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(-) Description

Title :  THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A 63-NUCLEOTIDE RNA MOLECULE CONTAINING GAGUUU REPEATS
 
Authors :  N. H. Hopcroft, A. Manfredo, A. L. Wendt, A. M. Brzozowski, P. Gollnick, A. A. Antson
Date :  08 Dec 03  (Deposition) - 15 Jan 04  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,Z,0,1,2,3,4,5,6,7,8,9
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K  (1x)
Biol. Unit 2:  L,M,N,O,P,Q,R,S,T,U,V,Z,0,1,2,3,4,5,6,7,8,9  (1x)
Keywords :  Rna Binding Protein, Transcription Regulation, Rna-Binding, Trp Rna Transcription Attenuation, Rna-Binding Protein, (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Hopcroft, A. Manfredo, A. L. Wendt, A. M. Brzozowski, P. Gollnick A. A. Antson
The Interaction Of Rna With Trap: The Role Of Triplet Repeats And Separating Spacer Nucleotides
J. Mol. Biol. V. 338 43 2004
PubMed-ID: 15050822  |  Reference-DOI: 10.1016/J.JMB.2004.02.038
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRANSCRIPTION ATTENUATION PROTEIN MTRB
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PTZSTMTRB
    Expression System Strain: SG62052/PGP1-2
    Expression System Taxid: 562
    Organism Scientific: BACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Other Details: TWO PROTEIN 11MERS (CHAINS A-K AND L-V)
    Synonym: TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN, TRP RNA-BINDING ATTENUATION PROTEIN, TRAP
 
Molecule 2 - 5'-R(*GP*UP*UP*UP*GP*AP)-3'
    Chains: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, Z
    Other Details: SYNTHETIC RNA. IN-VITRO TRANSCRIPTION
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021222324252627282930313233
Asymmetric Unit : ABCDEFGHIJKLMNOPQRSTUVZ0123456789
Biological Unit 1 (1x): ABCDEFGHIJK                      
Biological Unit 2 (1x):            LMNOPQRSTUVZ0123456789

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric Unit (1, 22)
No.NameCountTypeFull Name
1TRP22Ligand/IonTRYPTOPHAN
Biological Unit 1 (1, 11)
No.NameCountTypeFull Name
1TRP11Ligand/IonTRYPTOPHAN
Biological Unit 2 (1, 11)
No.NameCountTypeFull Name
1TRP11Ligand/IonTRYPTOPHAN

