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(-) Description

Title :  TERNARY CRYSTAL STRUCTURES OF HUMAN DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND L-DCTP.
 
Authors :  R. Vyas, Z. Suo
Date :  12 Apr 13  (Deposition) - 16 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Keywords :  Dna Polymerase, Dna Repair, Phosphoryl Transfer Reaction, , Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Vyas, W. J. Zahurancik, Z. Suo
Structural Basis For The Binding And Incorporation Of Nucleotide Analogs With L-Stereochemistry By Human Dna Polymerase Lambda.
Proc. Natl. Acad. Sci. Usa V. 111 E3033 2014
PubMed-ID: 25015085  |  Reference-DOI: 10.1073/PNAS.1401286111

(-) Compounds

Molecule 1 - DNA POLYMERASE LAMBDA
    Chains: A, E, I, M
    EC Number: 2.7.7.7, 4.2.99.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: POLL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: POL LAMBDA, DNA POLYMERASE BETA-2, POL BETA2, DNA POLYMERASE KAPPA
 
Molecule 2 - DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')
    Chains: B, F, J, N
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')
    Chains: C, G, K, O
    Engineered: YES
    Synthetic: YES
 
Molecule 4 - DNA (5'-D(P*GP*CP*CP*G)-3')
    Chains: D, H, L, P
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCD            
Biological Unit 2 (1x):     EFGH        
Biological Unit 3 (1x):         IJKL    
Biological Unit 4 (1x):             MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 31)

Asymmetric Unit (4, 31)
No.NameCountTypeFull Name
11S04Ligand/Ion4-AMINO-1-{2-DEOXY-5-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-L-ERYTHRO-PENTOFURANOSYL}PYRIMIDIN-2(1H)-ONE
2ACT4Ligand/IonACETATE ION
3CA22Ligand/IonCALCIUM ION
4CAC1Ligand/IonCACODYLATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
11S01Ligand/Ion4-AMINO-1-{2-DEOXY-5-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-L-ERYTHRO-PENTOFURANOSYL}PYRIMIDIN-2(1H)-ONE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC-1Ligand/IonCACODYLATE ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
11S01Ligand/Ion4-AMINO-1-{2-DEOXY-5-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-L-ERYTHRO-PENTOFURANOSYL}PYRIMIDIN-2(1H)-ONE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC-1Ligand/IonCACODYLATE ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
11S01Ligand/Ion4-AMINO-1-{2-DEOXY-5-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-L-ERYTHRO-PENTOFURANOSYL}PYRIMIDIN-2(1H)-ONE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC-1Ligand/IonCACODYLATE ION
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
11S01Ligand/Ion4-AMINO-1-{2-DEOXY-5-O-[(R)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-L-ERYTHRO-PENTOFURANOSYL}PYRIMIDIN-2(1H)-ONE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
4CAC1Ligand/IonCACODYLATE ION

