Chain A from PDB Type:PROTEIN Length:327
aligned with DPOLL_HUMAN | Q9UGP5 from UniProtKB/Swiss-Prot Length:575
Alignment length:327
258 268 278 288 298 308 318 328 338 348 358 368 378 388 398 408 418 428 438 448 458 468 478 488 498 508 518 528 538 548 558 568
DPOLL_HUMAN 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
SCOP domains d1rzta1 A:249-328 DNA polymerase lambda d1rzta2 A:329-385 DNA polymerase lambda d1rzta3 A:386-575 DNA polymerase lambda SCOP domains
CATH domains 1rztA01 A:249-331 [code=1.10.150.110, no name defined] 1rztA02 A:332-385 1rztA03 A:386-508 Beta Polymerase, domain 2 1rztA04 A:509-575 Beta Polymerase, domain 3 CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee.........hhhhhhhhhhhh..eeeeeeeeeee..eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee..ee.....eee........hhhhhhhhh.....hhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_X -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 1 (1) Exon 1.5e PDB: A:249-297 UniProt: 192-297 Exon 1.6b PDB: A:298-355 UniProt: 298-355 Exon 1.7b PDB: A:356-398 UniProt: 356-398 Exon 1.8c PDB: A:399-455 UniProt: 399-455 ------------------------------------------------------------------------------------------------------------------------ Transcript 1 (1)
Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9g PDB: A:455-575 UniProt: 455-575 Transcript 1 (2)
1rzt A 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
258 268 278 288 298 308 318 328 338 348 358 368 378 388 398 408 418 428 438 448 458 468 478 488 498 508 518 528 538 548 558 568
Chain B from PDB Type:DNA Length:11
1rzt B 1 CGGCAACGCAC 11
10
Chain C from PDB Type:DNA Length:5
1rzt C 1 GTGCG 5
Chain D from PDB Type:DNA Length:4
1rzt D 1 GCCG 4
Chain E from PDB Type:PROTEIN Length:326
aligned with DPOLL_HUMAN | Q9UGP5 from UniProtKB/Swiss-Prot Length:575
Alignment length:326
259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569
DPOLL_HUMAN 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
SCOP domains d1rzte1 E:250-328 DNA polymerase lambda d1rzte2 E:329-385 DNA polymerase lambda d1rzte3 E:386-575 DNA polymerase lambda SCOP domains
CATH domains 1rztE01 E:250-331 [code=1.10.150.110, no name defined] 1rztE02 E:332-385 1rztE03 E:386-508 Beta Polymerase, domain 2 1rztE04 E:509-575 Beta Polymerase, domain 3 CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh....hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee.........hhhhhhhhhhh...eeeeeeeeeee..eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee....................hhhhhhhhhh....hhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_X -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 1 (1) Exon 1.5e PDB: E:250-297 UniProt: 192-297 Exon 1.6b PDB: E:298-355 UniProt: 298-355 Exon 1.7b PDB: E:356-398 UniProt: 356-398 Exon 1.8c PDB: E:399-455 UniProt: 399-455 ------------------------------------------------------------------------------------------------------------------------ Transcript 1 (1)
Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9g PDB: E:455-575 UniProt: 455-575 Transcript 1 (2)
1rzt E 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569
Chain F from PDB Type:DNA Length:11
1rzt F 1 CGGCAACGCAC 11
10
Chain G from PDB Type:DNA Length:5
1rzt G 1 GTGCG 5
Chain H from PDB Type:DNA Length:4
1rzt H 1 GCCG 4
Chain I from PDB Type:PROTEIN Length:326
aligned with DPOLL_HUMAN | Q9UGP5 from UniProtKB/Swiss-Prot Length:575
Alignment length:326
259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569
DPOLL_HUMAN 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
SCOP domains d1rzti1 I:250-328 DNA polymerase lambda d1rzti2 I:329-385 DNA polymerase lambda d1rzti3 I:386-575 DNA polymerase lambda SCOP domains
