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(-) Description

Title :  HUMAN RAVER1 RRM1 DOMAIN IN COMPLEX WITH HUMAN VINCULIN TAIL DOMAIN VT
 
Authors :  J. H. Lee, E. S. Rangarajan, S. D. Yogesha, T. Izard
Date :  14 Apr 09  (Deposition) - 28 Jul 09  (Release) - 28 Jul 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,G  (1x)
Biol. Unit 4:  D,H  (1x)
Keywords :  Focal Adhesion, Actin Cytoskeleton, Rnp Motif, Rna Binding, Alternative Splicing, Cytoplasm, Nucleus, Phosphoprotein, Rna-Binding, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. H. Lee, E. S. Rangarajan, S. D. Yogesha, T. Izard
Raver1 Interactions With Vinculin And Rna Suggest A Feed-Forward Pathway In Directing Mrna To Focal Adhesions
Structure V. 17 833 2009
PubMed-ID: 19523901  |  Reference-DOI: 10.1016/J.STR.2009.04.010
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - VINCULIN
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentC-TERMINAL DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - RAVER-1
    ChainsE, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentRRM 1 DOMAIN
    GeneRAVER1, KIAA1978
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymRIBONUCLEOPROTEIN PTB-BINDING 1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A   E   
Biological Unit 2 (1x) B   F  
Biological Unit 3 (1x)  C   G 
Biological Unit 4 (1x)   D   H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3H2V)

(-) Sites  (0, 0)

(no "Site" information available for 3H2V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H2V)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser D:941 -Gly D:942
2Ala D:1052 -Gly D:1053

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H2V)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.RAVR1_HUMAN132-210
59-130
 
 
 
  4-
E:59-130
F:59-130
G:59-130
H:59-130
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.RAVR1_HUMAN132-210
59-130
 
 
 
  1-
E:59-130
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.RAVR1_HUMAN132-210
59-130
 
 
 
  1-
-
F:59-130
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.RAVR1_HUMAN132-210
59-130
 
 
 
  1-
-
-
G:59-130
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.RAVR1_HUMAN132-210
59-130
 
 
 
  1-
-
-
-
H:59-130

(-) Exons   (4, 16)

Asymmetric Unit (4, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002119981aENSE00002146319chr10:75757872-75758133262VINC_HUMAN1-56560--
1.2aENST000002119982aENSE00001607712chr10:75802841-7580291171VINC_HUMAN57-80240--
1.4ENST000002119984ENSE00001024254chr10:75830428-75830578151VINC_HUMAN80-130510--
1.5ENST000002119985ENSE00001024245chr10:75830733-75830841109VINC_HUMAN131-167370--
1.6ENST000002119986ENSE00001024249chr10:75832488-75832610123VINC_HUMAN167-208420--
1.7aENST000002119987aENSE00001024263chr10:75834501-75834661161VINC_HUMAN208-261540--
1.8ENST000002119988ENSE00001024248chr10:75842212-7584230291VINC_HUMAN262-292310--
1.9aENST000002119989aENSE00000986356chr10:75843124-75843271148VINC_HUMAN292-341500--
1.10ENST0000021199810ENSE00000986357chr10:75848954-75849107154VINC_HUMAN341-392520--
1.11ENST0000021199811ENSE00000986358chr10:75849781-75849956176VINC_HUMAN393-451590--
1.12ENST0000021199812ENSE00001024262chr10:75854029-75854219191VINC_HUMAN451-515650--
1.13ENST0000021199813ENSE00000986360chr10:75855414-75855613200VINC_HUMAN515-581670--
1.14ENST0000021199814ENSE00000986361chr10:75856962-75857090129VINC_HUMAN582-624430--
1.15aENST0000021199815aENSE00000986362chr10:75860706-75860855150VINC_HUMAN625-674500--
1.16ENST0000021199816ENSE00000986363chr10:75863578-75863686109VINC_HUMAN675-711370--
1.17cENST0000021199817cENSE00000986364chr10:75864809-75865111303VINC_HUMAN711-8121020--
1.18ENST0000021199818ENSE00000986365chr10:75866988-75867112125VINC_HUMAN812-853420--
1.19bENST0000021199819bENSE00000834577chr10:75868729-75868914186VINC_HUMAN854-915624A:884-915 (gaps)
B:884-915 (gaps)
C:884-915 (gaps)
D:884-915 (gaps)
32
32
32
32
1.20ENST0000021199820ENSE00000709651chr10:75871667-75871870204VINC_HUMAN916-983680--
1.21ENST0000021199821ENSE00000709670chr10:75873942-75874145204VINC_HUMAN984-1051684A:916-983
B:916-983
C:916-983
D:916-983
68
68
68
68
1.22ENST0000021199822ENSE00000986366chr10:75874553-75874657105VINC_HUMAN1052-1086354A:984-1018
B:984-1018
C:984-1018
D:984-1018
35
35
35
35
1.23aENST0000021199823aENSE00001373600chr10:75877781-758799102130VINC_HUMAN1087-1134484A:1019-1061
B:1019-1063 (gaps)
C:1019-1063 (gaps)
D:1019-1063
43
45
45
45

