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(-) Description

Title :  THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A 53-NUCLEOTIDE RNA MOLECULE CONTAINING GAGUU REPEATS
 
Authors :  N. H. Hopcroft, A. L. Wendt, P. Gollnick, A. A. Antson
Date :  15 Jan 02  (Deposition) - 05 Apr 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K  (1x)
Biol. Unit 2:  L,M,N,O,P,Q,R,S,T,U,V,W  (1x)
Keywords :  Rna Binding Protein-Rna Complex, Transcription Attenuation, Rna-Binding Protein, Trp Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Hopcroft, A. L. Wendt, P. Gollnick, A. A. Antson
Specificity Of Trap-Rna Interactions: Crystal Structures Of Two Complexes With Different Rna Sequences
Acta Crystallogr. , Sect. D V. 58 615 2002
PubMed-ID: 11914485  |  Reference-DOI: 10.1107/S0907444902003189
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRP RNA-BINDING ATTENUATION PROTEIN (TRAP)
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTZSTMTRB
    Expression System Strain: SG62052/PGP1-2
    Expression System Taxid: 562
    Organism Scientific: BACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Other Details: TWO PROTEIN 11-MERS (CHAINS A TO K AND L TO V), RESIDUES 1 - 75 IN EACH CHAIN (SOME N- AND C-TERMINAL RESIDUES MISSING DUE TO DISORDER)
 
Molecule 2 - (GAGUU)10GAG 53-NUCLEOTIDE RNA
    Chains: W
    Other Details: SYNTHETIC RNA. IN-VITRO TRANSCRIPTION
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVW
Biological Unit 1 (1x): ABCDEFGHIJK            
Biological Unit 2 (1x):            LMNOPQRSTUVW

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric Unit (1, 22)
No.NameCountTypeFull Name
1TRP22Ligand/IonTRYPTOPHAN
Biological Unit 1 (1, 11)
No.NameCountTypeFull Name
1TRP11Ligand/IonTRYPTOPHAN
Biological Unit 2 (1, 11)
No.NameCountTypeFull Name
1TRP11Ligand/IonTRYPTOPHAN

