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(-) Description

Title :  TERNARY CRYSTAL STRUCTURES OF A HUMAN DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)FTC-TP.
 
Authors :  R. Vyas, Z. Suo
Date :  12 Apr 13  (Deposition) - 16 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Keywords :  Dna Polymerase, Dna Repair, Phosphoryl Transfer Reaction, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Vyas, W. J. Zahurancik, Z. Suo
Structural Basis For The Binding And Incorporation Of Nucleotide Analogs With L-Stereochemistry By Human Dna Polymerase Lambda.
Proc. Natl. Acad. Sci. Usa V. 111 E3033 2014
PubMed-ID: 25015085  |  Reference-DOI: 10.1073/PNAS.1401286111

(-) Compounds

Molecule 1 - DNA POLYMERASE LAMBDA
    Chains: A, E, I, M
    EC Number: 2.7.7.7, 4.2.99.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: POLL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: POL LAMBDA, DNA POLYMERASE BETA-2, POL BETA2, DNA POLYMERASE KAPPA
 
Molecule 2 - DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')
    Chains: B, F, J, N
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')
    Chains: C, G, K, O
    Engineered: YES
    Synthetic: YES
 
Molecule 4 - DNA (5'-D(P*GP*CP*CP*G)-3')
    Chains: D, H, L, P
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCD            
Biological Unit 2 (1x):     EFGH        
Biological Unit 3 (1x):         IJKL    
Biological Unit 4 (1x):             MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 35)

Asymmetric Unit (4, 35)
No.NameCountTypeFull Name
11RY4Ligand/Ion[[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ACT6Ligand/IonACETATE ION
3CA23Ligand/IonCALCIUM ION
4CAC2Ligand/IonCACODYLATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
11RY1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ACT2Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC-1Ligand/IonCACODYLATE ION
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
11RY1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ACT2Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC1Ligand/IonCACODYLATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
11RY1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC-1Ligand/IonCACODYLATE ION
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
11RY1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-5-FLUORANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC1Ligand/IonCACODYLATE ION

(-) Sites  (35, 35)

