , CYS E:97	BINDING SITE FOR RESIDUE EDO E1328
14	BC5	SOFTWARE	ASN A:38 , ALA A:39 , THR A:40	BINDING SITE FOR MONO-SACCHARIDE NAG A 420 BOUND TO ASN A 38
15	BC6	SOFTWARE	ARG A:169 , GLY A:240 , ASP A:241 , ASN A:242	BINDING SITE FOR MONO-SACCHARIDE NAG A 401 BOUND TO ASN A 242
16	BC7	SOFTWARE	MET A:53 , LYS A:54 , HIS A:58 , ASP A:275 , CYS A:277 , HOH A:2106	BINDING SITE FOR LIGAND ASN A 276A BOUND TO ASN A 269
17	BC8	SOFTWARE	HOH A:2109 , HIS B:75 , ASN B:79 , ASN B:82 , NAG B:208 , HOH B:2061 , GLU C:114 , ARG C:264	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 201 THROUGH MAN B 207 BOUND TO ASN B 82
18	BC9	SOFTWARE	ASN C:38	BINDING SITE FOR MONO-SACCHARIDE NAG C 420 BOUND TO ASN C 38
19	CC1	SOFTWARE	ARG C:169 , GLY C:240 , ASN C:242	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 401 THROUGH NAG C 402 BOUND TO ASN C 242
20	CC2	SOFTWARE	ARG C:300 , HIS D:75 , ASN D:79 , ASN D:82 , HOH D:2025 , HOH D:2026 , GLU E:114	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D 201 THROUGH MAN D 207 BOUND TO ASN D 82
21	CC3	SOFTWARE	ARG E:169 , GLY E:240 , ASN E:242	BINDING SITE FOR MONO-SACCHARIDE NAG E 401 BOUND TO ASN E 242
22	CC4	SOFTWARE	GLU A:114 , GLY A:263 , ARG A:264 , HIS F:75 , ASN F:79 , ASN F:82 , HOH F:2020 , HOH F:2021	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG F 201 THROUGH MAN F 204 BOUND TO ASN F 82
23	CC5	SOFTWARE	TYR A:98 , THR A:135 , THR A:136 , LYS A:137 , TRP A:153 , HIS A:183 , GLU A:190 , GLN A:226 , GLY A:228	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A 409 THROUGH NAG A 411
24	CC6	SOFTWARE	TYR A:98 , THR A:135 , THR A:136 , LYS A:137 , TRP A:153 , HIS A:183 , GLU A:190 , GLN A:226 , GLY A:228 , TYR E:98 , THR E:135 , THR E:136 , LYS E:137 , TRP E:153 , HIS E:183 , GLU E:190 , LEU E:194 , GLN E:226 , GLY E:228 , HOH E:2026	BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E 409 THROUGH GAL E 410

Asymmetric/Biological Unit

No.	Residues
1	A:14	-	B:137
2	A:52	-	A:277
3	A:64	-	A:76
4	A:97	-	A:139
5	A:281	-	A:305
6	B:144	-	B:148
7	C:14	-	D:137
8	C:52	-	C:277
9	C:64	-	C:76
10	C:97	-	C:139
11	C:281	-	C:305
12	D:144	-	D:148
13	E:14	-	F:137
14	E:52	-	E:277
15	E:64	-	E:76
16	E:97	-	E:139
17	E:281	-	E:305
18	F:144	-	F:148

(no "Cis Peptide Bond" information available for 4CYZ)

(no "SAP(SNP)/Variant" information available for 4CYZ)

(no "PROSITE Motif" information available for 4CYZ)

(no "Exon" information available for 4CYZ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:318
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:318
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327        
        E0YNJ7_9INFA     18 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhhhhh.ee..eeee..............hhhhhhhhhhh..eeeeee........eeeee.eeeeee..eee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4cyz A   11 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  325
                                    20        30        40        50        60        70        80        90       100       110       120       129       139       149      158A|      167       177       187       197       207       217       227       237       247       257   ||  268       277       287       297       307       317        
                                                                                                                                              127A                            158A|                                                                                                    261|          276A                                                 
                                                                                                                                                                               158B                                                                                                     263