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:386 , GLY A:416 , SER A:417 , ARG A:420 , CYS A:425 , GLY A:426 , ASP A:427 , ASP A:429 , TYR A:505 , PHE A:506 , GLY A:508 , ALA A:510 , ASN A:513 , CA A:602 , CA A:603 , HOH A:703 , HOH A:707 , HOH A:720 , HOH A:723 , HOH A:738 , HOH A:773 , HOH A:786 , DG B:5 , DC C:6 , HOH C:102BINDING SITE FOR RESIDUE 1S0 A 601
02AC2SOFTWAREASP A:427 , ASP A:429 , 1S0 A:601 , HOH A:703BINDING SITE FOR RESIDUE CA A 602
03AC3SOFTWAREASP A:427 , ASP A:429 , ASP A:490 , 1S0 A:601 , HOH A:707 , DC C:6BINDING SITE FOR RESIDUE CA A 603
04AC4SOFTWARESER A:339 , ILE A:341 , ALA A:344 , HOH A:812 , DA C:5 , HOH C:101BINDING SITE FOR RESIDUE CA A 604
05AC5SOFTWARECYS A:300 , ILE A:302 , ILE A:305 , DC D:3BINDING SITE FOR RESIDUE CA A 605
06AC6SOFTWARESER A:463 , HOH A:797 , HOH B:203 , HOH B:210 , HOH B:214 , HOH M:771BINDING SITE FOR RESIDUE CA A 606
07AC7SOFTWAREHOH B:218 , HOH B:219BINDING SITE FOR RESIDUE CA B 101
08AC8SOFTWAREDG B:2 , DG B:3 , DC N:1BINDING SITE FOR RESIDUE ACT B 102
09AC9SOFTWAREARG E:386 , GLY E:416 , SER E:417 , ARG E:420 , GLY E:426 , ASP E:427 , ASP E:429 , TYR E:505 , PHE E:506 , GLY E:508 , ALA E:510 , ASN E:513 , CA E:602 , CA E:603 , CA E:605 , HOH E:701 , HOH E:736 , HOH E:742 , HOH E:745 , DG F:5 , DC G:6BINDING SITE FOR RESIDUE 1S0 E 601
10BC1SOFTWAREASP E:427 , ASP E:429 , 1S0 E:601 , HOH E:701BINDING SITE FOR RESIDUE CA E 602
11BC2SOFTWAREASP E:427 , ASP E:429 , ASP E:490 , 1S0 E:601 , HOH E:745 , DC G:6BINDING SITE FOR RESIDUE CA E 603
12BC3SOFTWARESER E:463 , GLN E:470 , LYS E:472 , DC F:9BINDING SITE FOR RESIDUE CA E 604
13BC4SOFTWAREALA E:510 , 1S0 E:601 , HOH E:742BINDING SITE FOR RESIDUE CA E 605
14BC5SOFTWARESER E:339 , ILE E:341 , ALA E:344 , HOH E:729 , DA G:5 , HOH G:102BINDING SITE FOR RESIDUE CA E 606
15BC6SOFTWAREHOH F:203 , HOH F:205BINDING SITE FOR RESIDUE CA F 101
16BC7SOFTWAREDG F:2 , DG H:4BINDING SITE FOR RESIDUE ACT F 102
17BC8SOFTWAREARG I:386 , SER I:417 , ARG I:420 , GLY I:426 , ASP I:427 , ASP I:429 , TYR I:505 , PHE I:506 , SER I:509 , ALA I:510 , ASN I:513 , ARG I:514 , ARG I:517 , CA I:603 , HOH I:720 , HOH I:741 , HOH I:750 , DG J:5 , DC K:6BINDING SITE FOR RESIDUE 1S0 I 601
18BC9SOFTWAREASP I:427 , ASP I:429 , ASP I:490 , CA I:603 , HOH I:719 , HOH I:736BINDING SITE FOR RESIDUE CA I 602
19CC1SOFTWAREASP I:427 , ASP I:429 , 1S0 I:601 , CA I:602 , HOH I:736 , HOH I:741 , HOH I:750BINDING SITE FOR RESIDUE CA I 603
20CC2SOFTWARESER I:339 , ILE I:341 , ALA I:344 , DA K:5 , HOH K:102 , HOH K:103BINDING SITE FOR RESIDUE CA I 604
21CC3SOFTWAREPRO I:554 , THR I:555 , GLU I:556BINDING SITE FOR RESIDUE ACT I 605
22CC4SOFTWAREDC J:4 , DG J:6BINDING SITE FOR RESIDUE CA J 101
23CC5SOFTWAREHOH A:701 , HOH J:202 , HOH K:101BINDING SITE FOR RESIDUE CA J 102
24CC6SOFTWAREARG I:308 , HOH I:766 , DG L:1BINDING SITE FOR RESIDUE CA L 101
25CC7SOFTWAREGLU M:466 , DC N:9BINDING SITE FOR RESIDUE ACT M 601
26CC8SOFTWAREARG M:386 , SER M:417 , ARG M:420 , GLY M:426 , ASP M:427 , TYR M:505 , PHE M:506 , SER M:509 , ALA M:510 , ASN M:513 , ARG M:517 , CA M:603 , HOH M:731 , HOH M:791 , DG N:5 , DC O:6BINDING SITE FOR RESIDUE 1S0 M 602
27CC9SOFTWAREASP M:427 , ASP M:429 , 1S0 M:602 , HOH M:791 , HOH M:798BINDING SITE FOR RESIDUE CA M 603
28DC1SOFTWARECYS M:300 , ILE M:302 , ILE M:305 , DC P:3BINDING SITE FOR RESIDUE CA M 604
29DC2SOFTWARESER M:339 , ILE M:341 , ALA M:344 , DA O:5 , HOH O:101BINDING SITE FOR RESIDUE CA M 605
30DC3SOFTWAREASP M:427 , ASP M:429 , ASP M:490 , HOH M:760 , HOH M:798BINDING SITE FOR RESIDUE CA M 606
31DC4SOFTWAREGLU M:318BINDING SITE FOR RESIDUE CAC M 607