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:23 , GLN A:47 , THR A:49 , THR A:52 , HOH A:2055 , HOH A:2074 , THR K:25 , ARG K:26 , GLY K:27 , ASP K:29 , THR K:30 , SER K:53BINDING SITE FOR RESIDUE TRP A 81
02AC2SOFTWARETHR A:25 , ARG A:26 , GLY A:27 , ASP A:29 , THR A:30 , SER A:53 , GLY B:23 , GLN B:47 , THR B:49 , THR B:52 , HOH B:2050BINDING SITE FOR RESIDUE TRP B 81
03AC3SOFTWARETHR B:25 , ARG B:26 , GLY B:27 , ASP B:29 , THR B:30 , SER B:53 , GLY C:23 , GLN C:47 , THR C:49 , THR C:52 , HOH C:2050 , HOH C:2069BINDING SITE FOR RESIDUE TRP C 81
04AC4SOFTWARETHR C:25 , ARG C:26 , GLY C:27 , ASP C:29 , THR C:30 , SER C:53 , GLY D:23 , GLN D:47 , THR D:49 , THR D:52 , HOH D:2056BINDING SITE FOR RESIDUE TRP D 81
05AC5SOFTWARETHR D:25 , ARG D:26 , GLY D:27 , ASP D:29 , THR D:30 , SER D:53 , GLY E:23 , GLN E:47 , THR E:49 , THR E:52 , HOH E:2063BINDING SITE FOR RESIDUE TRP E 81
06AC6SOFTWARETHR E:25 , ARG E:26 , GLY E:27 , ASP E:29 , THR E:30 , SER E:53 , GLY F:23 , GLN F:47 , THR F:49 , THR F:52 , HOH F:2042BINDING SITE FOR RESIDUE TRP F 81
07AC7SOFTWARETHR F:25 , ARG F:26 , GLY F:27 , ASP F:29 , THR F:30 , SER F:53 , GLY G:23 , GLN G:47 , THR G:49 , THR G:52 , HOH G:2047BINDING SITE FOR RESIDUE TRP G 81
08AC8SOFTWARETHR G:25 , ARG G:26 , GLY G:27 , ASP G:29 , THR G:30 , SER G:53 , GLY H:23 , GLN H:47 , THR H:49 , THR H:52 , HOH H:2046BINDING SITE FOR RESIDUE TRP H 81
09AC9SOFTWARETHR H:25 , ARG H:26 , GLY H:27 , ASP H:29 , THR H:30 , SER H:53 , GLY I:23 , GLN I:47 , THR I:49 , THR I:52 , HOH I:2047BINDING SITE FOR RESIDUE TRP I 81
10BC1SOFTWARETHR I:25 , ARG I:26 , GLY I:27 , ASP I:29 , THR I:30 , SER I:53 , GLY J:23 , GLN J:47 , THR J:49 , THR J:52 , HOH J:2071BINDING SITE FOR RESIDUE TRP J 81
11BC2SOFTWARETHR J:25 , ARG J:26 , GLY J:27 , ASP J:29 , THR J:30 , SER J:53 , GLY K:23 , GLN K:47 , THR K:49 , THR K:52 , HOH K:2057BINDING SITE FOR RESIDUE TRP K 81
12BC3SOFTWAREGLY L:23 , GLN L:47 , THR L:49 , THR L:52 , HOH L:2032 , THR M:25 , ARG M:26 , GLY M:27 , ASP M:29 , THR M:30 , SER M:53BINDING SITE FOR RESIDUE TRP L 81
13BC4SOFTWAREGLY M:23 , GLN M:47 , THR M:49 , THR M:52 , HOH M:2034 , THR N:25 , ARG N:26 , GLY N:27 , ASP N:29 , THR N:30 , SER N:53BINDING SITE FOR RESIDUE TRP M 81
14BC5SOFTWAREGLY N:23 , GLN N:47 , THR N:49 , THR N:52 , HOH N:2032 , THR O:25 , ARG O:26 , GLY O:27 , ASP O:29 , THR O:30 , SER O:53BINDING SITE FOR RESIDUE TRP N 81
15BC6SOFTWAREGLY O:23 , GLN O:47 , THR O:49 , THR O:52 , HOH O:2038 , THR P:25 , ARG P:26 , GLY P:27 , ASP P:29 , THR P:30 , SER P:53BINDING SITE FOR RESIDUE TRP O 81
16BC7SOFTWAREGLY P:23 , GLN P:47 , THR P:49 , THR P:52 , HOH P:2041 , THR Q:25 , ARG Q:26 , GLY Q:27 , ASP Q:29 , THR Q:30 , SER Q:53BINDING SITE FOR RESIDUE TRP P 81
17BC8SOFTWAREGLY Q:23 , ALA Q:46 , GLN Q:47 , THR Q:49 , THR Q:52 , HOH Q:2042 , THR R:25 , ARG R:26 , GLY R:27 , ASP R:29 , THR R:30 , SER R:53BINDING SITE FOR RESIDUE TRP Q 81
18BC9SOFTWAREGLY R:23 , ALA R:46 , GLN R:47 , THR R:49 , THR R:52 , HOH R:2056 , THR S:25 , ARG S:26 , GLY S:27 , ASP S:29 , THR S:30 , SER S:53BINDING SITE FOR RESIDUE TRP R 81
19CC1SOFTWAREGLY S:23 , GLN S:47 , THR S:49 , THR S:52 , HOH S:2038 , THR T:25 , ARG T:26 , GLY T:27 , ASP T:29 , THR T:30 , SER T:53BINDING SITE FOR RESIDUE TRP S 81
20CC2SOFTWAREGLY T:23 , GLN T:47 , THR T:49 , THR T:52 , HOH T:2045 , THR U:25 , ARG U:26 , GLY U:27 , ASP U:29 , THR U:30 , SER U:53BINDING SITE FOR RESIDUE TRP T 81
21CC3SOFTWAREGLY U:23 , GLN U:47 , THR U:49 , THR U:52 , HOH U:2035 , THR V:25 , ARG V:26 , GLY V:27 , ASP V:29 , THR V:30 , SER V:53BINDING SITE FOR RESIDUE TRP U 81
22CC4SOFTWARETHR L:25 , ARG L:26 , GLY L:27 , ASP L:29 , THR L:30 , SER L:53 , GLY V:23 , GLN V:47 , THR V:49 , THR V:52 , HOH V:2038BINDING SITE FOR RESIDUE TRP V 81

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GTF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GTF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GTF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GTF)

(-) Exons   (0, 0)

(no "Exon" information available for 1GTF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtfa_ A: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1gtfA00 A:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1gtf A   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         


Chain B from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:68
                                    14        24        34        44        54        64        
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfb_ B: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1gtfB00 B:7-74  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1gtf B   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    16        26        36        46        56        66        


