Jena Library of Biological Macromolecules - Home Page [Image Library Home] [Image Library Entry]

Sequence, Chains, Asymmetric and Biological Units

Title HAEMAGGLUTININ OF H10N8 INFLUENZA VIRUS ISOLATED FROM HUMANS COMPLEX WITH HUMAN RECEPTOR ANALOGUE 6'SLN
Keywords VIRAL PROTEIN, H10N8, INFLUENZA, SIALIC ACID, GLYCOPROTEIN, RECEPTOR, AVIAN FLU, SIALYLLACTOSAMINE, LSTA
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   4D00     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   HAEMAGGLUTININ HA1  A 319 2444 0
2  Protein   HAEMAGGLUTININ HA1  B 175 1409 0
3  Protein   HAEMAGGLUTININ HA1  C 321 2457 0
4  Protein   HAEMAGGLUTININ HA1  D 176 1416 0
5  Protein   HAEMAGGLUTININ HA1  E 319 2444 0
6  Protein   HAEMAGGLUTININ HA1  F 173 1394 0
7  Ligand    G 3 0 46
8  Ligand    H 2 0 28
9  Ligand    I 3 0 46
10  Ligand    J 2 0 28
11  Ligand    K 3 0 46
12  Ligand    L 2 0 28
13  Ligand   HAEMAGGLUTININ HA1  A 3 0 29
14  Ligand   HAEMAGGLUTININ HA1  B 1 0 1
15  Ligand   HAEMAGGLUTININ HA1  C 2 0 28
16  Ligand   HAEMAGGLUTININ HA1  D 1 0 1
17  Ligand   HAEMAGGLUTININ HA1  E 2 0 28
18 Water     703 0 703
total       2210 11564 1012
Proteins
Unit 1 PRO0 ASP1 LYS2 ILE3 CYS4 LEU5 GLY6 HIS7 HIS8 ALA9 VAL10 ALA11 ASN12 GLY13 THR14 ILE15 VAL16 LYS17 THR18 LEU19 THR20 ASN21 GLU22 GLN23 GLU24 GLU25 VAL26 THR27 ASN28 ALA29 THR30 GLU31 THR32 VAL33 GLU34 SER35 THR36 GLY37 ILE38 ASN39 ARG40 LEU41 CYS42 MET43 LYS44 GLY45 ARG46 LYS47 HIS48 LYS49 ASP50 LEU51 GLY52 ASN53 CYS54 HIS55 PRO56 ILE57 GLY58 MET59 LEU60 ILE61 GLY62 THR63 PRO64 ALA65 CYS66 ASP67 LEU68 HIS69 LEU70 THR71 GLY72 MET73 TRP74 ASP75 THR76 LEU77 ILE78 GLU79 ARG80 GLU81 ASN82 ALA83 ILE84 ALA85 TYR86 CYS87 TYR88 PRO89 GLY90 ALA91 THR92 VAL93 ASN94 VAL95 GLU96 ALA97 LEU98 ARG99 GLN100 LYS101 ILE102 MET103 GLU104 SER105 GLY106 GLY107 ILE108 ASN109 LYS110 ILE111 SER112 THR113 GLY114 PHE115 THR116 TYR117 GLY118 SER119 SER120 ILE121 ASN122 SER123 ALA124 GLY125 THR126 THR127 ARG128 ALA129 CYS130 MET131 ARG132 ASN133 GLY134 GLY135 ASN136 SER137 PHE138 TYR139 ALA140 GLU141 LEU142 LYS143 TRP144 LEU145 VAL146 SER147 LYS148 SER149 LYS150 GLY151 GLN152 ASN153 PHE154 PRO155 GLN156 THR157 THR158 ASN159 THR160 TYR161 ARG162 ASN163 THR164 ASP165 THR166 ALA167 GLU168 HIS169 LEU170 ILE171 MET172 TRP173 GLY174 ILE175 HIS176 HIS177 PRO178 SER179 SER180 THR181 GLN182 GLU183 LYS184 ASN185 ASP186 LEU187 TYR188 GLY189 THR190 GLN191 SER192 LEU193 SER194 ILE195 SER196 VAL197 GLY198 SER199 SER200 THR201 TYR202 ARG203 ASN204 ASN205 PHE206 VAL207 PRO208 VAL209 VAL210 GLY211 ALA212 ARG213 PRO214 GLN215 VAL216 ASN217 GLY218 GLN219 SER220 GLY221 ARG222 ILE223 ASP224 PHE225 HIS226 TRP227 THR228 LEU229 VAL230 GLN231 PRO232 GLY233 ASP234 ASN235 ILE236 THR237 PHE238 SER239 HIS240 ASN241 GLY242 GLY243 LEU244 ILE245 ALA246 PRO247 SER248 ARG249 VAL250 SER251 LYS252 LEU253 ILE254 GLY255 ARG256 GLY257 LEU258 GLY259 ILE260 GLN261 SER262 ASP263 ALA264 PRO265 ILE266 ASP267 ASN268 ASN269 CYS270 GLU271 SER272 LYS273 CYS274 PHE275 TRP276 ARG277 GLY278 GLY279 SER280 ILE281 ASN282 THR283 ARG284 LEU285 PRO286 PHE287 GLN288 ASN289 LEU290 SER291 PRO292 ARG293 THR294 VAL295 GLY296 GLN297 CYS298 PRO299 LYS300 TYR301 VAL302 ASN303 ARG304 ARG305 SER306 LEU307 MET308 LEU309 ALA310 THR311 GLY312 MET313 ARG314 ASN315 VAL316 PRO317 GLU318
Unit 2 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 LEU10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 THR32 GLY33 GLN34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 ALA43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 VAL56 GLU57 LYS58 THR59 ASN60 THR61 GLU62 PHE63 GLU64 SER65 ILE66 GLU67 SER68 GLU69 PHE70 SER71 GLU72 ILE73 GLU74 HIS75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 LYS85 ASP86 SER87 ILE88 THR89 ASP90 ILE91 TRP92 THR93 TYR94 GLN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 MET110 ALA111 ASP112 SER113 GLU114 MET115 LEU116 ASN117 LEU118 TYR119 GLU120 ARG121 VAL122 ARG123 LYS124 GLN125 LEU126 ARG127 GLN128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 LYS135 GLY136 CYS137 PHE138 GLU139 ILE140 TYR141 HIS142 ALA143 CYS144 ASP145 ASP146 SER147 CYS148 MET149 GLU150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 SER160 GLN161 TYR162 ARG163 GLU164 GLU165 ALA166 LEU167 LEU168 ASN169 ARG170 LEU171 ASN172 ILE173 ASN174 PRO175
Unit 3 ALA-2 ASP-1 PRO0 ASP1 LYS2 ILE3 CYS4 LEU5 GLY6 HIS7 HIS8 ALA9 VAL10 ALA11 ASN12 GLY13 THR14 ILE15 VAL16 LYS17 THR18 LEU19 THR20 ASN21 GLU22 GLN23 GLU24 GLU25 VAL26 THR27 ASN28 ALA29 THR30 GLU31 THR32 VAL33 GLU34 SER35 THR36 GLY37 ILE38 ASN39 ARG40 LEU41 CYS42 MET43 LYS44 GLY45 ARG46 LYS47 HIS48 LYS49 ASP50 LEU51 GLY52 ASN53 CYS54 HIS55 PRO56 ILE57 GLY58 MET59 LEU60 ILE61 GLY62 THR63 PRO64 ALA65 CYS66 ASP67 LEU68 HIS69 LEU70 THR71 GLY72 MET73 TRP74 ASP75 THR76 LEU77 ILE78 GLU79 ARG80 GLU81 ASN82 ALA83 ILE84 ALA85 TYR86 CYS87 TYR88 PRO89 GLY90 ALA91 THR92 VAL93 ASN94 VAL95 GLU96 ALA97 LEU98 ARG99 GLN100 LYS101 ILE102 MET103 GLU104 SER105 GLY106 GLY107 ILE108 ASN109 LYS110 ILE111 SER112 THR113 GLY114 PHE115 THR116 TYR117 GLY118 SER119 SER120 ILE121 ASN122 SER123 ALA124 GLY125 THR126 THR127 ARG128 ALA129 CYS130 MET131 ARG132 ASN133 GLY134 GLY135 ASN136 SER137 PHE138 TYR139 ALA140 GLU141 LEU142 LYS143 TRP144 LEU145 VAL146 SER147 LYS148 SER149 LYS150 GLY151 GLN152 ASN153 PHE154 PRO155 GLN156 THR157 THR158 ASN159 THR160 TYR161 ARG162 ASN163 THR164 ASP165 THR166 ALA167 GLU168 HIS169 LEU170 ILE171 MET172 TRP173 GLY174 ILE175 HIS176 HIS177 PRO178 SER179 SER180 THR181 GLN182 GLU183 LYS184 ASN185 ASP186 LEU187 