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(-) Description

Title :  TERNARY CRYSTAL STRUCTURES OF A HUMAN DNA POLYMERASE LAMBDA IN COMPLEX WITH DNA AND (-)3TC-TP.
 
Authors :  R. Vyas, Z. Suo
Date :  12 Apr 13  (Deposition) - 16 Jul 14  (Release) - 13 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Keywords :  Dna Polymerase, Dna Repair, Phosphoryl Transfer Reaction, Transferase-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Vyas, W. J. Zahurancik, Z. Suo
Structural Basis For The Binding And Incorporation Of Nucleotide Analogs With L-Stereochemistry By Human Dna Polymerase Lambda.
Proc. Natl. Acad. Sci. Usa V. 111 E3033 2014
PubMed-ID: 25015085  |  Reference-DOI: 10.1073/PNAS.1401286111

(-) Compounds

Molecule 1 - DNA POLYMERASE LAMBDA
    Chains: A, E, I, M
    EC Number: 2.7.7.7, 4.2.99.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: POLL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: POL LAMBDA, DNA POLYMERASE BETA-2, POL BETA2, DNA POLYMERASE KAPPA
 
Molecule 2 - DNA (5'-D(*CP*GP*GP*CP*GP*GP*TP*AP*CP*TP*G)-3')
    Chains: B, F, J, N
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - DNA (5'-D(*CP*AP*GP*TP*AP*C)-3')
    Chains: C, G, K, O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 4 - DNA (5'-D(P*GP*CP*CP*G)-3')
    Chains: D, H, L, P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit : ABCDEFGHIJKLMNOP
Biological Unit 1 (1x): ABCD            
Biological Unit 2 (1x):     EFGH        
Biological Unit 3 (1x):         IJKL    
Biological Unit 4 (1x):             MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 32)

Asymmetric Unit (3, 32)
No.NameCountTypeFull Name
11RZ4Ligand/Ion[[(2R,5S)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE
2ACT5Ligand/IonACETATE ION
3CA23Ligand/IonCALCIUM ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
11RZ1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
11RZ1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
11RZ1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE
2ACT1Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION
Biological Unit 4 (2, 3)
No.NameCountTypeFull Name
11RZ1Ligand/Ion[[(2R,5S)-5-(4-AZANYL-2-OXIDANYLIDENE-PYRIMIDIN-1-YL)-1,3-OXATHIOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]PHOSPHONO HYDROGEN PHOSPHATE
2ACT2Ligand/IonACETATE ION
3CA-1Ligand/IonCALCIUM ION

(-) Sites  (32, 32)