Asymmetric Unit (35, 35)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:386 , GLY A:416 , SER A:417 , ARG A:420 , CYS A:425 , GLY A:426 , ASP A:427 , ASP A:429 , TYR A:505 , PHE A:506 , ALA A:510 , ASN A:513 , CA A:605 , CA A:606 , HOH A:702 , HOH A:717 , HOH A:720 , HOH A:736 , HOH A:773 , HOH A:786 , DG B:5 , DC C:6BINDING SITE FOR RESIDUE 1RY A 601
02AC2SOFTWARESER A:339 , ILE A:341 , ALA A:344 , HOH A:828 , DA C:5 , HOH C:103BINDING SITE FOR RESIDUE CA A 602
03AC3SOFTWARECYS A:300 , ILE A:302 , ILE A:305 , HOH A:822 , DC D:3 , LYS M:307BINDING SITE FOR RESIDUE CA A 603
04AC4SOFTWARESER A:463 , HOH A:757 , HOH A:777 , HOH A:796 , HOH A:827 , DT B:10BINDING SITE FOR RESIDUE CA A 604
05AC5SOFTWAREASP A:427 , ASP A:429 , 1RY A:601 , HOH A:702BINDING SITE FOR RESIDUE CA A 605
06AC6SOFTWAREASP A:427 , ASP A:429 , ASP A:490 , 1RY A:601 , DC C:6BINDING SITE FOR RESIDUE CA A 606
07AC7SOFTWAREGLU A:396 , GLN A:400 , CYS A:412BINDING SITE FOR RESIDUE CA A 607
08AC8SOFTWARELEU A:503 , THR A:555 , GLU A:556 , HOH A:794 , HOH A:799BINDING SITE FOR RESIDUE ACT A 608
09AC9SOFTWAREHOH B:212 , HOH B:213 , HOH B:220BINDING SITE FOR RESIDUE CA B 101
10BC1SOFTWAREDG B:2 , DG B:3 , DC N:1BINDING SITE FOR RESIDUE ACT B 102
11BC2SOFTWAREARG E:386 , GLY E:416 , SER E:417 , ARG E:420 , CYS E:425 , GLY E:426 , ASP E:427 , ASP E:429 , TYR E:505 , PHE E:506 , ASN E:513 , CA E:602 , CA E:603 , HOH E:733 , HOH E:752 , HOH E:753 , HOH E:754 , HOH E:761 , HOH E:778 , DG F:5 , DC G:6BINDING SITE FOR RESIDUE 1RY E 601
12BC3SOFTWAREASP E:427 , ASP E:429 , 1RY E:601 , HOH E:752BINDING SITE FOR RESIDUE CA E 602
13BC4SOFTWAREASP E:427 , ASP E:429 , ASP E:490 , 1RY E:601BINDING SITE FOR RESIDUE CA E 603
14BC5SOFTWAREHOH E:754 , HOH E:778BINDING SITE FOR RESIDUE CA E 604
15BC6SOFTWARESER E:339 , ILE E:341 , ALA E:344 , HOH E:726 , DA G:5 , HOH G:101BINDING SITE FOR RESIDUE CA E 605
16BC7SOFTWAREGLU E:396 , GLN E:400 , CYS E:412 , HOH E:771BINDING SITE FOR RESIDUE CA E 606
17BC8SOFTWARESER E:463 , GLU E:465 , HOH E:763 , HOH F:209 , ARG I:441BINDING SITE FOR RESIDUE CAC E 607
18BC9SOFTWARETHR E:555 , GLU E:556 , HOH E:777BINDING SITE FOR RESIDUE ACT E 608
19CC1SOFTWAREHOH F:203 , HOH F:205 , HOH F:206 , HOH F:207BINDING SITE FOR RESIDUE CA F 101
20CC2SOFTWAREDG F:2 , DG F:3BINDING SITE FOR RESIDUE ACT F 102
21CC3SOFTWAREARG I:386 , GLY I:416 , SER I:417 , ARG I:420 , GLY I:426 , ASP I:427 , TYR I:505 , SER I:509 , ALA I:510 , ASN I:513 , ARG I:514 , ARG I:517 , CA I:604 , HOH I:752 , HOH I:763 , HOH I:767 , DG J:5 , DC K:6BINDING SITE FOR RESIDUE 1RY I 601
22CC4SOFTWARESER I:339 , ILE I:341 , ALA I:344 , HOH I:714 , DA K:5 , HOH K:201BINDING SITE FOR RESIDUE CA I 602
23CC5SOFTWAREASP I:427 , ASP I:429 , CA I:604 , HOH I:751 , HOH I:752 , HOH I:756BINDING SITE FOR RESIDUE CA I 603
24CC6SOFTWAREASP I:427 , 1RY I:601 , CA I:603 , HOH I:724 , HOH I:752BINDING SITE FOR RESIDUE CA I 604
25CC7SOFTWARETHR I:555 , GLU I:556BINDING SITE FOR RESIDUE ACT I 605
26CC8SOFTWAREDC J:4 , DG J:6BINDING SITE FOR RESIDUE CA J 101
27CC9SOFTWAREHOH J:202BINDING SITE FOR RESIDUE CA K 101
28DC1SOFTWAREARG M:386 , GLY M:416 , SER M:417 , ARG M:420 , GLY M:426 , TYR M:505 , SER M:509 , ALA M:510 , ASN M:513 , ARG M:517 , CA M:605 , HOH M:786 , HOH M:801 , HOH M:802 , DG N:5 , DC O:6BINDING SITE FOR RESIDUE 1RY M 601
29DC2SOFTWARECYS M:300 , ILE M:302 , PRO M:303 , ILE M:305 , DC P:3BINDING SITE FOR RESIDUE CA M 602
30DC3SOFTWARESER M:339 , ILE M:341 , ALA M:344 , DA O:5 , HOH O:101BINDING SITE FOR RESIDUE CA M 603
31DC4SOFTWAREASP M:427 , ASP M:429 , CA M:605 , HOH M:787BINDING SITE FOR RESIDUE CA M 604
32DC5SOFTWAREASP M:427 , ASP M:429 , 1RY M:601 , CA M:604 , HOH M:786BINDING SITE FOR RESIDUE CA M 605
33DC6SOFTWAREGLU M:318 , HOH M:800 , HOH M:812 , HOH M:814BINDING SITE FOR RESIDUE CAC M 606
34DC7SOFTWAREHIS M:290BINDING SITE FOR RESIDUE ACT M 607
35DC8SOFTWAREHOH M:824 , HOH N:208BINDING SITE FOR RESIDUE CA N 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K4I)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly A:508 -Ser A:509
2Gly E:508 -Ser E:509
3Gly I:508 -Ser I:509
4Gly M:508 -Ser M:509
5Ala M:535 -Val M:536
6Val M:536 -Val M:537

