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(-) Description

Title :  HUMAN UBIQUITOUS KINESIN MOTOR DOMAIN
 
Authors :  F. J. Kull, E. P. Sablin, R. Lau, R. J. Fletterick, R. D. Vale
Date :  04 Jun 98  (Deposition) - 14 Oct 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Motor Protein, Atpase, Microtubule Associated (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. J. Kull, E. P. Sablin, R. Lau, R. J. Fletterick, R. D. Vale
Crystal Structure Of The Kinesin Motor Domain Reveals A Structural Similarity To Myosin.
Nature V. 380 550 1996
PubMed-ID: 8606779  |  Reference-DOI: 10.1038/380550A0
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - KINESIN
    Cell LineBL21
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET
    Expression System StrainBL21 (DE3)
    Expression System Taxid469008
    FragmentMOTOR DOMAIN
    OrganUBIQUITOUS
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
3MG1Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:92 , ADP A:401 , HOH A:523 , HOH A:526 , HOH A:527 , HOH A:528BINDING SITE FOR RESIDUE MG A 402
2AC2SOFTWAREMET A:95 , GLU A:96 , ILE A:108 , LEU A:229BINDING SITE FOR RESIDUE ACT A 403
3AC3SOFTWAREALA A:193 , HOH A:513 , HOH A:549BINDING SITE FOR RESIDUE ACT A 404
4AC4SOFTWAREHIS A:191 , MET A:197 , GLU A:220BINDING SITE FOR RESIDUE ACT A 405
5AC5SOFTWAREARG A:14 , ARG A:16 , PRO A:17 , GLN A:86 , THR A:87 , SER A:88 , SER A:89 , GLY A:90 , LYS A:91 , THR A:92 , HIS A:93 , MG A:402 , HOH A:501 , HOH A:514 , HOH A:525 , HOH A:526 , HOH A:527 , HOH A:570 , HOH A:642BINDING SITE FOR RESIDUE ADP A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BG2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1BG2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1BG2)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KINESIN_MOTOR_2PS50067 Kinesin motor domain profile.KINH_HUMAN8-325  1A:8-325
2KINESIN_MOTOR_1PS00411 Kinesin motor domain signature.KINH_HUMAN225-236  1A:225-236

(-) Exons   (11, 11)

Asymmetric/Biological Unit (11, 11)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003024181aENSE00001551533chr10:32345359-32344776584KINH_HUMAN1-42421A:3-4240
1.2ENST000003024182ENSE00001163825chr10:32337479-3233739288KINH_HUMAN43-72301A:43-7230
1.3ENST000003024183ENSE00001163823chr10:32329385-3232931274KINH_HUMAN72-96251A:72-9625
1.4ENST000003024184ENSE00001163819chr10:32328359-32328255105KINH_HUMAN97-131351A:97-13135
1.5ENST000003024185ENSE00001163815chr10:32327754-3232770649KINH_HUMAN132-148171A:132-14817
1.6ENST000003024186ENSE00001163809chr10:32327146-3232709156KINH_HUMAN148-166191A:148-16619
1.7ENST000003024187ENSE00001163802chr10:32326535-3232644888KINH_HUMAN167-196301A:167-19630
1.8ENST000003024188ENSE00001163795chr10:32326306-32326182125KINH_HUMAN196-237421A:196-23742
1.9ENST000003024189ENSE00001799163chr10:32324922-32324818105KINH_HUMAN238-272351A:238-27235
1.10ENST0000030241810ENSE00001163782chr10:32324595-32324450146KINH_HUMAN273-321491A:273-32149
1.11ENST0000030241811ENSE00001163777chr10:32323766-32323618149KINH_HUMAN321-371511A:321-3255
1.12ENST0000030241812ENSE00001163772chr10:32322966-32322773194KINH_HUMAN371-435650--
1.13ENST0000030241813ENSE00001600556chr10:32321702-3232163469KINH_HUMAN436-458230--
1.14ENST0000030241814ENSE00001163763chr10:32320207-32320001207KINH_HUMAN459-527690--
1.15aENST0000030241815aENSE00001163760chr10:32317499-32317356144KINH_HUMAN528-575480--
1.16ENST0000030241816ENSE00001163755chr10:32311964-32311776189KINH_HUMAN576-638630--
1.17ENST0000030241817ENSE00001163747chr10:32311185-32311068118KINH_HUMAN639-678400--
1.18ENST0000030241818ENSE00001376582chr10:32310215-3231015462KINH_HUMAN678-698210--
1.19aENST0000030241819aENSE00001387593chr10:32310059-32309950110KINH_HUMAN699-735370--
1.20ENST0000030241820ENSE00001163734chr10:32308887-32308786102KINH_HUMAN735-769350--
1.21ENST0000030241821ENSE00001163729chr10:32307490-3230743061KINH_HUMAN769-789210--
1.22ENST0000030241822ENSE00001163722chr10:32307315-3230724472KINH_HUMAN790-813240--
1.23ENST0000030241823ENSE00001163716chr10:32307084-32306980105KINH_HUMAN814-848350--
1.24bENST0000030241824bENSE00001163712chr10:32306287-32306071217KINH_HUMAN849-921730--
1.25ENST0000030241825ENSE00001135810chr10:32304587-32304437151KINH_HUMAN921-963430--
1.26bENST0000030241826bENSE00001872441chr10:32300444-322979382507KINH_HUMAN-00--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:323
 aligned with KINH_HUMAN | P33176 from UniProtKB/Swiss-Prot  Length:963