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with B4DTM7_HUMAN | B4DTM7 from UniProtKB/TrEMBL  Length:327

    Alignment length:178
                                   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314        
        B4DTM7_HUMAN    145 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRK  322
               SCOP domains d3h2v    a_ A: automated matches                                                                                                                                                   SCOP domains
               CATH domains 3h2vA    00 A:884-1061  [code=1.20.120.230, no name defined]                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3h2v A  884 EFPEQ----VINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRK 1061
                                |  893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053        
                              888  893                                                                                                                                                                        

Chain A from PDB  Type:PROTEIN  Length:174
 aligned with VINC_HUMAN | P18206 from UniProtKB/Swiss-Prot  Length:1134

    Alignment length:246
                                   893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      
          VINC_HUMAN    884 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRK 1129
               SCOP domains d3h2v    a_ A: automated matches                                                                                                                                                                                                                       SCOP domains
               CATH domains 3h2vA    00 A:884-1061  [code=1.                                                                    20.120.230, no name defined]                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhhhhhh.....--------------------------------------------------------------------.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.19b  PDB: A:884-915 (gapsExon 1.20  PDB: - UniProt: 916-983                                  Exon 1.21  PDB: A:916-983 UniProt: 984-1051                         Exon 1.22  PDB: A:984-1018         Exon 1.23a  PDB: A:1019-1061 [INCOMPLETE]   Transcript 1
                3h2v A  884 EFPEQ----VINQPMMMAARQLHDEARKWSSK--------------------------------------------------------------------GNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRK 1061
                                |  893       903       913 |       -         -         -         -         -         -         -|      925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055      
                              888  893                   915                                                                  916                                                                                                                                                 

Chain B from PDB  Type:PROTEIN  Length:167
 aligned with B4DTM7_HUMAN | B4DTM7 from UniProtKB/TrEMBL  Length:327

    Alignment length:180
                                   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324
        B4DTM7_HUMAN    145 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP  324
               SCOP domains d3h2    vb_ B: automated matches                                                                                                                                                     SCOP domains
               CATH domains 3h2v    B00 B:884-1063  [code=1.20.120.230, no name defined]                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....----...hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---------......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3h2v B  884 EFPE----EVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAAS---------TLRWVRKTP 1063
                               |   893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043 |       - |    1063
                             887  892                                                                                                                                                     1045      1055        

Chain B from PDB  Type:PROTEIN  Length:167
 aligned with VINC_HUMAN | P18206 from UniProtKB/Swiss-Prot  Length:1134

    Alignment length:248
                                   893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123        
          VINC_HUMAN    884 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP 1131
               SCOP domains d3h2    vb_ B: automated matches                                                                                                                                                                                                                         SCOP domains
               CATH domains 3h2v    B00 B:884-1063  [code=1.                                                                    20.120.230, no name defined]                                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....----...hhhhhhhhhhhhhhhh.....--------------------------------------------------------------------.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---------......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.19b  PDB: B:884-915 (gapsExon 1.20  PDB: - UniProt: 916-983                                  Exon 1.21  PDB: B:916-983 UniProt: 984-1051                         Exon 1.22  PDB: B:984-1018         Exon 1.23a  PDB: B:1019-1063 (gaps)           Transcript 1
                3h2v B  884 EFPE----EVINQPMMMAARQLHDEARKWSSK--------------------------------------------------------------------GNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAAS---------TLRWVRKTP 1063
                               |   893       903       913 |       -         -         -         -         -         -         -|      925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055        
                             887  892                    915                                                                  916                                                                                                                             1045      1055        

