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(-) Description

Title :  NUCLEOTIDE-FREE KINESIN-1 MOTOR DOMAIN T87A MUTANT, P1 CRYSTAL FORM
 
Authors :  L. Cao, B. Gigant
Date :  06 Sep 16  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.59
Chains :  Asym. Unit :  A,B,C,D,E,K
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  K  (1x)
Keywords :  Kinesin Motor Domain, Adp Dissociation, Nucleotide-Free, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Cao, S. Cantos-Fernandes, B. Gigant
The Structural Switch Of Nucleotide-Free Kinesin.
Sci Rep V. 7 42558 2017
PubMed-ID: 28195215  |  Reference-DOI: 10.1038/SREP42558

(-) Compounds

Molecule 1 - KINESIN-1 HEAVY CHAIN
    Chains: A, B, C, D, E, K
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: KIF5B, KNS, KNS1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CONVENTIONAL KINESIN HEAVY CHAIN,UBIQUITOUS KINESIN HEAVY CHAIN,UKHC

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEK
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      K

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:88 , SER A:89 , GLY A:90 , LYS A:91 , THR A:92binding site for residue SO4 A 401
2AC2SOFTWARESER B:88 , SER B:89 , GLY B:90 , LYS B:91 , THR B:92binding site for residue SO4 B 401
3AC3SOFTWARESER C:88 , SER C:89 , GLY C:90 , LYS C:91 , THR C:92binding site for residue SO4 C 401
4AC4SOFTWARESER D:88 , SER D:89 , GLY D:90 , LYS D:91 , THR D:92binding site for residue SO4 D 401
5AC5SOFTWAREGLN B:218 , TYR D:274 , VAL D:275 , TYR D:277 , GLN D:287binding site for residue SO4 D 402
6AC6SOFTWAREASN B:78 , ASP B:288 , ASN B:293 , GLN D:221 , HOH D:515 , HOH D:518binding site for residue SO4 D 403
7AC7SOFTWARESER E:88 , SER E:89 , GLY E:90 , LYS E:91 , THR E:92binding site for residue SO4 E 401
8AC8SOFTWARESER K:88 , SER K:89 , GLY K:90 , LYS K:91 , THR K:92 , HOH K:504binding site for residue SO4 K 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LT3)

(-) Cis Peptide Bonds  (9, 9)

Asymmetric Unit
No.Residues
1Glu A:103 -Gly A:104
2Pro B:17 -Leu B:18
3Glu B:103 -Gly B:104
4Glu C:103 -Gly C:104
5Pro D:17 -Leu D:18
6Asp E:101 -Pro E:102
7Pro E:102 -Glu E:103
8Glu E:103 -Gly E:104
9Pro K:17 -Leu K:18

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LT3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LT3)

(-) Exons   (0, 0)

(no "Exon" information available for 5LT3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:307
                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...............ee....eeee..eeee..eee....hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhhhh.........eeeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt3 A   6 ESNIKVMCRFRPLNSEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQASSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    15   ||   26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       201       211       221       231      |247       257       267       277       287       297       307       317       
                                        19|                                                                                                                                                                          194|                                   238|                                                                               
                                         21                                                                                                                                                                           200                                    245                                                                               


Chain B from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...........ee....eeee..eeee..eee....hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhhh.........eeeeeeeeeeee.....eeeeeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt3 B   6 ESNIKVMCRFRPLNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQASSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    15  ||    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   ||  206       216       226       236 ||    249       259       269       279       289       299       309       319     
                                       18|                                                                                                                                                                       194|                                  238|                                                                                  
                                        24                                                                                                                                                                        201                                   242                                                                                  


Chain C from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee.............ee....eeee..eeee..eee....hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhhh......eeeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lt3 C   6 ESNIKVMCRFRPLNESRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQASSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    15     || 28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188   ||  207       217       227       237||     254       264       274       284       294       304       314       324
                                          21|                                                                                                                                                                    192|                                 238|                                                                              
                                           25                                                                                                                                                                     202                                  246                                                                              


Chain D from PDB  Type:PROTEIN  Length:311
                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...............eee....eeee..eeee..eee....hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhhhh...........eeeeeeeeeeee.....eeeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt3 D   6 ESNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQASSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195|      208       218       228       238|      253       263       273       283       293       303       313       323 
                                                                                                                                                                                                                       195|                                    238|                                                                                
                                                                                                                                                                                                                        199                                     244                                                                                


Chain E from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...........ee....eeee..eeee..eee....hhhhhhhhhhhhhhhhhhh...eeeeeee....hhhhhhh........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhhh..........eeeeeeeeeeee.....eeeeeeeeeee....hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh........eeeeeeee.....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt3 E   6 ESNIKVMCRFRPLNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQASSGKTHTMEGKHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    15   ||   30        40        50        60        70        80        90       101       111       121       131       141       151       161       171       181       191  ||   206       216       226       236       246       256       266       276       286       296       306       316        
                                        19|                                                                       98|                                                                                           194|                                                                                                                            
                                         25                                                                       100                                                                                            200                                                                                                                            


Chain K from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee...............ee....eeee..eeee..eee....hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee.........eeee.....eeee....eee.hhhhhhhhhhhhhhh..........eeeeeeeeeeee.....eeeeeeeeeee....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.....eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5lt3 K   6 ESNIKVMCRFRPLNSEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQASSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    15   ||   26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186      |201       211       221       231      |242       252       262       272       282       292       302       312       322  
                                        19|                                                                                                                                                                         193|                                    238|                                                                                    
                                         21                                                                                                                                                                          199                                     240
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LT3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LT3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LT3)

(-) Gene Ontology  (29, 29)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KINH_HUMAN | P33176: 1bg2 1mkj 2p4n 3j8x 3j8y 4hna 4lnu 5lt0 5lt1 5lt2 5lt4

(-) Related Entries Specified in the PDB File

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