Asymmetric Unit (32, 32)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:386 , GLY A:416 , SER A:417 , ARG A:420 , CYS A:425 , GLY A:426 , ASP A:427 , ASP A:429 , TYR A:505 , PHE A:506 , ALA A:510 , ASN A:513 , CA A:602 , CA A:604 , HOH A:704 , HOH A:707 , HOH A:752 , HOH A:755 , HOH A:794 , DG B:5 , DC C:6BINDING SITE FOR RESIDUE 1RZ A 601
02AC2SOFTWAREASP A:427 , ASP A:429 , 1RZ A:601 , HOH A:707BINDING SITE FOR RESIDUE CA A 602
03AC3SOFTWARESER A:463 , HOH A:774 , HOH A:812 , HOH A:813 , DT B:10 , HOH B:206BINDING SITE FOR RESIDUE CA A 603
04AC4SOFTWAREASP A:427 , ASP A:429 , ASP A:490 , 1RZ A:601 , HOH A:752 , DC C:6BINDING SITE FOR RESIDUE CA A 604
05AC5SOFTWARESER A:339 , ILE A:341 , ALA A:344 , DA C:5 , HOH C:101 , HOH C:111BINDING SITE FOR RESIDUE CA A 605
06AC6SOFTWAREGLU A:396 , GLN A:400 , CYS A:412BINDING SITE FOR RESIDUE CA A 606
07AC7SOFTWARECYS A:300 , ILE A:302 , ILE A:305 , HOH A:701 , HOH A:732 , DC D:3 , LYS M:307BINDING SITE FOR RESIDUE CA A 607
08AC8SOFTWARETHR A:555 , GLU A:556BINDING SITE FOR RESIDUE ACT A 608
09AC9SOFTWAREHOH B:202 , HOH B:203BINDING SITE FOR RESIDUE CA B 101
10BC1SOFTWAREARG E:386 , GLY E:416 , SER E:417 , ARG E:420 , GLY E:426 , ASP E:427 , ASP E:429 , TYR E:505 , PHE E:506 , ASN E:513 , CA E:602 , CA E:604 , HOH E:701 , HOH E:709 , HOH E:713 , HOH E:727 , DG F:5 , DC G:6BINDING SITE FOR RESIDUE 1RZ E 601
11BC2SOFTWAREASP E:427 , ASP E:429 , 1RZ E:601 , CA E:604 , HOH E:709BINDING SITE FOR RESIDUE CA E 602
12BC3SOFTWARESER E:339 , ILE E:341 , ALA E:344 , HOH E:732 , DA G:5 , HOH G:101BINDING SITE FOR RESIDUE CA E 603
13BC4SOFTWAREASP E:427 , ASP E:429 , ASP E:490 , 1RZ E:601 , CA E:602BINDING SITE FOR RESIDUE CA E 604
14BC5SOFTWAREGLU E:396 , GLN E:400 , CYS E:412BINDING SITE FOR RESIDUE CA E 605
15BC6SOFTWAREHOH F:202 , HOH F:204 , HOH F:206BINDING SITE FOR RESIDUE CA F 101
16BC7SOFTWAREDG F:2 , DG F:3 , DG H:4 , DC J:1BINDING SITE FOR RESIDUE ACT F 102
17BC8SOFTWAREARG I:386 , GLY I:416 , SER I:417 , ARG I:420 , GLY I:426 , ASP I:427 , ASP I:429 , TYR I:505 , ASN I:513 , ARG I:514 , ARG I:517 , CA I:602 , CA I:603 , CA I:604 , HOH I:769 , HOH I:770 , HOH I:780 , DG J:5 , DC K:6BINDING SITE FOR RESIDUE 1RZ I 601
18BC9SOFTWAREASP I:427 , ASP I:429 , 1RZ I:601 , CA I:603 , HOH I:735BINDING SITE FOR RESIDUE CA I 602
19CC1SOFTWAREASP I:427 , ASP I:429 , 1RZ I:601 , CA I:602 , HOH I:743BINDING SITE FOR RESIDUE CA I 603
20CC2SOFTWAREALA I:510 , 1RZ I:601 , HOH I:780BINDING SITE FOR RESIDUE CA I 604
21CC3SOFTWARESER I:339 , ILE I:341 , ALA I:344 , HOH I:710 , DA K:5 , HOH K:102BINDING SITE FOR RESIDUE CA I 605
22CC4SOFTWARETHR I:555 , GLU I:556BINDING SITE FOR RESIDUE ACT I 606
23CC5SOFTWAREDC J:4 , DG J:6BINDING SITE FOR RESIDUE CA J 101
24CC6SOFTWAREARG M:386 , SER M:417 , ARG M:420 , GLY M:426 , TYR M:505 , SER M:509 , ALA M:510 , ASN M:513 , ARG M:517 , CA M:603 , HOH M:746 , HOH M:747 , HOH M:836 , DG N:5 , DC O:6BINDING SITE FOR RESIDUE 1RZ M 601
25CC7SOFTWAREASP M:427 , ASP M:429 , CA M:603 , HOH M:732 , HOH M:786 , HOH M:841BINDING SITE FOR RESIDUE CA M 602
26CC8SOFTWAREASP M:427 , ASP M:429 , 1RZ M:601 , CA M:602 , HOH M:747BINDING SITE FOR RESIDUE CA M 603
27CC9SOFTWARESER M:339 , ILE M:341 , ALA M:344 , DA O:5 , HOH O:103BINDING SITE FOR RESIDUE CA M 604
28DC1SOFTWARECYS M:300 , ILE M:302 , ILE M:305 , DC P:3BINDING SITE FOR RESIDUE CA M 605
29DC2SOFTWAREGLU M:318 , HOH M:759 , HOH M:769 , HOH M:838 , HOH M:839 , HOH M:840BINDING SITE FOR RESIDUE CA M 606
30DC3SOFTWAREASP M:326BINDING SITE FOR RESIDUE ACT M 607
31DC4SOFTWAREPRO A:482 , PHE M:499 , PRO M:554 , THR M:555 , GLU M:556 , HOH M:829BINDING SITE FOR RESIDUE ACT M 608
32DC5SOFTWAREDC N:4 , DG N:6 , HOH N:205BINDING SITE FOR RESIDUE CA N 101