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:23 , GLN A:47 , THR A:49 , THR A:52 , HOH A:2039 , THR B:25 , ARG B:26 , GLY B:27 , ASP B:29 , THR B:30 , SER B:53BINDING SITE FOR RESIDUE TRP A 81
02AC2SOFTWAREGLY B:23 , GLN B:47 , THR B:49 , THR B:52 , HOH B:2028 , THR C:25 , ARG C:26 , GLY C:27 , ASP C:29 , THR C:30 , SER C:53BINDING SITE FOR RESIDUE TRP B 81
03AC3SOFTWAREGLY C:23 , GLN C:47 , THR C:49 , THR C:52 , HOH C:2028 , THR D:25 , ARG D:26 , GLY D:27 , ASP D:29 , THR D:30 , SER D:53BINDING SITE FOR RESIDUE TRP C 81
04AC4SOFTWAREGLY D:23 , GLN D:47 , THR D:49 , THR D:52 , HOH D:2034 , THR E:25 , ARG E:26 , GLY E:27 , ASP E:29 , THR E:30 , SER E:53BINDING SITE FOR RESIDUE TRP D 81
05AC5SOFTWAREGLY E:23 , GLN E:47 , THR E:49 , THR E:52 , HOH E:2036 , THR F:25 , ARG F:26 , GLY F:27 , ASP F:29 , THR F:30 , SER F:53BINDING SITE FOR RESIDUE TRP E 81
06AC6SOFTWAREGLY F:23 , GLN F:47 , THR F:49 , THR F:52 , HOH F:2036 , THR G:25 , ARG G:26 , GLY G:27 , ASP G:29 , THR G:30 , SER G:53BINDING SITE FOR RESIDUE TRP F 81
07AC7SOFTWAREGLY G:23 , GLN G:47 , THR G:49 , THR G:52 , HOH G:2037 , THR H:25 , ARG H:26 , GLY H:27 , ASP H:29 , THR H:30 , SER H:53BINDING SITE FOR RESIDUE TRP G 81
08AC8SOFTWAREGLY H:23 , GLN H:47 , THR H:49 , THR H:52 , HOH H:2022 , THR I:25 , ARG I:26 , GLY I:27 , ASP I:29 , THR I:30 , SER I:53BINDING SITE FOR RESIDUE TRP H 81
09AC9SOFTWAREGLY I:23 , GLN I:47 , THR I:49 , THR I:52 , HOH I:2016 , THR J:25 , ARG J:26 , GLY J:27 , ASP J:29 , THR J:30 , SER J:53BINDING SITE FOR RESIDUE TRP I 81
10BC1SOFTWAREGLY J:23 , GLN J:47 , THR J:49 , THR J:52 , HOH J:2024 , THR K:25 , ARG K:26 , GLY K:27 , ASP K:29 , THR K:30 , SER K:53BINDING SITE FOR RESIDUE TRP J 81
11BC2SOFTWARETHR A:25 , ARG A:26 , GLY A:27 , ASP A:29 , THR A:30 , SER A:53 , GLY K:23 , GLN K:47 , THR K:49 , THR K:52 , HOH K:2032BINDING SITE FOR RESIDUE TRP K 81
12BC3SOFTWAREGLY L:23 , GLN L:47 , THR L:49 , THR L:52 , HOH L:2032 , THR M:25 , ARG M:26 , GLY M:27 , ASP M:29 , THR M:30 , SER M:53BINDING SITE FOR RESIDUE TRP L 81
13BC4SOFTWAREGLY M:23 , GLN M:47 , THR M:49 , THR M:52 , HOH M:2028 , THR N:25 , ARG N:26 , GLY N:27 , ASP N:29 , THR N:30 , SER N:53BINDING SITE FOR RESIDUE TRP M 81
14BC5SOFTWAREGLY N:23 , GLN N:47 , THR N:49 , THR N:52 , HOH N:2029 , THR O:25 , ARG O:26 , GLY O:27 , ASP O:29 , THR O:30 , SER O:53BINDING SITE FOR RESIDUE TRP N 81
15BC6SOFTWAREGLY O:23 , GLN O:47 , THR O:49 , THR O:52 , HOH O:2019 , THR P:25 , ARG P:26 , GLY P:27 , ASP P:29 , THR P:30 , SER P:53BINDING SITE FOR RESIDUE TRP O 81
16BC7SOFTWAREGLY P:23 , GLN P:47 , THR P:49 , THR P:52 , HOH P:2045 , THR Q:25 , ARG Q:26 , GLY Q:27 , ASP Q:29 , THR Q:30 , SER Q:53BINDING SITE FOR RESIDUE TRP P 81
17BC8SOFTWAREGLY Q:23 , HIS Q:33 , GLN Q:47 , THR Q:49 , THR Q:52 , HOH Q:2020 , THR R:25 , ARG R:26 , GLY R:27 , ASP R:29 , THR R:30 , SER R:53BINDING SITE FOR RESIDUE TRP Q 81
18BC9SOFTWAREGLY R:23 , GLN R:47 , THR R:49 , THR R:52 , HOH R:2021 , THR S:25 , ARG S:26 , GLY S:27 , ASP S:29 , THR S:30 , SER S:53BINDING SITE FOR RESIDUE TRP R 81
19CC1SOFTWAREGLY S:23 , GLN S:47 , THR S:49 , THR S:52 , HOH S:2023 , THR T:25 , ARG T:26 , GLY T:27 , ASP T:29 , THR T:30 , SER T:53BINDING SITE FOR RESIDUE TRP S 81
20CC2SOFTWAREGLY T:23 , HIS T:33 , GLN T:47 , THR T:49 , THR T:52 , HOH T:2022 , THR U:25 , ARG U:26 , GLY U:27 , ASP U:29 , THR U:30 , SER U:53BINDING SITE FOR RESIDUE TRP T 81
21CC3SOFTWAREGLY U:23 , HIS U:33 , GLN U:47 , THR U:49 , THR U:52 , HOH U:2035 , THR V:25 , ARG V:26 , GLY V:27 , ASP V:29 , THR V:30 , SER V:53BINDING SITE FOR RESIDUE TRP U 81
22CC4SOFTWARETHR L:25 , ARG L:26 , GLY L:27 , ASP L:29 , THR L:30 , SER L:53 , GLY V:23 , HIS V:33 , GLN V:47 , THR V:49 , THR V:52 , HOH V:2019BINDING SITE FOR RESIDUE TRP V 81