Chain C from PDB  Type:PROTEIN  Length:167
 aligned with B4DTM7_HUMAN | B4DTM7 from UniProtKB/TrEMBL  Length:327

    Alignment length:180
                                   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324
        B4DTM7_HUMAN    145 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP  324
               SCOP domains d3h2     vc_ C: automated matches                                                                                                                                                    SCOP domains
               CATH domains 3h2v     C00 C:884-1063  [code=1.20.120.230, no name defined]                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....-----..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--------......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3h2v C  884 EFPE-----VINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASI--------TLRWVRKTP 1063
                               |   893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043  |      - |    1063
                             887   893                                                                                                                                                     1046     1055        

Chain C from PDB  Type:PROTEIN  Length:167
 aligned with VINC_HUMAN | P18206 from UniProtKB/Swiss-Prot  Length:1134

    Alignment length:248
                                   893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123        
          VINC_HUMAN    884 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP 1131
               SCOP domains d3h2     vc_ C: automated matche                                                                    s                                                                                                                                                    SCOP domains
               CATH domains 3h2v     C00 C:884-1063  [code=1                                                                    .20.120.230, no name defined]                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-----..hhhhhhhhhhhhhhhhh....--------------------------------------------------------------------.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--------......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.19b  PDB: C:884-915 (gapsExon 1.20  PDB: - UniProt: 916-983                                  Exon 1.21  PDB: C:916-983 UniProt: 984-1051                         Exon 1.22  PDB: C:984-1018         Exon 1.23a  PDB: C:1019-1063 (gaps)           Transcript 1
                3h2v C  884 EFPE-----VINQPMMMAARQLHDEARKWSSK--------------------------------------------------------------------GNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASI--------TLRWVRKTP 1063
                               |   893       903       913 |       -         -         -         -         -         -         -|      925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045|     1055        
                             887   893                   915                                                                  916                                                                                                                              1046     1055        

Chain D from PDB  Type:PROTEIN  Length:175
 aligned with B4DTM7_HUMAN | B4DTM7 from UniProtKB/TrEMBL  Length:327

    Alignment length:180
                                   154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324
        B4DTM7_HUMAN    145 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP  324
               SCOP domains d3h2     vd_ D: automated matches                                                                                                                                                    SCOP domains
               CATH domains 3h2v     D00 D:884-1063  [code=1.20.120.230, no name defined]                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....-----..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3h2v D  884 EFPE-----VINQPMMMAARQLHDEARKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP 1063
                               |   893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063
                             887   893                                                                                                                                                                          

Chain D from PDB  Type:PROTEIN  Length:175
 aligned with VINC_HUMAN | P18206 from UniProtKB/Swiss-Prot  Length:1134

    Alignment length:248
                                   893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123        
          VINC_HUMAN    884 EFPEQKAGEVINQPMMMAARQLHDEARKWSSKPGIPAAEVGIGVVAEADAADAAGFPVPPDMEDDYEPELLLMPSNQPVNQPILAAAQSLHREATKWSSKGNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP 1131
               SCOP domains d3h2     vd_ D: automated matche                                                                    s                                                                                                                                                    SCOP domains
               CATH domains 3h2v     D00 D:884-1063  [code=1                                                                    .20.120.230, no name defined]                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-----..hhhhhhhhhhhhhhhh.....--------------------------------------------------------------------.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.19b  PDB: D:884-915 (gapsExon 1.20  PDB: - UniProt: 916-983                                  Exon 1.21  PDB: D:916-983 UniProt: 984-1051                         Exon 1.22  PDB: D:984-1018         Exon 1.23a  PDB: D:1019-1063 [INCOMPLETE]     Transcript 1
                3h2v D  884 EFPE-----VINQPMMMAARQLHDEARKWSSK--------------------------------------------------------------------GNDIIAAAKRMALLMAEMSRLVRGGSGTKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLKILSTVKATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAASIKIRTDAGFTLRWVRKTP 1063
                               |   893       903       913 |       -         -         -         -         -         -         -|      925       935       945       955       965       975       985       995      1005      1015      1025      1035      1045      1055        
                             887   893                   915                                                                  916                                                                                                                                                   

