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(-) Description

Title :  HUMAN VINCULIN R903Q, D907R, R910T MUTANT(RESIDUES 891-1066)
 
Authors :  K. Chinthalapudi, T. Izard
Date :  27 Jul 16  (Deposition) - 31 Aug 16  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  5-Helix Bundle, Cytoskelatal Protein, Phospholipids, Cell Adhesion, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Chinthalapudi, E. S. Rangarajan, D. T. Brown, T. Izard
Differential Lipid Binding Of Vinculin Isoforms Promotes Quasi-Equivalent Dimerization.
Proc. Natl. Acad. Sci. Usa V. 113 9539 2016
PubMed-ID: 27503891  |  Reference-DOI: 10.1073/PNAS.1600702113

(-) Compounds

Molecule 1 - VINCULIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: VCL
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: METAVINCULIN,MV

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5L0J)

(-) Sites  (0, 0)

(no "Site" information available for 5L0J)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L0J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L0J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L0J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L0J)

(-) Exons   (0, 0)

(no "Exon" information available for 5L0J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                      
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5l0j A  891 GEVINQPMMMAAQQLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKTDAGFTLRWVRKTP 1063
                                   900       910       920       930       940       950       960       970       980       990      1000     |1016      1026      1036      1046||    1058     
                                                                                                                                            1006|                              1047|             
                                                                                                                                             1013                               1050             


Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5l0j B  893 VINQPMMMAAQQLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPW 1064
                                   902       912       922       932       942       952       962       972       982       992      1002   || 1018      1028      1038      1048      1058      
                                                                                                                                          1006|                                                   
                                                                                                                                           1013
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L0J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L0J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L0J)

(-) Gene Ontology  (48, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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  5l0j
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  VINC_HUMAN | P18206
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VINC_HUMAN | P18206: 1rkc 1rke 1syq 1tr2 1ydi 2gww 2hsq 2ibf 3h2u 3h2v 3jbk 3myi 3rf3 3s90 3tj5 3tj6 3vf0 4dj9 4ehp 4ln2 4lnp 4pr9 5l0c 5l0d 5l0f 5l0g 5l0h 5l0i

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5L0J)