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1E:543 -I:543

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gly A:508 -Ser A:509
2Gly E:508 -Ser E:509
3Gly I:508 -Ser I:509
4Val I:537 -Arg I:538
5Gly M:508 -Ser M:509

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K4H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K4H)

(-) Exons   (0, 0)

(no "Exon" information available for 4K4H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhh...hhhhhhhhhhhhh...hhhhhh...hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeeee........eeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee........eee...hhhhhhhhh.....hhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4h A 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLEHHHH 581
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       544       554       564       574       
                                                                                                                                                                                                                                                                                                                          537|                                     
                                                                                                                                                                                                                                                                                                                           544                                     


Chain B from PDB  Type:DNA  Length:11
                                           
                 4k4h B   1 CGGCGGTACTG  11
                                    10 


Chain C from PDB  Type:DNA  Length:6
                                      
                 4k4h C   1 CAGTAC   6


Chain D from PDB  Type:DNA  Length:4
                                    
                 4k4h D   1 GCCG   4


Chain E from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee.........hhhhhhhhhhhh..eeeeeeee....eeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee....ee................ee...hhhhhhhhh.....hhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4h E 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWL 576
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458      |470       480       490       500       510       520       530       540       550       560       570      
                                                                                                                                                                                                                                                  465|                                                                                                            
                                                                                                                                                                                                                                                   468                                                                                                            


Chain F from PDB  Type:DNA  Length:11
                                           
                 4k4h F   1 CGGCGGTACTG  11
                                    10 


Chain G from PDB  Type:DNA  Length:6
                                      
                 4k4h G   1 CAGTAC   6


Chain H from PDB  Type:DNA  Length:4
                                    
                 4k4h H   1 GCCG   4


Chain I from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh......hhhhhhh....hhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhh...eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeee.........eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee...............ee...hhhhhhhhh.....hhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4h I 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLEHHH 580
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538       548       558       568       578  


Chain J from PDB  Type:DNA  Length:11
                                           
                 4k4h J   1 CGGCGGTACTG  11
                                    10 


Chain K from PDB  Type:DNA  Length:6
                                      
                 4k4h K   1 CAGTAC   6


Chain L from PDB  Type:DNA  Length:4
                                    
                 4k4h L   1 GCCG   4


Chain M from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhh....hhhhhhhhhhhhhhh.hhhhhh...hhhhhhhhhh....hhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhh.....eeeehhhhhh...ee..eeeeee........hhhhhhhhhhhhh..eeeeeeeeeee..eeeeeeeee.......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee....eee...........ee...hhhhhhhhhh....hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k4h M 249 ATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDWLE 577
                                   258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538|      552       562       572     
                                                                                                                                                                                                                                                                                                                           538|                                  
                                                                                                                                                                                                                                                                                                                            543                                  


Chain N from PDB  Type:DNA  Length:11
                                           
                 4k4h N   1 CGGCGGTACTG  11
                                    10 


Chain O from PDB  Type:DNA  Length:6
                                      
                 4k4h O   1 CAGTAC   6


Chain P from PDB  Type:DNA  Length:4
                                    
                 4k4h P   1 GCCG   4
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K4H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K4H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K4H)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:508 - Ser A:509   [ RasMol ]  
    Gly E:508 - Ser E:509   [ RasMol ]  
    Gly I:508 - Ser I:509   [ RasMol ]  
    Gly M:508 - Ser M:509   [ RasMol ]  
    Val I:537 - Arg I:538   [ RasMol ]  
 
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        DPOLL_HUMAN | Q9UGP5: 1nzp 1rzt 1xsl 1xsn 1xsp 2bcq 2bcr 2bcs 2bcu 2bcv 2gws 2jw5 2pfn 2pfo 2pfp 2pfq 3c5f 3c5g 3hw8 3hwt 3hx0 3mda 3mdc 3mgh 3mgi 3pml 3pmn 3pnc 3upq 3uq0 3uq2 4fo6 4k4g 4k4i 4x5v 4xa5 4xq8 4xrh 4xus 5ca7 5cb1 5chg 5cj7 5cp2 5cr0 5cwr 5ddm 5ddy 5dkw 5iii 5iij 5iik 5iil 5iim 5iin 5iio

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4k4g 4k4i