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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ_20-502
 
Authors :  S. Pantoom, I. R. Vetter, Y. W. Wu
Date :  31 Dec 16  (Deposition) - 19 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase / Autophagy / Legionella Pneumophila Effector Protein / Atg8 Deconjugating Enzyme, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yang, S. Pantoom, Y. W. Wu
Elucidation Of The Anti-Autophagy Mechanism Of The Legionella Effector Ravz Using Semisynthetic Lc3 Proteins.
Elife V. 6 2017
PubMed-ID: 28395732  |  Reference-DOI: 10.7554/ELIFE.23905

(-) Compounds

Molecule 1 - LEGIONELLA PNEUMOPHILA EFFECTOR PROTEIN RAVZ
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: POPIN
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: LPG1683
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA ATCC 33215
    Organism Taxid: 933085

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric Unit (2, 5)
No.NameCountTypeFull Name
1BA2Ligand/IonBARIUM ION
2GOL3Ligand/IonGLYCEROL
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1BA-1Ligand/IonBARIUM ION
2GOL6Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:135 , ASP A:137 , ASP A:140 , GOL A:603binding site for residue BA A 601
2AC2SOFTWAREVAL A:135 , ASP A:137 , BA A:601binding site for residue GOL A 603
3AC3SOFTWARECYS A:425 , VAL A:426binding site for residue GOL A 604
4AC4SOFTWARESER A:56binding site for residue GOL A 605

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MS7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MS7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MS7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MS7)

(-) Exons   (0, 0)

(no "Exon" information available for 5MS7)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:370
                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......hhhhh.hhhhhhhhhhhhh..........eee.........eeeeee.....eeeee......eeee........eeehhhhhhhhhhhhhhhhh....eeeeeeeeeee........eeeeeeeeee....eeeeeeee......................hhhhhhhhhhhhh.....ee...eeee...hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhhh......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh..ee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ms7 A  48 TSIYPPETSWEVNKGMNSSRLHKLYSLFFDKSSAFYLGDDVSVLEDKPLTGAYGFQSKKNDQQIFLFRPDSDYVAGYHVDAKSDAGWVNDKLDRRLSEISEFCSKATQPATFILPFVEMPTDITKGVQHQVLLTISYDPKSKQLTPTVYDSIGRDTYSESLSSYFKGKYRTTCDEILTQSIEKAIKSTDFTLGKFTRAAYNGNCGSYTFRTIKEVISSSAQGTEVKIPGSGYITSNSYLTSQHVQDIESCIKYRNLGVVDIESALTEGKTLPVQLSEFIVALEDYGKLRSQQSGYSKTAKLTAVELLIGILNDIKGKNEISESQYDKLVKEVDCLMDSSLGKLVQFHLKNLGAESLQKLVLPCVKFDDTI 432
                                    57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247||     264       274       284       294       304       314       324       334       344  ||   362       372       382       392       402       412       422       432
                                                                                                                                                                                                                                  248|                                                                                        347|                                                                            
                                                                                                                                                                                                                                   256                                                                                         356
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MS7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MS7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MS7)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5MS7)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5ZUV9_LEGPH | Q5ZUV9: 5cqc 5hzy 5io3 5izv 5ms2 5ms5 5ms8

(-) Related Entries Specified in the PDB File

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