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(-) Description

Title :  CRYSTAL STRUCTURE OF A COMPLEX OF TRP RNA-BINDING ATTENUATION PROTEIN WITH A 53-BASE SINGLE STRANDED RNA CONTAINING ELEVEN GAG TRIPLETS SEPARATED BY AU DINUCLEOTIDES
 
Authors :  A. A. Antson, E. J. Dodson, G. G. Dodson, R. B. Greaves, X. -P. Chen, P. Gollnick
Date :  03 Aug 99  (Deposition) - 15 Sep 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W
Biol. Unit 1:  A,B,C,D,E,F,G,H,I,J,K  (1x)
Biol. Unit 2:  L,M,N,O,P,Q,R,S,T,U,V,W  (1x)
Keywords :  Trap, Protein-Rna Complex, Transcription, Single Stranded Rna, Rna Binding Protein/Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. A. Antson, E. J. Dodson, G. Dodson, R. B. Greaves, X. Chen, P. Gollnick
Structure Of The Trp Rna-Binding Attenuation Protein, Trap, Bound To Rna.
Nature V. 401 235 1999
PubMed-ID: 10499579  |  Reference-DOI: 10.1038/45730
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SINGLE STRANDED RNA (55-MER)
    ChainsW
    EngineeredYES
    Other DetailsIN-VITRO TRANSCRIPTION
    SyntheticYES
 
Molecule 2 - TRP RNA-BINDING ATTENUATION PROTEIN
    ChainsA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTZSTMTRB
    Expression System StrainSG62052/PGP1-2
    Expression System Taxid562
    Organism ScientificGEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid1422

 Structural Features

(-) Chains, Units

  1234567891011121314151617181920212223
Asymmetric Unit ABCDEFGHIJKLMNOPQRSTUVW
Biological Unit 1 (1x)ABCDEFGHIJK            
Biological Unit 2 (1x)           LMNOPQRSTUVW

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 23)

Asymmetric Unit (1, 23)
No.NameCountTypeFull Name
1TRP23Ligand/IonTRYPTOPHAN
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1TRP12Ligand/IonTRYPTOPHAN
Biological Unit 2 (1, 11)
No.NameCountTypeFull Name
1TRP11Ligand/IonTRYPTOPHAN