TYR188 GLY189 THR190 GLN191 SER192 LEU193 SER194 ILE195 SER196 VAL197 GLY198 SER199 SER200 THR201 TYR202 ARG203 ASN204 ASN205 PHE206 VAL207 PRO208 VAL209 VAL210 GLY211 ALA212 ARG213 PRO214 GLN215 VAL216 ASN217 GLY218 GLN219 SER220 GLY221 ARG222 ILE223 ASP224 PHE225 HIS226 TRP227 THR228 LEU229 VAL230 GLN231 PRO232 GLY233 ASP234 ASN235 ILE236 THR237 PHE238 SER239 HIS240 ASN241 GLY242 GLY243 LEU244 ILE245 ALA246 PRO247 SER248 ARG249 VAL250 SER251 LYS252 LEU253 ILE254 GLY255 ARG256 GLY257 LEU258 GLY259 ILE260 GLN261 SER262 ASP263 ALA264 PRO265 ILE266 ASP267 ASN268 ASN269 CYS270 GLU271 SER272 LYS273 CYS274 PHE275 TRP276 ARG277 GLY278 GLY279 SER280 ILE281 ASN282 THR283 ARG284 LEU285 PRO286 PHE287 GLN288 ASN289 LEU290 SER291 PRO292 ARG293 THR294 VAL295 GLY296 GLN297 CYS298 PRO299 LYS300 TYR301 VAL302 ASN303 ARG304 ARG305 SER306 LEU307 MET308 LEU309 ALA310 THR311 GLY312 MET313 ARG314 ASN315 VAL316 PRO317 GLU318
Unit 4 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 LEU10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 THR32 GLY33 GLN34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 ALA43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 VAL56 GLU57 LYS58 THR59 ASN60 THR61 GLU62 PHE63 GLU64 SER65 ILE66 GLU67 SER68 GLU69 PHE70 SER71 GLU72 ILE73 GLU74 HIS75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 LYS85 ASP86 SER87 ILE88 THR89 ASP90 ILE91 TRP92 THR93 TYR94 GLN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 MET110 ALA111 ASP112 SER113 GLU114 MET115 LEU116 ASN117 LEU118 TYR119 GLU120 ARG121 VAL122 ARG123 LYS124 GLN125 LEU126 ARG127 GLN128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 LYS135 GLY136 CYS137 PHE138 GLU139 ILE140 TYR141 HIS142 ALA143 CYS144 ASP145 ASP146 SER147 CYS148 MET149 GLU150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 SER160 GLN161 TYR162 ARG163 GLU164 GLU165 ALA166 LEU167 LEU168 ASN169 ARG170 LEU171 ASN172 ILE173 ASN174 PRO175 VAL176
Unit 5 PRO0 ASP1 LYS2 ILE3 CYS4 LEU5 GLY6 HIS7 HIS8 ALA9 VAL10 ALA11 ASN12 GLY13 THR14 ILE15 VAL16 LYS17 THR18 LEU19 THR20 ASN21 GLU22 GLN23 GLU24 GLU25 VAL26 THR27 ASN28 ALA29 THR30 GLU31 THR32 VAL33 GLU34 SER35 THR36 GLY37 ILE38 ASN39 ARG40 LEU41 CYS42 MET43 LYS44 GLY45 ARG46 LYS47 HIS48 LYS49 ASP50 LEU51 GLY52 ASN53 CYS54 HIS55 PRO56 ILE57 GLY58 MET59 LEU60 ILE61 GLY62 THR63 PRO64 ALA65 CYS66 ASP67 LEU68 HIS69 LEU70 THR71 GLY72 MET73 TRP74 ASP75 THR76 LEU77 ILE78 GLU79 ARG80 GLU81 ASN82 ALA83 ILE84 ALA85 TYR86 CYS87 TYR88 PRO89 GLY90 ALA91 THR92 VAL93 ASN94 VAL95 GLU96 ALA97 LEU98 ARG99 GLN100 LYS101 ILE102 MET103 GLU104 SER105 GLY106 GLY107 ILE108 ASN109 LYS110 ILE111 SER112 THR113 GLY114 PHE115 THR116 TYR117 GLY118 SER119 SER120 ILE121 ASN122 SER123 ALA124 GLY125 THR126 THR127 ARG128 ALA129 CYS130 MET131 ARG132 