Chain B from PDB  Type:PROTEIN  Length:172
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:172
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510  
        E0YNJ7_9INFA    341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyz B    1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain C from PDB  Type:PROTEIN  Length:318
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:318
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327        
        E0YNJ7_9INFA     18 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee....hhhhhhhhhhhhhhhh.ee..eeee..........eee.hhhhhhhhhhhh.eeeeee........ee....eeeeee..eee....eee.ee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4cyz C   11 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  325
                                    20        30        40        50        60        70        80        90       100       110       120       129       139       149      158A|      167       177       187       197       207       217       227       237       247       257   ||  268       277       287       297       307       317        
                                                                                                                                              127A                            158A|                                                                                                    261|          276A                                                 
                                                                                                                                                                               158B                                                                                                     263

Chain D from PDB  Type:PROTEIN  Length:172
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:172
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510  
        E0YNJ7_9INFA    341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyz D    1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain E from PDB  Type:PROTEIN  Length:318
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:318
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327        
        E0YNJ7_9INFA     18 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  335
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee......eee.......eee..eee.ee......ee.....eee......hhhhhhhhhhh....ee..eeee..............hhhhhhhhhhhh.eeeeee........eeeee.eeeeee..eee....eeeeee.........eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeee....eeee....ee......eee..ee......ee.....eee...ee......eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4cyz E   11 DKICLGHHAVANGTIVKTLTNEQEEVTNATETVESTSLDRLCMKGRSHKDLGNCHPIGMLIGTPACDLHLTGTWDTLIERENAIAYCYPGATVNEEALRQKIMESGGISKISTGFTYGSSINSAGTTKACMRNGGNSFYAELKWLVSKSKGQNFPQTTNTYRNTDTAEHLIMWGIHHPSSTQEKNDLYGTQSLSISVGSSTYQSNFVPVVGARPQVNGQSGRIDFHWTLVQPGDNITFSHNGGLIAPSRVSKLIGRGLGIQSDAPIDNNCESKCFWRGGSINTRLPFQNLSPRTVGQCPKYVNKKSLMLATGMRNVPE  325
                                    20        30        40        50        60        70        80        90       100       110       120       129       139       149      158A|      167       177       187       197       207       217       227       237       247       257   ||  268       277       287       297       307       317        
                                                                                                                                              127A                            158A|                                                                                                    261|          276A                                                 
                                                                                                                                                                               158B                                                                                                     263

Chain F from PDB  Type:PROTEIN  Length:172
 aligned with E0YNJ7_9INFA | E0YNJ7 from UniProtKB/TrEMBL  Length:561

    Alignment length:172
                                   350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510  
        E0YNJ7_9INFA    341 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  512
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh.......hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4cyz F    1 GLFGAIAGFIENGWEGMVDGWYGFRHQNAQGTGQAADYKSTQAAIDQITGKLNRLIEKTNTEFESIESEFSEIEHQIGNVINWTKDSITDIWTYQAELLVAMENQHTIDMADSEMLNLYERVRKQLRQNAEEDGKGCFEIYHACDDSCMESIRNNTYDHSQYREEALLNRLN  172
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4CYZ)

(no "CATH Domain" information available for 4CYZ)

(no "Pfam Domain" information available for 4CYZ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (E0YNJ7_9INFA | E0YNJ7)

molecular function
	GO:0046789	host cell surface receptor binding	Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0019065	receptor-mediated endocytosis of virus by host cell	Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4cyz)

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	4cyz
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	E0YNJ7_9INFA \| E0YNJ7
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UniProtKB/TrEMBL
	E0YNJ7_9INFA \| E0YNJ7	:	4cyv 4cyw 4cz0

4cyv	STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ
4cyw	STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH HUMAN RECEPTOR ANALOG 6- SLN
4cz0	STRUCTURE OF THE A_MALLARD_SWEDEN_51_2002 H10 AVIAN HAEMMAGLUTININ IN COMPLEX WITH AVIAN RECEPTOR ANALOG SU -3SLN
4d00	HAEMAGGLUTININ OF H10N8 INFLUENZA VIRUS ISOLATED FROM HUMANS IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 38)

Sites (24, 24)

SS Bonds (18, 18)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (17, 17)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

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