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(-) Description

Title :  CRYSTAL STRUCTURE OF LC3 IN COMPLEX WITH TECPR2 LIR
 
Authors :  D. Stadel, J. Huber, V. Dotsch, V. V. Rogov, C. Behrends, M. Akutsu
Date :  24 Aug 15  (Deposition) - 09 Mar 16  (Release) - 26 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Lc3, Autophagy, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Stadel, V. Millarte, K. D. Tillmann, J. Huber, B. C. Tamin-Yecheskel, M. Akutsu, A. Demishtein, B. Ben-Zeev, Y. Anikster, F. Perez, V. Dotsch, Z. Elazar, V. V. Rogov, H. Farhan, C. Behrends
Tecpr2 Cooperates With Lc3C To Regulate Copii-Dependent Er Export.
Mol. Cell V. 60 89 2015
PubMed-ID: 26431026  |  Reference-DOI: 10.1016/J.MOLCEL.2015.09.010

(-) Compounds

Molecule 1 - MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 2-119
    Gene: MAP1LC3B, MAP1ALC3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AUTOPHAGY-RELATED PROTEIN LC3 B,AUTOPHAGY-RELATED UBIQUITIN- LIKE MODIFIER LC3 B,MAP1 LIGHT CHAIN 3-LIKE PROTEIN 2,MAP1A/MAP1B LIGHT CHAIN 3 B,MAP1A/MAP1B LC3 B,MICROTUBULE-ASSOCIATED PROTEIN 1 LIGHT CHAIN 3 BETA

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:-1 , GLY A:0 , GLY A:1 , ARG A:70 , HOH A:306binding site for residue SO4 A 201
2AC2SOFTWAREGLN A:9 , ARG A:68 , ARG A:69 , ALA A:75binding site for residue SO4 A 202
3AC3SOFTWAREHIS A:27 , THR A:29 , LYS A:30 , LYS A:42 , HOH A:304binding site for residue SO4 A 203
4AC4SOFTWARETHR A:6 , ARG A:37 , LYS A:39binding site for residue SO4 A 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DCN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DCN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DCN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DCN)

(-) Exons   (0, 0)

(no "Exon" information available for 5DCN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee.............eeeee...hhhhhhhhhhhhh........eeee..ee......hhhhhhhhhh.....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5dcn A  -6 DEWEVIGGPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETF 119
                                     3        13        23        33        43        53        63        73        83        93       103       113
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DCN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DCN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DCN)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  5dcn
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  MLP3B_HUMAN | Q9GZQ8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MLP3B_HUMAN | Q9GZQ8: 1v49 2lue 2n9x 2zjd 3vtu 3vtv 3vtw 3wao 3x0w 4waa 5d94 5gmv 5ms2 5ms5 5ms6 5v4k 5xac 5xad 5xae

(-) Related Entries Specified in the PDB File

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