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K4G)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:508 -Ser A:509
2Gly E:508 -Ser E:509
3Gly I:508 -Ser I:509
4Gly M:508 -Ser M:509

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K4G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K4G)

(-) Exons   (0, 0)

(no "Exon" information available for 4K4G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhhh...hhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeee.........eeeeeee.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....ee............hhhhhhhhh.....hhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4g A 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVPGRVLPTPTEKDVFRLLGLPYREPAERDWLEHHH 580
                                   259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       548       558       568       578  
                                                                                                                                                                                                                                                                                                                         537|                                 
                                                                                                                                                                                                                                                                                                                          547                                 


Chain B from PDB  Type:DNA  Length:11
                                           
                 4k4g B   1 CGGCGGTACTG  11
                                    10 


Chain C from PDB  Type:DNA  Length:6
                                      
                 4k4g C   1 CAGTAC   6


Chain D from PDB  Type:DNA  Length:4
                                    
                 4k4g D   1 GCCG   4


Chain E from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee.........hhhhhhhhhhhh..eeeeee....eeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....ee................ee...hhhhhhhhh.....hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4g E 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWL 576
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458     ||473       483       493       503       513       523       533       543       553       563       573   
                                                                                                                                                                                                                                                 464|                                                                                                          
                                                                                                                                                                                                                                                  470                                                                                                          


Chain F from PDB  Type:DNA  Length:11
                                           
                 4k4g F   1 CGGCGGTACTG  11
                                    10 


Chain G from PDB  Type:DNA  Length:6
                                      
                 4k4g G   1 CAGTAC   6


Chain H from PDB  Type:DNA  Length:4
                                    
                 4k4g H   1 GCCG   4


Chain I from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhh....hhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eee..........ee...hhhhhhhhh.....hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4g I 250 TNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLEHHHH 581
                                   259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       544       554       564       574       
                                                                                                                                                                                                                                                                                                                         537|                                      
                                                                                                                                                                                                                                                                                                                          543                                      


Chain J from PDB  Type:DNA  Length:11
                                           
                 4k4g J   1 CGGCGGTACTG  11
                                    10 


Chain K from PDB  Type:DNA  Length:6
                                      
                 4k4g K   1 CAGTAC   6


Chain L from PDB  Type:DNA  Length:4
                                    
                 4k4g L   1 GCCG   4


Chain M from PDB  Type:PROTEIN  Length:328
                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee.............ee...hhhhhhhhh.....hhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4g M 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLEH 578
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538|      550       560       570        
                                                                                                                                                                                                                                                                                                                           538|                                     
                                                                                                                                                                                                                                                                                                                            541                                     


Chain N from PDB  Type:DNA  Length:11
                                           
                 4k4g N   1 CGGCGGTACTG  11
                                    10 


Chain O from PDB  Type:DNA  Length:6
                                      
                 4k4g O   1 CAGTAC   6


Chain P from PDB  Type:DNA  Length:4
                                    
                 4k4g P   1 GCCG   4
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K4G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K4G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K4G)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:508 - Ser A:509   [ RasMol ]  
    Gly E:508 - Ser E:509   [ RasMol ]  
    Gly I:508 - Ser I:509   [ RasMol ]  
    Gly M:508 - Ser M:509   [ RasMol ]  
 
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  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
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  4k4g
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  DPOLL_HUMAN | Q9UGP5
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  2.7.7.7
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  4.2.99.-
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  DPOLL_HUMAN | Q9UGP5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DPOLL_HUMAN | Q9UGP5: 1nzp 1rzt 1xsl 1xsn 1xsp 2bcq 2bcr 2bcs 2bcu 2bcv 2gws 2jw5 2pfn 2pfo 2pfp 2pfq 3c5f 3c5g 3hw8 3hwt 3hx0 3mda 3mdc 3mgh 3mgi 3pml 3pmn 3pnc 3upq 3uq0 3uq2 4fo6 4k4h 4k4i 4x5v 4xa5 4xq8 4xrh 4xus 5ca7 5cb1 5chg 5cj7 5cp2 5cr0 5cwr 5ddm 5ddy 5dkw 5iii 5iij 5iik 5iil 5iim 5iin 5iio

(-) Related Entries Specified in the PDB File

4k4h 4k4i