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:23 , GLN A:47 , THR A:49 , THR A:52 , HOH A:186 , THR K:25 , ARG K:26 , GLY K:27 , ASP K:29 , THR K:30 , SER K:53BINDING SITE FOR RESIDUE TRP A 81
02AC2SOFTWAREALA A:28 , ASP A:29 , HOH A:182 , HOH A:192 , HOH A:206 , THR B:25 , ARG B:26 , ARG B:31 , HIS B:33 , HIS B:51 , HOH B:87BINDING SITE FOR RESIDUE TRP A 181
03AC3SOFTWARETHR A:25 , ARG A:26 , GLY A:27 , ASP A:29 , THR A:30 , SER A:53 , GLY B:23 , GLN B:47 , THR B:49 , HIS B:51 , THR B:52 , HOH B:82BINDING SITE FOR RESIDUE TRP B 81
04AC4SOFTWARETHR B:25 , ARG B:26 , GLY B:27 , ASP B:29 , THR B:30 , SER B:53 , GLY C:23 , GLN C:47 , THR C:49 , THR C:52 , HOH C:84BINDING SITE FOR RESIDUE TRP C 81
05AC5SOFTWARETHR C:25 , ARG C:26 , GLY C:27 , ASP C:29 , THR C:30 , SER C:53 , GLY D:23 , GLN D:47 , THR D:49 , THR D:52 , HOH D:84BINDING SITE FOR RESIDUE TRP D 81
06AC6SOFTWARETHR D:25 , ARG D:26 , GLY D:27 , ASP D:29 , THR D:30 , SER D:53 , GLY E:23 , GLN E:47 , THR E:49 , THR E:52 , HOH E:82BINDING SITE FOR RESIDUE TRP E 81
07AC7SOFTWARETHR E:25 , ARG E:26 , GLY E:27 , ASP E:29 , THR E:30 , SER E:53 , GLY F:23 , GLN F:47 , THR F:49 , THR F:52 , HOH F:87BINDING SITE FOR RESIDUE TRP F 81
08AC8SOFTWARETHR F:25 , ARG F:26 , GLY F:27 , ASP F:29 , THR F:30 , SER F:53 , GLY G:23 , GLN G:47 , THR G:49 , THR G:52 , HOH G:86BINDING SITE FOR RESIDUE TRP G 81
09AC9SOFTWARETHR G:25 , ARG G:26 , GLY G:27 , ASP G:29 , THR G:30 , SER G:53 , GLY H:23 , GLN H:47 , THR H:49 , THR H:52 , HOH H:85BINDING SITE FOR RESIDUE TRP H 81
10BC1SOFTWARETHR H:25 , ARG H:26 , GLY H:27 , ASP H:29 , THR H:30 , SER H:53 , GLY I:23 , GLN I:47 , THR I:49 , THR I:52 , HOH I:85BINDING SITE FOR RESIDUE TRP I 81
11BC2SOFTWARETHR I:25 , ARG I:26 , GLY I:27 , ASP I:29 , THR I:30 , SER I:53 , GLY J:23 , GLN J:47 , THR J:49 , HIS J:51 , THR J:52 , HOH J:88BINDING SITE FOR RESIDUE TRP J 81
12BC3SOFTWARETHR J:25 , ARG J:26 , GLY J:27 , ASP J:29 , THR J:30 , SER J:53 , GLY K:23 , GLN K:47 , THR K:49 , THR K:52 , HOH K:83BINDING SITE FOR RESIDUE TRP K 81
13BC4SOFTWAREGLY L:23 , GLN L:47 , THR L:49 , THR L:52 , HOH L:83 , THR M:25 , ARG M:26 , GLY M:27 , ASP M:29 , THR M:30 , SER M:53BINDING SITE FOR RESIDUE TRP L 81
14BC5SOFTWAREGLY M:23 , GLN M:47 , THR M:49 , THR M:52 , HOH M:84 , THR N:25 , ARG N:26 , GLY N:27 , ASP N:29 , THR N:30 , SER N:53BINDING SITE FOR RESIDUE TRP M 81
15BC6SOFTWAREGLY N:23 , GLN N:47 , THR N:49 , THR N:52 , HOH N:87 , THR O:25 , ARG O:26 , GLY O:27 , ASP O:29 , THR O:30 , SER O:53BINDING SITE FOR RESIDUE TRP N 81
16BC7SOFTWAREGLY O:23 , GLN O:47 , THR O:49 , THR O:52 , HOH O:83 , THR P:25 , ARG P:26 , GLY P:27 , ASP P:29 , THR P:30 , SER P:53BINDING SITE FOR RESIDUE TRP O 81
17BC8SOFTWAREGLY P:23 , GLN P:47 , THR P:49 , THR P:52 , HOH P:84 , THR Q:25 , ARG Q:26 , GLY Q:27 , ASP Q:29 , THR Q:30 , SER Q:53BINDING SITE FOR RESIDUE TRP P 81
18BC9SOFTWAREGLY Q:23 , GLN Q:47 , THR Q:49 , THR Q:52 , HOH Q:82 , THR R:25 , ARG R:26 , GLY R:27 , ASP R:29 , THR R:30 , SER R:53BINDING SITE FOR RESIDUE TRP Q 81
19CC1SOFTWAREGLY R:23 , GLN R:47 , THR R:49 , THR R:52 , HOH R:84 , THR S:25 , ARG S:26 , GLY S:27 , ASP S:29 , THR S:30 , SER S:53BINDING SITE FOR RESIDUE TRP R 81
20CC2SOFTWAREGLY S:23 , GLN S:47 , THR S:49 , THR S:52 , HOH S:84 , THR T:25 , ARG T:26 , GLY T:27 , ASP T:29 , THR T:30 , SER T:53BINDING SITE FOR RESIDUE TRP S 81
21CC3SOFTWAREGLY T:23 , GLN T:47 , THR T:49 , HIS T:51 , THR T:52 , HOH T:91 , THR U:25 , ARG U:26 , GLY U:27 , ASP U:29 , THR U:30 , SER U:53BINDING SITE FOR RESIDUE TRP T 81
22CC4SOFTWAREGLY U:23 , ALA U:46 , GLN U:47 , THR U:49 , THR U:52 , HOH U:85 , THR V:25 , ARG V:26 , GLY V:27 , ASP V:29 , THR V:30 , SER V:53BINDING SITE FOR RESIDUE TRP U 81
23CC5SOFTWARETHR L:25 , ARG L:26 , GLY L:27 , ASP L:29 , THR L:30 , SER L:53 , GLY V:23 , GLN V:47 , THR V:49 , HIS V:51 , THR V:52 , HOH V:86BINDING SITE FOR RESIDUE TRP V 81

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1C9S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1C9S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1C9S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1C9S)

(-) Exons   (0, 0)

(no "Exon" information available for 1C9S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9sa_ A: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1c9sA00 A:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1c9s A   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         

Chain B from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:68
                                    14        24        34        44        54        64        
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sb_ B: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1c9sB00 B:7-74  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1c9s B   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    16        26        36        46        56        66        

Chain C from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    13        23        33        43        53        63         
           MTRB_GEOSE     4 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sc_ C: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1c9sC00 C:6-74  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1c9s C   6 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    15        25        35        45        55        65         

Chain D from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9sd_ D: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1c9sD00 D:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1c9s D   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         

