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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ IN COMPLEX WITH HUMAN LC3B
 
Authors :  S. Pantoom, I. R. Vetter, Y. W. Wu
Date :  30 Dec 16  (Deposition) - 19 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.47
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Autophagy, Host-Pathogen Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yang, S. Pantoom, Y. W. Wu
Elucidation Of The Anti-Autophagy Mechanism Of The Legionella Effector Ravz Using Semisynthetic Lc3 Proteins.
Elife V. 6 2017
PubMed-ID: 28395732  |  Reference-DOI: 10.7554/ELIFE.23905

(-) Compounds

Molecule 1 - LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Expression System Vector: POPIN
    Expression System Vector Type: PLASMID
    Gene: LPG1683
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
    Organism Taxid: 272624
 
Molecule 2 - MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Expression System Vector: PMAL
    Expression System Vector Type: PLASMID
    Gene: MAP1LC3B, MAP1ALC3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 BETA

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MS2)

(-) Sites  (0, 0)

(no "Site" information available for 5MS2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MS2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MS2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MS2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MS2)

(-) Exons   (0, 0)

(no "Exon" information available for 5MS2)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhh.....ee......hhhhh.hhhhhhhhhhhh............eee........eeeeee.....eeeee......eeee.........eehhhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeeeeeeee....eeeeeeeee......hhhhhhhh.......hhhhhhhhhhhhhh....ee...eeeee......hhhhhhhhhhhhhhhhhhhhhhh....ee..ee.hhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ms2 A  25 DIDEFDLLEGDEKLPGDSELDKTTSIYPPETSWEVNKGMNSSRLHKLYSLFFDKSSAFYLGDDVSVLEDKPLTGAYGFQSKKNDQQIFLFRPDSDYVAGYHVDAKSDAGWVNDKLDRRLSEISEFCSKATQPATFILPFVEMPTDITKGVQHQVLLTISYDPKSKQLTPTVYDSIGRDTYSESLSSYFKGKYRTTCDEILTQSIEKAIKSTDFTLGKFTRAAYNHQNRLTEGNCGSYTFRTIKEVISSSAQGTEVKIPGSGYITSNSYLTSQHVQDIESCIKYRNLGVVDIESALTEGKTLPVQLSEFIVALEDYGKLRSQQSEKSMLNFIGYSKTAKLTAVELLIGILNDIKGKNEISESQYDKLVKEVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFD 429
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424     


Chain B from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh........eeeeeee.............eeee....hhhhhhhhhhhhh........eeee..........hhhhhhhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5ms2 B   5 KTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119
                                    14        24        34        44        54        64        74        84        94       104       114
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MS2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MS2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MS2)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  Q5ZUV9_LEGPH | Q5ZUV9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MLP3B_HUMAN | Q9GZQ8: 1v49 2lue 2n9x 2zjd 3vtu 3vtv 3vtw 3wao 3x0w 4waa 5d94 5dcn 5gmv 5ms5 5ms6 5v4k 5xac 5xad 5xae
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        Q5ZUV9_LEGPH | Q5ZUV9: 5cqc 5hzy 5io3 5izv 5ms5 5ms7 5ms8

(-) Related Entries Specified in the PDB File

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