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(-) Description

Title :  NUCLEOTIDE-FREE KINESIN-1 MOTOR DOMAIN, P212121 CRYSTAL FORM
 
Authors :  L. Cao, B. Gigant
Date :  06 Sep 16  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinesin Motor Domain, Adp Dissociation, Nucleotide-Free, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Cao, S. Cantos-Fernandes, B. Gigant
The Structural Switch Of Nucleotide-Free Kinesin.
Sci Rep V. 7 42558 2017
PubMed-ID: 28195215  |  Reference-DOI: 10.1038/SREP42558

(-) Compounds

Molecule 1 - KINESIN-LIKE PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: KIF5B
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NUCLEOTIDE-FREE KINESIN-1 MOTOR DOMAIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2SO41Ligand/IonSULFATE ION
3SR1Ligand/IonSTRONTIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:86 , THR A:87 , SER A:88 , SER A:89 , GLY A:90 , LYS A:91 , THR A:92 , HOH A:559 , HOH A:562 , HOH A:588binding site for residue SO4 A 401
2AC2SOFTWAREASP A:140 , HIS A:205 , ASN A:255 , SER A:257binding site for residue SR A 402
3AC3SOFTWARESER A:133 , TYR A:164 , VAL A:165 , TYR A:228binding site for residue ACT A 403
4AC4SOFTWAREGLN A:53binding site for residue ACT A 404
5AC5SOFTWARETYR A:138 , ASN A:196 , HIS A:200 , HOH A:509binding site for residue ACT A 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LT0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:7 -Asn A:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LT0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LT0)

(-) Exons   (0, 0)

(no "Exon" information available for 5LT0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhhhh.....eee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeeee....hhhhhhh.........hhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee..........eee.....eee.....eee.hhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeeeeee.....eeeeeeeeee........hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt0 A   7 SNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
                                    16        26        36        46        56        66        76        86        96       106       116     ||127       137       147       157       167       177       187       197       207       217       227       252       262       272       282       292       302       312       322   
                                                                                                                                             122|                                                                                                             236|                                                                         
                                                                                                                                              124                                                                                                              252
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LT0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LT0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LT0)

(-) Gene Ontology  (29, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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  5lt0
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  KINH_HUMAN | P33176
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KINH_HUMAN | P33176: 1bg2 1mkj 2p4n 3j8x 3j8y 4hna 4lnu 5lt1 5lt2 5lt3 5lt4
        Q6P164_HUMAN | Q6P164: 5lt1 5lt2

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5LT0)