Chain C from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    13        23        33        43        53        63        73
           MTRB_GEOSE     4 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtfc_ C: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfC00 C:6-75  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf C   6 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    15        25        35        45        55        65        75


Chain D from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtfd_ D: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1gtfD00 D:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1gtf D   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         


Chain E from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:68
                                    14        24        34        44        54        64        
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfe_ E: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1gtfE00 E:7-74  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1gtf E   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    16        26        36        46        56        66        


Chain F from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtff_ F: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1gtfF00 F:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1gtf F   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         


Chain G from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    13        23        33        43        53        63        73
           MTRB_GEOSE     4 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtfg_ G: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfG00 G:6-75  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf G   6 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    15        25        35        45        55        65        75


Chain H from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:68
                                    14        24        34        44        54        64        
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfh_ H: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1gtfH00 H:7-74  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1gtf H   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    16        26        36        46        56        66        


Chain I from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtfi_ I: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1gtfI00 I:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1gtf I   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         


Chain J from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:67
                                    14        24        34        44        54        64       
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE  71
               SCOP domains d1gtfj_ J: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1gtfJ00 J:7-73  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 1gtf J   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE  73
                                    16        26        36        46        56        66       


Chain K from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtfk_ K: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1gtfK00 K:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1gtf K   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         


Chain L from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfl_ L: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfL00 L:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf L   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain M from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1gtfm_ M: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1gtfM00 M:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1gtf M   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain N from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfn_ N: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfN00 N:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf N   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain O from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfo_ O: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfO00 O:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf O   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain P from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfp_ P: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfP00 P:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf P   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain Q from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfq_ Q: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfQ00 Q:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf Q   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain R from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfr_ R: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfR00 R:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf R   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain S from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfs_ S: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfS00 S:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf S   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain T from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtft_ T: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfT00 T:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf T   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain U from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfu_ U: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfU00 U:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf U   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain V from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1gtfv_ V: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1gtfV00 V:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1gtf V   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain W from PDB  Type:RNA  Length:44
                                                                            
                 1gtf W 101 GAGUGAGUGAGUGAGUGAGUGAGUGAGUGAGUGAGUGAGUGAGU 154
                               ||  112 ||  ||124|  ||  137 ||  ||149|   
                             104|  ||  ||  || 126  ||  ||  ||  || 151   
                              106  ||  ||  ||  | 129|  ||  ||  ||  |    
                                 109|  ||  ||  |  131  ||  ||  ||  |    
                                  111  ||  ||  |     134|  ||  ||  |    
                                     114|  ||  |      136  ||  ||  |    
                                      116  ||  |         139|  ||  |    
                                         119|  |          141  ||  |    
                                          121  |             144|  |    
                                             124              146  |
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 22)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 22)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: [code=2.60.40.50, no name defined] (14)
(-)
Bacillus stearothermophilus. Organism_taxid: 1422. (5)
1a1gtfA00A:7-75
1b1gtfD00D:7-75
1c1gtfL00L:5-74
1d1gtfN00N:5-74
1e1gtfO00O:5-74
1f1gtfP00P:5-74
1g1gtfQ00Q:5-74
1h1gtfR00R:5-74
1i1gtfS00S:5-74
1j1gtfT00T:5-74
1k1gtfU00U:5-74
1l1gtfV00V:5-74
1m1gtfF00F:7-75
1n1gtfJ00J:7-73
1o1gtfM00M:5-75
1p1gtfI00I:7-75
1q1gtfK00K:7-75
1r1gtfB00B:7-74
1s1gtfE00E:7-74
1t1gtfH00H:7-74
1u1gtfC00C:6-75
1v1gtfG00G:6-75

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GTF)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V   (MTRB_GEOSE | Q9X6J6)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  1gtf
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTRB_GEOSE | Q9X6J6: 1c9s 1gtn 1qaw 1utd 2exs 2ext 2zcz 2zd0 2zp8 2zp9 3aqd 3zzs 4v4f 5eeu 5eev 5eew 5eex 5eey 5eez 5ef0 5ef1 5ef2 5ef3

(-) Related Entries Specified in the PDB File

1c9s CRYSTAL STRUCTURE OF A COMPLEX OF TRP RNA -BINDINGATTENUATION PROTEIN WITH A 53-BASE SINGLE STRANDED RNACONTAINING ELEVEN GAG TRIPLETS SEPARATED BY AU DINUCLEOTIDES
1qaw REGULATORY FEATURES OF THE TRP OPERON AND THE CRYSTALSTRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN FROMBACILLUS STEAROTHERMOPHILUS.