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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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4D00
Asym. Unit
Info
Asym.Unit (501 KB)
Biol.Unit 1 (489 KB)
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(1)
Title
:
HAEMAGGLUTININ OF H10N8 INFLUENZA VIRUS ISOLATED FROM HUMANS IN COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN
Authors
:
X. Xiong, L. F. Haire, S. G. Vachieri, P. J. Collins, P. A. Walker, S. R. Ma Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Date
:
23 Apr 14 (Deposition) - 11 Jun 14 (Release) - 30 Jul 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Viral Protein, H10N8, Influenza, Sialic Acid, Glycoprotein, Virus Receptor, Avian Flu, Sialyllactosamine, Lsta
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. G. Vachieri, X. Xiong, P. J. Collins, P. A. Walker, S. R. Martin, L. F. Haire, Y. Zhang, J. W. Mccauley, S. J. Gamblin, J. J. Skehel
Receptor Binding By H10 Influenza Viruses.
Nature V. 511 475 2014
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3a: NICKEL (II) ION (NIa)
3b: NICKEL (II) ION (NIb)
3c: NICKEL (II) ION (NIc)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
4c: O-SIALIC ACID (SIAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NI
3
Ligand/Ion
NICKEL (II) ION
4
SIA
3
Ligand/Ion
O-SIALIC ACID
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:104 , GLU B:64 , ASN F:79 , NAG F:1174
BINDING SITE FOR RESIDUE NI A1321
02
AC2
SOFTWARE
ASN B:79 , NAG B:1176 , HOH B:2047 , GLU C:104 , GLU D:64
BINDING SITE FOR RESIDUE NI B1178
03
AC3
SOFTWARE
ASN D:79 , NAG D:1177 , GLU E:104 , GLU F:64
BINDING SITE FOR RESIDUE NI D1179
04
AC4
SOFTWARE
ASN A:28 , HOH A:2180 , LEU B:52
BINDING SITE FOR MONO-SACCHARIDE NAG A1320 BOUND TO ASN A 28
05
AC5
SOFTWARE
ARG A:162 , ASN A:235 , PRO E:214
BINDING SITE FOR MONO-SACCHARIDE NAG A1319 BOUND TO ASN A 235
06
AC6
SOFTWARE
HIS B:75 , ASN B:79 , ASN B:82 , NI B:1178 , HOH B:2050 , HOH B:2093 , HOH B:2094 , GLU C:104
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B1176 THROUGH NAG B1177 BOUND TO ASN B 82
07
AC7
SOFTWARE
ASN C:28 , THR C:311 , HOH C:2151
BINDING SITE FOR MONO-SACCHARIDE NAG C1320 BOUND TO ASN C 28
08
AC8
SOFTWARE
ARG C:162 , GLY C:233 , ASP C:234 , ASN C:235
BINDING SITE FOR MONO-SACCHARIDE NAG C1319 BOUND TO ASN C 235
09
AC9
SOFTWARE
HIS D:75 , ASN D:79 , ASN D:82 , NI D:1179 , HOH D:2080 , HOH D:2081 , GLU E:104
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG D1177 THROUGH NAG D1178 BOUND TO ASN D 82
10
BC1
SOFTWARE
ASN E:28 , THR E:311 , HOH E:2131
BINDING SITE FOR MONO-SACCHARIDE NAG E1320 BOUND TO ASN E 28
11
BC2
SOFTWARE
PRO C:214 , ARG E:162 , ASP E:234 , ASN E:235
BINDING SITE FOR MONO-SACCHARIDE NAG E1319 BOUND TO ASN E 235
12
BC3
SOFTWARE
GLU A:104 , ARG A:256 , NI A:1321 , HOH A:2087 , HIS F:75 , ASN F:79 , ASN F:82 , HOH F:2059
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG F1174 THROUGH NAG F1175 BOUND TO ASN F 82
13
BC4
SOFTWARE
TYR A:88 , GLY A:125 , THR A:126 , THR A:127 , ARG A:128 , TRP A:144 , HIS A:176 , GLU A:183 , LEU A:187 , GLN A:215 , GLY A:218 , GLN A:219 , HOH A:2066 , HOH A:2100 , HOH A:2102 , HOH A:2137
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA A1322 THROUGH NAG A1324
14
BC5
SOFTWARE
TYR A:88 , GLU A:104 , GLY A:125 , THR A:126 , THR A:127 , ARG A:128 , TRP A:144 , HIS A:176 , GLU A:183 , LEU A:187 , GLN A:215 , GLY A:218 , GLN A:219 , HOH A:2066 , HOH A:2100 , HOH A:2102 , HOH A:2137 , GLU B:64 , TYR C:88 , GLY C:125 , THR C:126 , THR C:127 , ARG C:128 , TRP C:144 , HIS C:176 , GLU C:183 , GLN C:215 , GLY C:218 , GLN C:219 , HOH C:2056 , HOH C:2073 , HOH C:2074 , HOH C:2078 , HOH C:3006 , ASN F:79 , NAG F:1174
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA C1321 THROUGH NAG C1323
15
BC6
SOFTWARE
ALA C:11 , TYR C:88 , GLY C:125 , THR C:126 , THR C:127 , ARG C:128 , TRP C:144 , HIS C:176 , GLU C:183 , GLN C:215 , GLY C:218 , GLN C:219 , GLU C:318 , HOH C:2056 , HOH C:2073 , HOH C:2074 , HOH C:2078 , HOH C:3006 , GLU D:15 , TYR E:88 , GLY E:125 , THR E:126 , THR E:127 , ARG E:128 , ASN E:136 , TRP E:144 , HIS E:176 , GLU E:183 , GLY E:218 , GLN E:219 , HOH E:2053 , HOH E:2075 , HOH E:2076 , HOH E:3002 , HOH E:3003
BINDING SITE FOR POLY-SACCHARIDE RESIDUES SIA E1321 THROUGH NAG E1323
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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Sorry, no Info available
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (501 KB)
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