    Alignment length:323
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322   
           KINH_HUMAN     3 DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
               SCOP domains d1bg2a_ A: Kinesin                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1bg2A00 A:3-325 Kinesin                                                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee....hhhhhh......eee...eeee..eeee..eee.....hhhhhhhh.hhhhhhhh....eeeeee......hhhhh...........hhhhhhhhhhhhhhhh...eeeeeeeeeeeee..eeee..........eee.....eee.....eee..hhhhhhhhhhhhhhhh.....hhhhhhh.eeeeeeeeeeee.....eeeeeeeeee........................hhhhhhhhhhhhhh.......hhh.hhhhhhhh......eeeeeeee...hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----KINESIN_MOTOR_2  PDB: A:8-325 UniProt: 8-325                                                                                                                                                                                                                                                                                   PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KINESIN_MOTO----------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: A:3-42 UniProt: 1-42    Exon 1.2  PDB: A:43-72        ------------------------Exon 1.4  PDB: A:97-131            Exon 1.5         ------------------Exon 1.7  PDB: A:167-196      -----------------------------------------Exon 1.9  PDB: A:238-272           Exon 1.10  PDB: A:273-321 UniProt: 273-321       ---- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.3  PDB: A:72-96   ---------------------------------------------------Exon 1.6           -----------------------------Exon 1.8  PDB: A:196-237 UniProt: 196-237 -----------------------------------------------------------------------------------1.11  Transcript 1 (2)
                 1bg2 A   3 DLAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1BG2)

(-) Gene Ontology  (29, 29)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (KINH_HUMAN | P33176)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0008574    ATP-dependent microtubule motor activity, plus-end-directed    Catalysis of movement along a microtubule toward the plus end, coupled to the hydrolysis of ATP.
    GO:0008017    microtubule binding    Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
    GO:0003777    microtubule motor activity    Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0007028    cytoplasm organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0030705    cytoskeleton-dependent intracellular transport    The directed movement of substances along cytoskeletal fibers such as microfilaments or microtubules within a cell.
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
    GO:0072383    plus-end-directed vesicle transport along microtubule    The directed movement of a vesicle towards the plus end of a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
    GO:0090004    positive regulation of establishment of protein localization to plasma membrane    Any process that increases the frequency, rate or extent of the directed movement of a protein to a specific location in the plasma membrane.
    GO:0043268    positive regulation of potassium ion transport    Any process that activates or increases the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0032230    positive regulation of synaptic transmission, GABAergic    Any process that activates, maintains or increases the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA).
    GO:0042391    regulation of membrane potential    Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.
    GO:0035617    stress granule disassembly    The disaggregation of a stress granule into its constituent protein and RNA parts.
    GO:0047496    vesicle transport along microtubule    The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
cellular component
    GO:0035253    ciliary rootlet    A cytoskeleton-like structure, originating from the basal body at the proximal end of a cilium, and extending proximally toward the cell nucleus. Rootlets are typically 80-100 nm in diameter and contain cross striae distributed at regular intervals of approximately 55-70 nm.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0030139    endocytic vesicle    A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting.
    GO:0005871    kinesin complex    Any complex that includes a dimer of molecules from the kinesin superfamily, a group of related proteins that contain an extended region of predicted alpha-helical coiled coil in the main chain that likely produces dimerization. The native complexes of several kinesin family members have also been shown to contain additional peptides, often designated light chains as all of the noncatalytic subunits that are currently known are smaller than the chain that contains the motor unit. Kinesin complexes generally possess a force-generating enzymatic activity, or motor, which converts the free energy of the gamma phosphate bond of ATP into mechanical work.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043227    membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
    GO:0005815    microtubule organizing center    An intracellular structure that can catalyze gamma-tubulin-dependent microtubule nucleation and that can anchor microtubules by interacting with their minus ends, plus ends or sides.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0031982    vesicle    Any small, fluid-filled, spherical organelle enclosed by membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KINH_HUMAN | P331761mkj 2p4n 3j8x 3j8y 4hna 4lnu 5lt0 5lt1 5lt2 5lt3 5lt4

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1BG2)