Chain E from PDB  Type:PROTEIN  Length:74
 aligned with RAVR1_HUMAN | Q8IY67 from UniProtKB/Swiss-Prot  Length:606

    Alignment length:74
                                    66        76        86        96       106       116       126    
         RAVR1_HUMAN     57 NRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
               SCOP domains d3h2ve_ E: automated matches                                               SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhh......eeeee....eeeee..hhhhhhhhhhhhh..ee..ee.eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RRM  PDB: E:59-130 UniProt: 59-130                                       PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                3h2v E   57 HMRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
                                    66        76        86        96       106       116       126    

Chain F from PDB  Type:PROTEIN  Length:73
 aligned with RAVR1_HUMAN | Q8IY67 from UniProtKB/Swiss-Prot  Length:606

    Alignment length:73
                                    67        77        87        97       107       117       127   
         RAVR1_HUMAN     58 RRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
               SCOP domains d3h2vf_ F: automated matches                                              SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhh....eeeeeee....eeeeee.hhhhhhhhhhhhh..ee..ee.eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: F:59-130 UniProt: 59-130                                       PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                3h2v F   58 MRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
                                    67        77        87        97       107       117       127   

Chain G from PDB  Type:PROTEIN  Length:74
 aligned with RAVR1_HUMAN | Q8IY67 from UniProtKB/Swiss-Prot  Length:606

    Alignment length:74
                                    66        76        86        96       106       116       126    
         RAVR1_HUMAN     57 NRRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
               SCOP domains d3h2vg_ G: automated matches                                               SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhh....eeeeeee....eeeeee.hhhhhhhhhhhhh..ee..ee.eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --RRM  PDB: G:59-130 UniProt: 59-130                                       PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                3h2v G   57 HMRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
                                    66        76        86        96       106       116       126    

Chain H from PDB  Type:PROTEIN  Length:73
 aligned with RAVR1_HUMAN | Q8IY67 from UniProtKB/Swiss-Prot  Length:606

    Alignment length:73
                                    67        77        87        97       107       117       127   
         RAVR1_HUMAN     58 RRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
               SCOP domains d3h2vh_ H: automated matches                                              SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee......hhhhhhhhh....eeeeeee....eeeeee.hhhhhhhhhhhhh..ee..ee.eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -RRM  PDB: H:59-130 UniProt: 59-130                                       PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                3h2v H   58 MRKILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT  130
                                    67        77        87        97       107       117       127   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H2V)

(-) Gene Ontology  (54, 56)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (B4DTM7_HUMAN | B4DTM7)
molecular function
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.