CATH domains 1rztI01 I:250-331 [code=1.10.150.110, no name defined] 1rztI02 I:332-385 1rztI03 I:386-508 Beta Polymerase, domain 2 1rztI04 I:509-575 Beta Polymerase, domain 3 CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhh...hhhhh....hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhh....eeeeeeeeeee..eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee..ee.....eee...ee...hhhhhhhhh.....hhhhh.. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_X -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 1 (1) Exon 1.5e PDB: I:250-297 UniProt: 192-297 Exon 1.6b PDB: I:298-355 UniProt: 298-355 Exon 1.7b PDB: I:356-398 UniProt: 356-398 Exon 1.8c PDB: I:399-455 UniProt: 399-455 ------------------------------------------------------------------------------------------------------------------------ Transcript 1 (1)
Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9g PDB: I:455-575 UniProt: 455-575 Transcript 1 (2)
1rzt I 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
259 269 279 289 299 309 319 329 339 349 359 369 379 389 399 409 419 429 439 449 459 469 479 489 499 509 519 529 539 549 559 569
Chain J from PDB Type:DNA Length:11
1rzt J 1 CGGCAACGCAC 11
10
Chain K from PDB Type:DNA Length:5
1rzt K 1 GTGCG 5
Chain L from PDB Type:DNA Length:4
1rzt L 1 GCCG 4
Chain M from PDB Type:PROTEIN Length:327
aligned with DPOLL_HUMAN | Q9UGP5 from UniProtKB/Swiss-Prot Length:575
Alignment length:327
258 268 278 288 298 308 318 328 338 348 358 368 378 388 398 408 418 428 438 448 458 468 478 488 498 508 518 528 538 548 558 568
DPOLL_HUMAN 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
SCOP domains d1rztm1 M:249-328 DNA polymerase lambda d1rztm2 M:329-385 DNA polymerase lambda d1rztm3 M:386-575 DNA polymerase lambda SCOP domains
CATH domains 1rztM01 M:249-331 [code=1.10.150.110, no name defined] 1rztM02 M:332-385 1rztM03 M:386-508 Beta Polymerase, domain 2 1rztM04 M:509-575 Beta Polymerase, domain 3 CATH domains
Pfam domains (1) --------------------------------------------------------------------------------------DNA_pol_lambd_f-1rztM01 M:335-385 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
Pfam domains (2) --------------------------------------------------------------------------------------DNA_pol_lambd_f-1rztM02 M:335-385 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
Pfam domains (3) --------------------------------------------------------------------------------------DNA_pol_lambd_f-1rztM03 M:335-385 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
Pfam domains (4) --------------------------------------------------------------------------------------DNA_pol_lambd_f-1rztM04 M:335-385 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee.........hhhhhhhhhhhh..eeeeeeeeeee..eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee..ee.....eee...ee...hhhhhhhhh.....hhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------DNA_POLYMERASE_X -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript 1 (1) Exon 1.5e PDB: M:249-297 UniProt: 192-297 Exon 1.6b PDB: M:298-355 UniProt: 298-355 Exon 1.7b PDB: M:356-398 UniProt: 356-398 Exon 1.8c PDB: M:399-455 UniProt: 399-455 ------------------------------------------------------------------------------------------------------------------------ Transcript 1 (1)
Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.9g PDB: M:455-575 UniProt: 455-575 Transcript 1 (2)
1rzt M 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW 575
258 268 278 288 298 308 318 328 338 348 358 368 378 388 398 408 418 428 438 448 458 468 478 488 498 508 518 528 538 548 558 568
Chain N from PDB Type:DNA Length:11
1rzt N 1 CGGCAACGCAC 11
10
Chain O from PDB Type:DNA Length:5
1rzt O 1 GTGCG 5
Chain P from PDB Type:DNA Length:4
1rzt P 1 GCCG 4
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(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |