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(-) Description

Title :  NUCLEOTIDE-FREE KINESIN-1 MOTOR DOMAIN T92V MUTANT, P1 CRYSTAL FORM
 
Authors :  L. Cao, B. Gigant
Date :  06 Sep 16  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.88
Chains :  Asym. Unit :  A,B,C,D,E,K
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  K  (1x)
Keywords :  Kinesin Motor Domain, Adp Dissociation, Nucleotide-Free, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Cao, S. Cantos-Fernandes, B. Gigant
The Structural Switch Of Nucleotide-Free Kinesin.
Sci Rep V. 7 42558 2017
PubMed-ID: 28195215  |  Reference-DOI: 10.1038/SREP42558

(-) Compounds

Molecule 1 - KINESIN-1 HEAVY CHAIN
    Chains: A, B, C, D, E, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: KIF5B, KNS, KNS1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CONVENTIONAL KINESIN HEAVY CHAIN,UBIQUITOUS KINESIN HEAVY CHAIN,UKHC

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEK
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      K

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1SO412Ligand/IonSULFATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:88 , SER A:89 , GLY A:90 , LYS A:91 , VAL A:92 , HOH A:537binding site for residue SO4 A 401
02AC2SOFTWAREGLY A:85 , THR A:87 , LYS A:91 , HIS A:200 , SER A:201 , SER A:202 , ALA A:233 , GLY A:234 , HOH A:537binding site for residue SO4 A 402
03AC3SOFTWARESER B:88 , SER B:89 , GLY B:90 , LYS B:91 , VAL B:92 , HIS B:93binding site for residue SO4 B 401
04AC4SOFTWARESER C:88 , SER C:89 , GLY C:90 , LYS C:91 , VAL C:92 , HIS C:93 , HOH C:523binding site for residue SO4 C 401
05AC5SOFTWARESER C:133 , PHE C:135 , VAL C:165 , GLU C:170 , LEU C:209 , HOH C:502binding site for residue SO4 C 402
06AC6SOFTWARESER D:88 , SER D:89 , GLY D:90 , LYS D:91 , VAL D:92 , HIS D:93binding site for residue SO4 D 401
07AC7SOFTWAREGLN B:218 , VAL D:275 , PRO D:276 , TYR D:277 , ARG D:278binding site for residue SO4 D 402
08AC8SOFTWAREGLY B:76 , TYR B:77 , ASN B:78 , ASN B:293 , GLN D:221 , HOH D:524binding site for residue SO4 D 403
09AC9SOFTWAREGLY D:85 , GLN D:86 , THR D:87 , LYS D:91 , SER D:202 , LEU D:232 , GLY D:234binding site for residue SO4 D 404
10AD1SOFTWARESER E:88 , SER E:89 , GLY E:90 , LYS E:91 , VAL E:92 , HIS E:93binding site for residue SO4 E 401
11AD2SOFTWARESER K:88 , SER K:89 , GLY K:90 , LYS K:91 , VAL K:92 , HIS K:93 , HOH K:503binding site for residue SO4 K 401
12AD3SOFTWAREGLY A:76 , TYR A:77 , GLY K:76 , HOH K:504 , HOH K:505binding site for residue SO4 K 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LT4)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Glu B:103 -Gly B:104
2Pro C:17 -Leu C:18
3Gly C:26 -Asp C:27
4Glu C:103 -Gly C:104
5Pro D:17 -Leu D:18
6Glu E:103 -Gly E:104
7Pro K:17 -Leu K:18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LT4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LT4)

(-) Exons   (0, 0)

(no "Exon" information available for 5LT4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee................eee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhh...ee...ee..eeeeeeeeeeee.....eeeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt4 A   4 LAESNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    13        23        33        43        53        63        73        83        93       103       113       124       134       144       154       164       174       184       194|      208       218       228       238||     251       261       271       281       291       301       311       321   
                                                                                                                                                122|                                                                   194|                                     239|                                                                                 
                                                                                                                                                 124                                                                    199                                      243                                                                                 


Chain B from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee...hhhhhh.......eee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeee..eeee..........eee.....eee.....eee.hhhhhhhhhhhhhh...........eeeeeeeeeeee....eeeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt4 B   6 ESNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195|      210       220       230      |246       256       266       276       286       296       306       316        
                                                                                                                                                                                                                       195|                                 237|                                                                                
                                                                                                                                                                                                                        201                                  244                                                                                


Chain C from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..............ee....eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhh....eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhh...........eeeeeeeeeeee....eeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt4 C   4 LAESNIKVMCRFRPLNESERGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    13        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       200       210       220       230       246       256       266       276       286       296       306       316        
                                             22|                                                                                                                                                                      194|                                   238|                                                                               
                                              25                                                                                                                                                                       200                                    245                                                                               


Chain D from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee....hhhhh.....eeee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhh....eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhh...ee....ee..eeeeeeeeeeee.....eeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt4 D   6 ESNIKVMCRFRPLNSEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
                                    15   ||   26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       199       209       219       229       244       254       264       274       284       294       304       314       324 
                                        19|                                                                                                                                                                           195|                                    238|                                                                                 
                                         21                                                                                                                                                                            199                                     244                                                                                 


Chain E from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...........eee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhh...ee.....ee..eeeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt4 E   7 SNIKVMCRFRPLNESDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    16    ||  31        41        51        61        71        81        91       101       111       121||     132       142       152       162       172       182       192 ||    204       214       224       234   ||  249       259       269       279       289       299       309       319     
                                         21|                                                                                            122|                                                                   194|                                      238|                                                                                
                                          27                                                                                             124                                                                    197                                       244                                                                                


Chain K from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....hhhhh.....eee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhhhh..eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhh...........eeeeeeeeeeee.....eeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt4 K   5 AESNIKVMCRFRPLNEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    14    ||  26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186      |201       211       221       231      |247       257       267       277       287       297       307       317       
                                         19|                                                                                                                                                                        193|                                    238|                                                                               
                                          22                                                                                                                                                                         199                                     245
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LT4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LT4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LT4)

(-) Gene Ontology  (29, 29)

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  5lt4
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 Related Entries

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UniProtKB/Swiss-Prot
        KINH_HUMAN | P33176: 1bg2 1mkj 2p4n 3j8x 3j8y 4hna 4lnu 5lt0 5lt1 5lt2 5lt3

(-) Related Entries Specified in the PDB File

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