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1UTD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1UTD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1UTD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1UTD)

(-) Exons   (0, 0)

(no "Exon" information available for 1UTD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 0 from PDB  Type:RNA  Length:6
                                      
                 1utd 0 101 GUUUGA 106


Chain 1 from PDB  Type:DNA/RNA  Length:3
                                   
                 1utd 1 101 GUA 106
                             ||
                           102|
                            106


Chain 2 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 2 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain 3 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 3 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain 4 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 4 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain 5 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 5 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain 6 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 6 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain 7 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 7 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain 8 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 8 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain 9 from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd 9 101 GUGA 106
                             || 
                             || 
                           102| 
                            105 


Chain A from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utda_ A: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdA00 A:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd A   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain B from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdb_ B: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdB00 B:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd B   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain C from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdc_ C: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdC00 C:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd C   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain D from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdd_ D: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdD00 D:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd D   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain E from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utde_ E: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdE00 E:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd E   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain F from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdf_ F: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdF00 F:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd F   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain G from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdg_ G: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdG00 G:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd G   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain H from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdh_ H: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdH00 H:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd H   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain I from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdi_ I: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdI00 I:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd I   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain J from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdj_ J: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdJ00 J:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd J   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain K from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdk_ K: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdK00 K:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd K   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain L from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdl_ L: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdL00 L:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd L   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain M from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdm_ M: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdM00 M:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd M   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain N from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdn_ N: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdN00 N:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd N   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain O from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdo_ O: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdO00 O:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd O   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain P from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdp_ P: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdP00 P:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd P   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain Q from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdq_ Q: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdQ00 Q:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee.eeeeee..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd Q   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain R from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1utdr_ R: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1utdR00 R:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1utd R   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 


