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(-) Description

Title :  NUCLEOTIDE-FREE KINESIN-1 MOTOR DOMAIN T92V MUTANT, P21 CRYSTAL FORM
 
Authors :  L. Cao, B. Gigant
Date :  06 Sep 16  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Kinesin Motor Domain, Adp Dissociation, Nucleotide-Free, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Cao, S. Cantos-Fernandes, B. Gigant
The Structural Switch Of Nucleotide-Free Kinesin.
Sci Rep V. 7 42558 2017
PubMed-ID: 28195215  |  Reference-DOI: 10.1038/SREP42558

(-) Compounds

Molecule 1 - KINESIN-LIKE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Taxid: 511693
    Gene: KIF5B
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NUCLEOTIDE-FREE KINESIN-1 T92V MUTANT

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2SO43Ligand/IonSULFATE ION
3SR1Ligand/IonSTRONTIUM ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2SO41Ligand/IonSULFATE ION
3SR-1Ligand/IonSTRONTIUM ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2SO42Ligand/IonSULFATE ION
3SR-1Ligand/IonSTRONTIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:86 , THR A:87 , SER A:88 , SER A:89 , GLY A:90 , LYS A:91 , VAL A:92 , HOH A:544 , HOH A:566 , HOH A:629binding site for residue SO4 A 401
2AC2SOFTWAREARG A:143 , VAL A:192 , VAL A:194 , HOH A:528 , HOH A:558binding site for residue ACT A 402
3AC3SOFTWAREHIS A:191 , HOH A:556binding site for residue ACT A 403
4AC4SOFTWAREGLN B:86 , THR B:87 , SER B:88 , SER B:89 , GLY B:90 , LYS B:91 , VAL B:92 , HOH B:551 , HOH B:565binding site for residue SO4 B 401
5AC5SOFTWARELEU B:317 , HOH B:697binding site for residue SO4 B 402
6AC6SOFTWAREASN B:253binding site for residue SR B 403
7AC7SOFTWARELYS B:187 , HIS B:191 , HOH B:528 , HOH B:529binding site for residue ACT B 404
8AC8SOFTWAREGLU B:96 , ILE B:108 , TYR B:134 , SER B:206 , LEU B:229 , HOH B:509binding site for residue ACT B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LT1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LT1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LT1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LT1)

(-) Exons   (0, 0)

(no "Exon" information available for 5LT1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...hhhhhhhh.....eee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee..........eee.....eee.....ee..hhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeeeeee....eeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt1 A   7 SNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKT 324
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236 ||    255       265       275       285       295       305       315         
                                                                                                                                                                                                                                                                 238|                                                                            
                                                                                                                                                                                                                                                                  248                                                                            


Chain B from PDB  Type:PROTEIN  Length:313
                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee...hhhhhhhh.....eee...eeee..eeee..eee....hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhh.........hhhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee..........eee.....eee.....eee.hhhhhhhhhhhhhhhh.....hhhhhhhh.eeeeeeeeeeee.....eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lt1 B   3 DLAESNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDAAKKIVKDVLEGYNGTIFAYGQTSSGKVHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGATERFVSSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNARTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    || 252       262       272       282       292       302       312       322   
                                                                                                                                                                                                                                                                    237|                                                                             
                                                                                                                                                                                                                                                                     248
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LT1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LT1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LT1)

(-) Gene Ontology  (29, 35)

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  5lt1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KINH_HUMAN | P33176: 1bg2 1mkj 2p4n 3j8x 3j8y 4hna 4lnu 5lt0 5lt2 5lt3 5lt4
        Q6P164_HUMAN | Q6P164: 5lt0 5lt2

(-) Related Entries Specified in the PDB File

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