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(-) Description

Title :  HUMAN METAVINCULIN MVT R975W CARDIOMYOPATHY-ASSOCIATED MUTANT (RESIDUES 959-1134)
 
Authors :  K. Chinthalapudi, T. Izard
Date :  27 Jul 16  (Deposition) - 31 Aug 16  (Release) - 07 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym./Biol. Unit :  A
Keywords :  5-Helix Bundle, Cytoskeletal Protein, Cell Adhesion, Cardiomyopathy (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Chinthalapudi, E. S. Rangarajan, D. T. Brown, T. Izard
Differential Lipid Binding Of Vinculin Isoforms Promotes Quasi-Equivalent Dimerization.
Proc. Natl. Acad. Sci. Usa V. 113 9539 2016
PubMed-ID: 27503891  |  Reference-DOI: 10.1073/PNAS.1600702113

(-) Compounds

Molecule 1 - VINCULIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentUNP RESIDUES 959-1134
    GeneVCL
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymMETAVINCULIN,MV

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2NA1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:981 , SER A:982 , LYS A:983 , LYS A:1129binding site for residue GOL A 2500
2AC2SOFTWARETHR A:1130 , HOH A:2619binding site for residue NA A 2501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5L0I)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5L0I)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5L0I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5L0I)

(-) Exons   (0, 0)

(no "Exon" information available for 5L0I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5l0i A  960 QPVNQPILAAAQSLHWEATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTPWYQ 1134
                                   969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129     

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5L0I)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5L0I)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5L0I)

(-) Gene Ontology  (48, 48)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VINC_HUMAN | P182061rkc 1rke 1syq 1tr2 1ydi 2gww 2hsq 2ibf 3h2u 3h2v 3jbk 3myi 3rf3 3s90 3tj5 3tj6 3vf0 4dj9 4ehp 4ln2 4lnp 4pr9 5l0c 5l0d 5l0f 5l0g 5l0h 5l0j

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5L0I)