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K4I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K4I)

(-) Exons   (0, 0)

(no "Exon" information available for 4K4I)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhh...hhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeee.........eeeeeee.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....ee................ee...hhhhhhhhh.....hhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4i A 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLEHHHHH 582
                                   259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579   


Chain B from PDB  Type:DNA  Length:11
                                           
                 4k4i B   1 CGGCGGTACTG  11
                                    10 


Chain C from PDB  Type:DNA  Length:6
                                      
                 4k4i C   1 CAGTAC   6


Chain D from PDB  Type:DNA  Length:4
                                    
                 4k4i D   1 GCCG   4


Chain E from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee.........hhhhhhhhhhhh..eeeeeeee......eeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....ee.....................hhhhhhhhh.....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4i E 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLE 577
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568         


Chain F from PDB  Type:DNA  Length:11
                                           
                 4k4i F   1 CGGCGGTACTG  11
                                    10 


Chain G from PDB  Type:DNA  Length:6
                                      
                 4k4i G   1 CAGTAC   6


Chain H from PDB  Type:DNA  Length:4
                                    
                 4k4i H   1 GCCG   4


Chain I from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhh...eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeee.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eee.........ee...hhhhhhhh......hhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4i I 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTPGRVLPTPTEKDVFRLLGLPYREPAERDWLEHHH 580
                                   259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539||     555       565       575     
                                                                                                                                                                                                                                                                                                                            540|                                 
                                                                                                                                                                                                                                                                                                                             547                                 


Chain J from PDB  Type:DNA  Length:11
                                           
                 4k4i J   1 CGGCGGTACTG  11
                                    10 


Chain K from PDB  Type:DNA  Length:6
                                      
                 4k4i K   1 CAGTAC   6


Chain L from PDB  Type:DNA  Length:4
                                    
                 4k4i L   1 GCCG   4


Chain M from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh....hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeee.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee...............ee...hhhhhhhhhh....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4i M 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLE 577
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568         


Chain N from PDB  Type:DNA  Length:11
                                           
                 4k4i N   1 CGGCGGTACTG  11
                                    10 


Chain O from PDB  Type:DNA  Length:6
                                      
                 4k4i O   1 CAGTAC   6


Chain P from PDB  Type:DNA  Length:4
                                    
                 4k4i P   1 GCCG   4
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K4I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K4I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K4I)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala M:535 - Val M:536   [ RasMol ]  
    Gly A:508 - Ser A:509   [ RasMol ]  
    Gly E:508 - Ser E:509   [ RasMol ]  
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        DPOLL_HUMAN | Q9UGP5: 1nzp 1rzt 1xsl 1xsn 1xsp 2bcq 2bcr 2bcs 2bcu 2bcv 2gws 2jw5 2pfn 2pfo 2pfp 2pfq 3c5f 3c5g 3hw8 3hwt 3hx0 3mda 3mdc 3mgh 3mgi 3pml 3pmn 3pnc 3upq 3uq0 3uq2 4fo6 4k4g 4k4h 4x5v 4xa5 4xq8 4xrh 4xus 5ca7 5cb1 5chg 5cj7 5cp2 5cr0 5cwr 5ddm 5ddy 5dkw 5iii 5iij 5iik 5iil 5iim 5iin 5iio

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4k4g 4k4h