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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ - I422
 
Authors :  D. H. Kwon, L. Kim, B. -W. Kim, S. B. Hong, H. K. Song
Date :  08 Mar 16  (Deposition) - 09 Nov 16  (Release) - 17 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.74
Chains :  Asym./Biol. Unit :  A
Keywords :  Autophagy, Atg8, Deconjugating Enzyme, Protease, Atg4B, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Kwon, S. Kim, Y. O. Jung, K. H. Roh, L. Kim, B. -W. Kim, S. B. Hong, I. Y. Lee, J. H. Song, W. C. Lee, E. J. Choi, K. Y. Hwang, H. K. Song
The 1:2 Complex Between Ravz And Lc3 Reveals A Mechanism Fo Deconjugation Of Lc3 On The Phagophore Membrane
Autophagy V. 13 70 2017
PubMed-ID: 27791457  |  Reference-DOI: 10.1080/15548627.2016.1243199

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN RAVZ
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: LPG1683
    Mutation: YES
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5IO3)

(-) Sites  (0, 0)

(no "Site" information available for 5IO3)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IO3)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:429 -Asp A:430
2Thr A:431 -Ile A:432
3Ile A:432 -Asp A:433

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IO3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IO3)

(-) Exons   (0, 0)

(no "Exon" information available for 5IO3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:385
                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......hhhhh.hhhhhhhhhhhhh...........eee........eeeeee.....eeeee......eeee........eeehhhhhhhhhhhhhhhhhh...eeeeeeeeeee........eeeeeeeeee....eeeeeeee......................hhhhhhhhhhhhh.....ee...eeee.........hhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhh......hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh..ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5io3 A  49 SIYPPETSWEVNKGMNSSRLHKLYSLFFDKSSAFYLGDDVSVLEDKPLTGAYGFQSKKNDQQIFLFRPDSDYVAGYHVDAKSDAGWVNDKLDRRLSEISEFCSKATQPATFILPFVEMPTDITKGVQHQVLLTISYDPKSKQLTPTVYDSIGRDTYSESLSSYFKGKYRTTCDEILTQSIEKAIKSTDFTLGKFTRAAYNHQNRLTEGNSGSYTFRTIKEVISSSAQGTEVKIPGSGYITSNSYLTSQHVQDIESCIKYRNLGVVDIESALTEGKTLPVQLSEFIVALEDYGKLRSQQSEKSMLNFIGYSKTAKLTAVELLIGILNDIKGKNEISESQYDKLVKEVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFDDTID 433
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IO3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IO3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IO3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  Cis Peptide Bonds
    Asp A:429 - Asp A:430   [ RasMol ]  
    Ile A:432 - Asp A:433   [ RasMol ]  
    Thr A:431 - Ile A:432   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5ZUV9_LEGPH | Q5ZUV9: 5cqc 5hzy 5izv 5ms2 5ms5 5ms7 5ms8

(-) Related Entries Specified in the PDB File

5hzy