Chain A,B,C,D   (VINC_HUMAN | P18206)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0045294    alpha-catenin binding    Interacting selectively and non-covalently with the alpha subunit of the catenin complex.
    GO:0008013    beta-catenin binding    Interacting selectively and non-covalently with the beta subunit of the catenin complex.
    GO:0045296    cadherin binding    Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
    GO:0002162    dystroglycan binding    Interacting selectively and non-covalently with dystroglycan. Dystroglycan is glycoprotein found in non-muscle tissues as well as in muscle tissues, often in association with dystrophin. The native dystroglycan cleaved into two non-covalently associated subunits, alpha (N-terminal) and beta (C-terminal).
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0034333    adherens junction assembly    The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments.
    GO:0043297    apical junction assembly    The formation of an apical junction, a functional unit located near the cell apex at the points of contact between epithelial cells composed of the tight junction, the zonula adherens junction and the desmosomes, by the aggregation, arrangement and bonding together of its constituents.
    GO:0048675    axon extension    Long distance growth of a single axon process involved in cellular development.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0007160    cell-matrix adhesion    The binding of a cell to the extracellular matrix via adhesion molecules.
    GO:0090136    epithelial cell-cell adhesion    The attachment of an epithelial cell to another epithelial cell via adhesion molecules.
    GO:0030032    lamellipodium assembly    Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell.
    GO:0002009    morphogenesis of an epithelium    The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube.
    GO:0006928    movement of cell or subcellular component    The directed, self-propelled movement of a cell or subcellular component without the involvement of an external agent such as a transporter or a pore.
    GO:0006936    muscle contraction    A process in which force is generated within muscle tissue, resulting in a change in muscle geometry. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis.
    GO:0030336    negative regulation of cell migration    Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration.
    GO:0070527    platelet aggregation    The adhesion of one platelet to one or more other platelets via adhesion molecules.
    GO:0002576    platelet degranulation    The regulated exocytosis of secretory granules containing preformed mediators such as histamine and serotonin by a platelet.
    GO:0034394    protein localization to cell surface    A process in which a protein is transported to, or maintained in, a location within the external part of the cell wall and/or plasma membrane.
    GO:0030334    regulation of cell migration    Any process that modulates the frequency, rate or extent of cell migration.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005912    adherens junction    A cell junction at which anchoring proteins (cadherins or integrins) extend through the plasma membrane and are attached to actin filaments.
    GO:0005903    brush border    The dense covering of microvilli on the apical surface of a epithelial cells in tissues such as the intestine, kidney, and choroid plexus; the microvilli aid absorption by increasing the surface area of the cell.
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0005913    cell-cell adherens junction    An adherens junction which connects a cell to another cell.
    GO:0005911    cell-cell junction    A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
    GO:0030055    cell-substrate junction    A cell junction that forms a connection between a cell and the extracellular matrix.
    GO:0043034    costamere    Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:1903561    extracellular vesicle    Any vesicle that is part of the extracellular region.
    GO:0005916    fascia adherens    A cell-cell adherens junction that contains the transmembrane protein N-cadherin, which interacts with identical molecules from neighboring cells to form a tight mechanical intercellular link; forms a large portion of the intercalated disc, the structure at which myofibrils terminate in cardiomyocytes.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0090637    inner dense plaque of desmosome    The desmosomal part containing the C-termini of desmoplakins which interact with the keratin intermediate filaments, serving to tether the intermediate filaments to the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0045121    membrane raft    Any of the small (10-200 nm), heterogeneous, highly dynamic, sterol- and sphingolipid-enriched membrane domains that compartmentalize cellular processes. Small rafts can sometimes be stabilized to form larger platforms through protein-protein and protein-lipid interactions.
    GO:0090636    outer dense plaque of desmosome    The desmosomal part containing plakoglobins, plakophilins, the N-termini of desmoplakins, as well as the cytoplasmic tails of the desmosomal cadherins, which together attach the plaque to the plasma membrane.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.
    GO:1990357    terminal web    An actin-rich cytoskeletal network located beneath the microvilli of the apical plasma membrane of polarized epithelial cells. In addition to actin filaments, the terminal web may contain actin-binding proteins, myosin motor proteins, and intermediate filaments. The terminal web can function as a contractile structure that influences the spatial distribution of microvilli as well as the development and morphogenesis of tissues containing polarized epithelial cells.
    GO:0005915    zonula adherens    A cell-cell adherens junction which forms a continuous belt near the apex of epithelial cells.

Chain E,F,G,H   (RAVR1_HUMAN | Q8IY67)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0000398    mRNA splicing, via spliceosome    The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        B4DTM7_HUMAN | B4DTM73h2u
        RAVR1_HUMAN | Q8IY673h2u 3smz 3vf0
        VINC_HUMAN | P182061rkc 1rke 1syq 1tr2 1ydi 2gww 2hsq 2ibf 3h2u 3jbk 3myi 3rf3 3s90 3tj5 3tj6 3vf0 4dj9 4ehp 4ln2 4lnp 4pr9 5l0c 5l0d 5l0f 5l0g 5l0h 5l0i 5l0j

(-) Related Entries Specified in the PDB File

1rke 1tr2 3h2u