ASN133 GLY134 GLY135 ASN136 SER137 PHE138 TYR139 ALA140 GLU141 LEU142 LYS143 TRP144 LEU145 VAL146 SER147 LYS148 SER149 LYS150 GLY151 GLN152 ASN153 PHE154 PRO155 GLN156 THR157 THR158 ASN159 THR160 TYR161 ARG162 ASN163 THR164 ASP165 THR166 ALA167 GLU168 HIS169 LEU170 ILE171 MET172 TRP173 GLY174 ILE175 HIS176 HIS177 PRO178 SER179 SER180 THR181 GLN182 GLU183 LYS184 ASN185 ASP186 LEU187 TYR188 GLY189 THR190 GLN191 SER192 LEU193 SER194 ILE195 SER196 VAL197 GLY198 SER199 SER200 THR201 TYR202 ARG203 ASN204 ASN205 PHE206 VAL207 PRO208 VAL209 VAL210 GLY211 ALA212 ARG213 PRO214 GLN215 VAL216 ASN217 GLY218 GLN219 SER220 GLY221 ARG222 ILE223 ASP224 PHE225 HIS226 TRP227 THR228 LEU229 VAL230 GLN231 PRO232 GLY233 ASP234 ASN235 ILE236 THR237 PHE238 SER239 HIS240 ASN241 GLY242 GLY243 LEU244 ILE245 ALA246 PRO247 SER248 ARG249 VAL250 SER251 LYS252 LEU253 ILE254 GLY255 ARG256 GLY257 LEU258 GLY259 ILE260 GLN261 SER262 ASP263 ALA264 PRO265 ILE266 ASP267 ASN268 ASN269 CYS270 GLU271 SER272 LYS273 CYS274 PHE275 TRP276 ARG277 GLY278 GLY279 SER280 ILE281 ASN282 THR283 ARG284 LEU285 PRO286 PHE287 GLN288 ASN289 LEU290 SER291 PRO292 ARG293 THR294 VAL295 GLY296 GLN297 CYS298 PRO299 LYS300 TYR301 VAL302 ASN303 ARG304 ARG305 SER306 LEU307 MET308 LEU309 ALA310 THR311 GLY312 MET313 ARG314 ASN315 VAL316 PRO317 GLU318
Unit 6 GLY1 LEU2 PHE3 GLY4 ALA5 ILE6 ALA7 GLY8 PHE9 LEU10 GLU11 ASN12 GLY13 TRP14 GLU15 GLY16 MET17 VAL18 ASP19 GLY20 TRP21 TYR22 GLY23 PHE24 ARG25 HIS26 GLN27 ASN28 ALA29 GLN30 GLY31 THR32 GLY33 GLN34 ALA35 ALA36 ASP37 TYR38 LYS39 SER40 THR41 GLN42 ALA43 ALA44 ILE45 ASP46 GLN47 ILE48 THR49 GLY50 LYS51 LEU52 ASN53 ARG54 LEU55 VAL56 GLU57 LYS58 THR59 ASN60 THR61 GLU62 PHE63 GLU64 SER65 ILE66 GLU67 SER68 GLU69 PHE70 SER71 GLU72 ILE73 GLU74 HIS75 GLN76 ILE77 GLY78 ASN79 VAL80 ILE81 ASN82 TRP83 THR84 LYS85 ASP86 SER87 ILE88 THR89 ASP90 ILE91 TRP92 THR93 TYR94 GLN95 ALA96 GLU97 LEU98 LEU99 VAL100 ALA101 MET102 GLU103 ASN104 GLN105 HIS106 THR107 ILE108 ASP109 MET110 ALA111 ASP112 SER113 GLU114 MET115 LEU116 ASN117 LEU118 TYR119 GLU120 ARG121 VAL122 ARG123 LYS124 GLN125 LEU126 ARG127 GLN128 ASN129 ALA130 GLU131 GLU132 ASP133 GLY134 LYS135 GLY136 CYS137 PHE138 GLU139 ILE140 TYR141 HIS142 ALA143 CYS144 ASP145 ASP146 SER147 CYS148 MET149 GLU150 SER151 ILE152 ARG153 ASN154 ASN155 THR156 TYR157 ASP158 HIS159 SER160 GLN161 TYR162 ARG163 GLU164 GLU165 ALA166 LEU167 LEU168 ASN169 ARG170 LEU171 ASN172 ILE173
Ligands
Unit 7 NAG1 GAL2 SIA3
Unit 8 NAG1 NAG2
Unit 9 NAG1 GAL2 SIA3
Unit 10 NAG1 NAG2
Unit 11 NAG1 GAL2 SIA3
Unit 12 NAG1 NAG2
Unit 13 NAG1319 NAG1320 NI1321
Unit 14 NI1178
Unit 15 NAG1319 NAG1320
Unit 16 NI1179
Unit 17 NAG1319 NAG1320
Go to    [Image Library Home]    [Image Library Entry]
Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany