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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ_1-487
 
Authors :  S. Pantoom, I. R. Vetter, Y. W. Wu
Date :  31 Dec 16  (Deposition) - 19 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase / Autophagy / Legionella Pneumophila Effector Protein / Atg8 Deconjugating Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yang, S. Pantoom, Y. W. Wu
Elucidation Of The Anti-Autophagy Mechanism Of The Legionella Effector Ravz Using Semisynthetic Lc3 Proteins.
Elife V. 6 2017
PubMed-ID: 28395732  |  Reference-DOI: 10.7554/ELIFE.23905

(-) Compounds

Molecule 1 - LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: POPIN
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: LPG1683
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA ATCC 33215
    Organism Taxid: 933085

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1BA2Ligand/IonBARIUM ION
2PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:135 , ASP A:137 , ASP A:140binding site for residue BA A 501
2AC2SOFTWARECYS A:425 , VAL A:426binding site for residue PEG A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MS8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MS8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MS8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MS8)

(-) Exons   (0, 0)

(no "Exon" information available for 5MS8)

(-) Sequences/Alignments

Asymmetric Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:377
                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......hhhhh.hhhhhhhhhhhhhh.........eee.........eeeeee.....eeeee......eeee........eeehhhhhhhhhhhhhhhhh....eeeeeeeeeee........eeeeeeeeee....eeeeeeee.....hhhhh.hhhhhh.....hhhhhhhhhhhhh.....ee...eeee......hhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhh......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..ee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ms8 A  47 TTSIYPPETSWEVNKGMNSSRLHKLYSLFFDKSSAFYLGDDVSVLEDKPLTGAYGFQSKKNDQQIFLFRPDSDYVAGYHVDAKSDAGWVNDKLDRRLSEISEFCSKATQPATFILPFVEMPTDITKGVQHQVLLTISYDPKSKQLTPTVYDSIGRDTYSESLSSYFKGKYRTTCDEILTQSIEKAIKSTDFTLGKFTRAAYNHQNGNCGSYTFRTIKEVISSSAQGTEVKIPGSGYITSNSYLTSQHVQDIESCIKYRNLGVVDIESALTEGKTLPVQLSEFIVALEDYGKLRSQQSEIGYSKTAKLTAVELLIGILNDIKGKNEISESQYDKLVKEVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFDDTID 433
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246    || 260       270       280       290       300       310       320       330       340       356       366       376       386       396       406       416       426       
                                                                                                                                                                                                                                      251|                                                                                         348|                                                                              
                                                                                                                                                                                                                                       256                                                                                          355
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MS8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MS8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MS8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5ZUV9_LEGPH | Q5ZUV9: 5cqc 5hzy 5io3 5izv 5ms2 5ms5 5ms7

(-) Related Entries Specified in the PDB File

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