Chain S from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utds_ S: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdS00 S:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd S   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain T from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdt_ T: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdT00 T:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd T   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain U from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdu_ U: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdU00 U:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd U   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain V from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1utdv_ V: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1utdV00 V:5-74  [code=2.60.40.50, no name defined]                     CATH domains
           Pfam domains (1) TrpBP-1utdV01 V:5-74                                                   Pfam domains (1)
           Pfam domains (2) TrpBP-1utdV02 V:5-74                                                   Pfam domains (2)
           Pfam domains (3) TrpBP-1utdV03 V:5-74                                                   Pfam domains (3)
           Pfam domains (4) TrpBP-1utdV04 V:5-74                                                   Pfam domains (4)
           Pfam domains (5) TrpBP-1utdV05 V:5-74                                                   Pfam domains (5)
           Pfam domains (6) TrpBP-1utdV06 V:5-74                                                   Pfam domains (6)
           Pfam domains (7) TrpBP-1utdV07 V:5-74                                                   Pfam domains (7)
           Pfam domains (8) TrpBP-1utdV08 V:5-74                                                   Pfam domains (8)
           Pfam domains (9) TrpBP-1utdV09 V:5-74                                                   Pfam domains (9)
          Pfam domains (10) TrpBP-1utdV10 V:5-74                                                   Pfam domains (10)
          Pfam domains (11) TrpBP-1utdV11 V:5-74                                                   Pfam domains (11)
          Pfam domains (12) TrpBP-1utdV12 V:5-74                                                   Pfam domains (12)
          Pfam domains (13) TrpBP-1utdV13 V:5-74                                                   Pfam domains (13)
          Pfam domains (14) TrpBP-1utdV14 V:5-74                                                   Pfam domains (14)
          Pfam domains (15) TrpBP-1utdV15 V:5-74                                                   Pfam domains (15)
          Pfam domains (16) TrpBP-1utdV16 V:5-74                                                   Pfam domains (16)
          Pfam domains (17) TrpBP-1utdV17 V:5-74                                                   Pfam domains (17)
          Pfam domains (18) TrpBP-1utdV18 V:5-74                                                   Pfam domains (18)
          Pfam domains (19) TrpBP-1utdV19 V:5-74                                                   Pfam domains (19)
          Pfam domains (20) TrpBP-1utdV20 V:5-74                                                   Pfam domains (20)
          Pfam domains (21) TrpBP-1utdV21 V:5-74                                                   Pfam domains (21)
          Pfam domains (22) TrpBP-1utdV22 V:5-74                                                   Pfam domains (22)
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1utd V   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74


Chain Z from PDB  Type:DNA/RNA  Length:4
                                    
                 1utd Z 101 GUGA 106
                             || 
                           102| 
                            105
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 22)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 22)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: [code=2.60.40.50, no name defined] (14)
(-)
Bacillus stearothermophilus. Organism_taxid: 1422. (5)
1a1utdA00A:5-74
1b1utdC00C:5-74
1c1utdE00E:5-74
1d1utdF00F:5-74
1e1utdG00G:5-74
1f1utdI00I:5-74
1g1utdK00K:5-74
1h1utdM00M:5-74
1i1utdN00N:5-74
1j1utdP00P:5-74
1k1utdS00S:5-74
1l1utdT00T:5-74
1m1utdU00U:5-74
1n1utdV00V:5-74
1o1utdB00B:5-75
1p1utdD00D:5-75
1q1utdH00H:5-75
1r1utdJ00J:5-75
1s1utdL00L:5-75
1t1utdO00O:5-75
1u1utdQ00Q:5-75
1v1utdR00R:5-75

(-) Pfam Domains  (1, 22)

Asymmetric Unit
(-)
Clan: no clan defined [family: TrpBP] (7)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V   (MTRB_GEOSE | Q9X6J6)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  1utd
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  MTRB_GEOSE | Q9X6J6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTRB_GEOSE | Q9X6J6: 1c9s 1gtf 1gtn 1qaw 2exs 2ext 2zcz 2zd0 2zp8 2zp9 3aqd 3zzs 4v4f 5eeu 5eev 5eew 5eex 5eey 5eez 5ef0 5ef1 5ef2 5ef3

(-) Related Entries Specified in the PDB File

1c9s CRYSTAL STRUCTURE OF A COMPLEX OF TRP RNA -BINDINGATTENUATION PROTEIN WITH A 53-BASE SINGLE STRANDED RNACONTAINING ELEVEN GAG TRIPLETS SEPARATED BY AU DINUCLEOTIDES
1gtf THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A 53- NUCLEOTIDE RNA MOLECULE CONTAINING GAGUU REPEATS
1gtn STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO AN RNA MOLECULE CONTAINING 11 GAGCC REPEATS
1qaw REGULATORY FEATURES OF THE TRP OPERON AND THE CRYSTALSTRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN FROMBACILLUS STEAROTHERMOPHILUS.
1utf THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A RNA MOLECULE CONTAINING UAGAU REPEATS (PART 1)
1utv THE STRUCTURE OF THE TRP RNA-BINDING ATTENUATION PROTEIN (TRAP) BOUND TO A RNA MOLECULE CONTAINING UAGAU REPEATS (PART 2)