Chain E from PDB  Type:PROTEIN  Length:68
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:68
                                    14        24        34        44        54        64        
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9se_ E: Trp RNA-binding attenuation protein (TRAP)                SCOP domains
               CATH domains 1c9sE00 E:7-74  [code=2.60.40.50, no name defined]                   CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                 1c9s E   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    16        26        36        46        56        66        

Chain F from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9sf_ F: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1c9sF00 F:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1c9s F   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         

Chain G from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    13        23        33        43        53        63        73
           MTRB_GEOSE     4 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9sg_ G: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sG00 G:6-75  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s G   6 NSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    15        25        35        45        55        65        75

Chain H from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9sh_ H: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1c9sH00 H:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1c9s H   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         

Chain I from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9si_ I: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1c9sI00 I:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1c9s I   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         

Chain J from PDB  Type:PROTEIN  Length:67
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:67
                                    14        24        34        44        54        64       
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE  71
               SCOP domains d1c9sj_ J: Trp RNA-binding attenuation protein (TRAP)               SCOP domains
               CATH domains 1c9sJ00 J:7-73  [code=2.60.40.50, no name defined]                  CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 1c9s J   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESE  73
                                    16        26        36        46        56        66       

Chain K from PDB  Type:PROTEIN  Length:69
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:69
                                    14        24        34        44        54        64         
           MTRB_GEOSE     5 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9sk_ K: Trp RNA-binding attenuation protein (TRAP)                 SCOP domains
               CATH domains 1c9sK00 K:7-75  [code=2.60.40.50, no name defined]                    CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 1c9s K   7 SDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    16        26        36        46        56        66         

Chain L from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sl_ L: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sL00 L:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s L   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain M from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9sm_ M: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1c9sM00 M:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1c9s M   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 

Chain N from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sn_ N: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sN00 N:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s N   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain O from PDB  Type:PROTEIN  Length:71
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:71
                                    12        22        32        42        52        62        72 
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  73
               SCOP domains d1c9so_ O: Trp RNA-binding attenuation protein (TRAP)                   SCOP domains
               CATH domains 1c9sO00 O:5-75  [code=2.60.40.50, no name defined]                      CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 1c9s O   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEGK  75
                                    14        24        34        44        54        64        74 

Chain P from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sp_ P: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sP00 P:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s P   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain Q from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sq_ Q: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sQ00 Q:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s Q   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain R from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sr_ R: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sR00 R:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s R   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain S from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9ss_ S: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sS00 S:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s S   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain T from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9st_ T: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sT00 T:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s T   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain U from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9su_ U: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sU00 U:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s U   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain V from PDB  Type:PROTEIN  Length:70
 aligned with MTRB_GEOSE | Q9X6J6 from UniProtKB/Swiss-Prot  Length:74

    Alignment length:70
                                    12        22        32        42        52        62        72
           MTRB_GEOSE     3 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  72
               SCOP domains d1c9sv_ V: Trp RNA-binding attenuation protein (TRAP)                  SCOP domains
               CATH domains 1c9sV00 V:5-74  [code=2.60.40.50, no name defined]                     CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee....eeeeeee......eeeeeee....eeeee....eeeeeee..eeeee..eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                 1c9s V   5 TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSAIKVRGKAYIQTRHGVIESEG  74
                                    14        24        34        44        54        64        74

Chain W from PDB  Type:RNA  Length:55
                                                                                       
                 1c9s W 101 GAUGAGAUGAGAUGAGAUGAGAUGAGAUGAGAUGAGAUGAGAUGAGAUGAGAUGA 155
                                   110       120       130       140       150     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 22)

Asymmetric Unit

(-) CATH Domains  (1, 22)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
1a1c9sA00A:7-75
1b1c9sC00C:6-74
1c1c9sL00L:5-74
1d1c9sN00N:5-74
1e1c9sP00P:5-74
1f1c9sQ00Q:5-74
1g1c9sR00R:5-74
1h1c9sS00S:5-74
1i1c9sT00T:5-74
1j1c9sU00U:5-74
1k1c9sV00V:5-74
1l1c9sJ00J:7-73
1m1c9sD00D:7-75
1n1c9sM00M:5-75
1o1c9sO00O:5-75
1p1c9sF00F:7-75
1q1c9sH00H:7-75
1r1c9sI00I:7-75
1s1c9sK00K:7-75
1t1c9sB00B:7-74
1u1c9sE00E:7-74
1v1c9sG00G:6-75

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1C9S)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V   (MTRB_GEOSE | Q9X6J6)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006353    DNA-templated transcription, termination    The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MTRB_GEOSE | Q9X6J61gtf 1gtn 1qaw 1utd 2exs 2ext 2zcz 2zd0 2zp8 2zp9 3aqd 3zzs 4v4f 5eeu 5eev 5eew 5eex 5eey 5eez 5ef0 5ef1 5ef2 5ef3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1C9S)